; convert-matrix  -v 1 -i W12/regulonW12.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o W12/regulonW12.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Input files
;	input	W12/regulonW12.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	W12/regulonW12.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	3	9	1	13	11	12	0	14	2	1	0	13	0	6
c	3	4	0	0	2	0	0	0	0	0	1	0	1	2
g	2	1	0	1	0	0	0	0	0	2	0	0	4	3
t	6	0	13	0	1	2	14	0	12	11	13	1	9	3
//
; Sites	14
>site_0
TCTAAATATGTATT
>site_1
AATACATATTTAGA
>site_2
GCTAAATAATTAGT
>site_3
ACTAATTATTTAGC
>site_4
TCTAAATAATTATC
>site_5
GATAATTATTTAGA
>site_6
TAAAAATATTTATT
>site_7
AATAAATATTTTTA
>site_8
TATAAATATATACA
>site_9
TGTATATATTTATA
>site_10
CATAAATATTCATG
>site_11
CATGAATATTTATG
>site_12
CATACATATTTATA
>site_13
TATAAATATGTATG
a	7	7	0	12	0	0	0	12	0	4	3
c	0	4	0	0	0	12	12	0	0	1	3
g	2	0	0	0	0	0	0	0	0	4	3
t	3	1	12	0	12	0	0	0	12	3	3
//
; Sites	12
>site_0
TCTATCCATGG
>site_1
TTTATCCATAT
>site_2
ACTATCCATCC
>site_3
AATATCCATAT
>site_4
GATATCCATAA
>site_5
AATATCCATTC
>site_6
AATATCCATGA
>site_7
GATATCCATGG
>site_8
ACTATCCATTA
>site_9
AATATCCATGC
>site_10
TCTATCCATTT
>site_11
AATATCCATAG
a	6	2	1	12	11	0	12	0	1	0	11	2	6
c	2	3	11	0	0	0	0	0	1	0	0	3	2
g	2	4	1	0	1	0	0	0	1	0	1	1	3
t	3	4	0	1	1	13	1	13	10	13	1	7	2
//
; Sites	13
>site_0
CGCAGTATTTACA
>site_1
AACAATATTTATA
>site_2
AAAAATATTTATT
>site_3
GCCTATATTTACC
>site_4
TTCAATTTTTACA
>site_5
TGCAATATTTATA
>site_6
TTCATTATTTAGC
>site_7
ATGAATATTTATG
>site_8
ATCAATATATATG
>site_9
CGCAATATTTTAG
>site_10
ACCAATATTTGTT
>site_11
GCCAATATGTAAA
>site_12
AGCAATATCTATA
a	5	7	0	19	15	18	0	19	4	1	7	10
c	0	4	0	0	2	1	0	0	12	1	2	2
g	5	5	0	0	1	0	0	0	0	12	1	4
t	9	3	19	0	1	0	19	0	3	5	9	3
//
; Sites	19
>site_0
TGTAAATACTGC
>site_1
GGTAGATACGTA
>site_2
GATACATACGTA
>site_3
TCTAAATAAGCT
>site_4
TCTAAATATGTA
>site_5
ATTAAATACATA
>site_6
GCTAAATACTAT
>site_7
ATTAAATACTTG
>site_8
AGTAAATACTTT
>site_9
TATAAATAAGAA
>site_10
TATAAATAAGAA
>site_11
TATAAATATGTA
>site_12
TGTAACTACGTG
>site_13
AATAAATACCAA
>site_14
TATAAATACTAA
>site_15
GTTATATACGAG
>site_16
AATAAATAAGAC
>site_17
TCTAAATATGCA
>site_18
GGTACATACGTG
a	4	2	13	0	0	13	0	0	13	5	1
c	4	5	0	0	0	0	13	0	0	4	3
g	2	3	0	0	13	0	0	13	0	2	6
t	3	3	0	13	0	0	0	0	0	2	3
//
; Sites	13
>site_0
ATATGACGAGT
>site_1
ACATGACGAGG
>site_2
TGATGACGACG
>site_3
TGATGACGATG
>site_4
CCATGACGAAG
>site_5
GTATGACGACC
>site_6
CAATGACGAAT
>site_7
TTATGACGAAC
>site_8
AAATGACGAAG
>site_9
GCATGACGAAA
>site_10
ACATGACGATT
>site_11
CCATGACGACC
>site_12
CGATGACGACG
; Host name	baobab.eead.csic.es
; Job started	2021-02-18.135301
; Job done	2021-02-18.135301
; Seconds	0.16
;	user	0.16
;	system	0.02
;	cuser	0
;	csystem	0