; convert-matrix  -v 1 -i W13/regulonW13.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o W13/regulonW13.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Input files
;	input	W13/regulonW13.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	W13/regulonW13.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	8	11	31	32	29	0	6	12	14	13	16	0	1	0	27	12	9
c	7	7	3	1	4	1	11	10	5	4	3	2	0	32	4	9	7
g	6	10	1	1	0	0	5	5	6	2	0	1	0	3	3	3	4
t	14	7	0	1	2	34	13	8	10	16	16	32	34	0	1	11	15
//
; Sites	35
>site_0
TGAAATATTTACTCATG
>site_1
ATAAATCGACTTTCCCT
>site_2
ACACATCAATTTTCAAA
>site_3
CCAAATCCAACTTCACC
>site_4
CAAAATTTGGATTCACA
>site_5
AAAAATCAAAAGTCACC
>site_6
AAAAATTGGATTTCATT
>site_7
TGGAATTCAAATTCAAC
>site_8
GAAAACGGAAATTCAAT
>site_9
GACAATTAGAATTCAAA
>site_10
GTCAATCCTTTTTCAAT
>site_11
TAAGATCCTTTTTCAAA
>site_12
TGAAATTCTTTTTCCTT
>site_13
CTAACTTTCTATTCACT
>site_14
TAAAATAATCTTTCTCA
>site_15
GGAAATATATTTTCATA
>site_16
CTAAATTCTAATTGATT
>site_17
ACAAATCAAATTTCGGA
>site_18
CAAAATAAATTTACAGC
>site_19
TCAAATTCTTTTTCGAA
>site_20
ATCAATTCATTTTCATT
>site_21
TCAAATTGGATTTGACT
>site_22
TGAAATGCAATTTCGTG
>site_23
CGAAATTGCATTTCAGT
>site_24
AGAACTGAACATTCAAC
>site_25
CTAACTTTCTATTCACT
>site_26
GAAAATGAAACTTCCAT
>site_27
TGAAATATTTACTCATG
>site_28
TCAAATCAGGATTCACT
>site_29
TTAACTTTCTATTCATT
>site_30
TGATATAAATTTTCAAA
>site_31
TCAATTGTCTATTCAAC
>site_32
AAAAATCATTATTGATG
>site_33
TGAATTCAGAATTCAAC
>site_34
GAAAATCCTCCTTCCTT
a	0	0	3	0	3	0	2	0	1	1	2	0	1	1	1	3	0	1	0	3	2	1	0	0	2	3	0	2	0
c	0	1	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	1	2	0	0	0	1	0	0	0	0	0	0
g	0	1	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	2	1	0	1	0	1
t	3	1	0	3	0	2	1	1	1	2	1	3	2	2	0	0	3	0	0	0	1	2	2	1	0	0	2	1	2
//
; Sites	3
>site_0
TTATAGTGTAATTTCATGGAATTTGAGAT
>site_1
TCATATATGTATTTCATACATATGAATAG
>site_2
TGATATACATTTAAAATCCAATCGAATTT
a	4	4	7	7	1	2	2	2	4	2	4	3	1	8	2	2	1	2	3	4	6	3	0	0	1	3	3
c	1	2	1	0	0	1	2	4	1	2	0	0	3	0	1	0	0	4	1	0	1	0	0	1	7	2	2
g	1	1	0	1	2	1	2	1	0	1	0	1	4	0	0	0	1	0	1	4	0	0	1	0	0	1	3
t	2	1	0	0	5	4	2	1	3	3	4	4	0	0	5	6	6	2	3	0	1	5	7	7	0	2	0
//
; Sites	8
>site_0
CCAAAAGCACTACATTTCTAATTTCCC
>site_1
GAAAGTGCTATTGATTGCTGCTTTCTC
>site_2
ACAATACAATAACAAATCAAATTTCGG
>site_3
TAAATTTTCAAAAATTAAGAATTCCAG
>site_4
AACATGACTTTTGAATTCAGAATTCAA
>site_5
TTAAGCAAACATGACTTTTGAATTCAG
>site_6
AAAATTCGATTGGATTTTAAATGTATA
>site_7
AGAGTTTCTGATCATATACGTATTCCA
a	1	1	4	0	0	3	0	2	1	1	4	2	2	3	3	4	3	4	4	2	1	5	7	0	7	7	1	4
c	2	3	0	0	6	1	0	4	1	3	0	1	0	4	3	1	1	1	0	0	0	0	0	0	0	0	2	1
g	1	1	0	0	1	0	4	1	1	2	1	1	4	0	0	1	1	1	0	3	6	0	0	7	0	0	2	1
t	3	2	3	7	0	3	3	0	4	1	2	3	1	0	1	1	2	1	3	2	0	2	0	0	0	0	2	1
//
; Sites	7
>site_0
TCTTCTTCGGATTCAAAATAGAAGAATA
>site_1
GGATCTGCTAAAGAAACATTATAGAATA
>site_2
TAATCCTCCCTTGCTTTCAGGAAGAACG
>site_3
CCTTCATCTCAAGAACAGAGGAAGAACA
>site_4
CTTTCTGATCTCAACAGTATGTAGAAGC
>site_5
ATATGAGATGAGACCAAAAAGAAGAAAT
>site_6
TCATCAGGATGTGCCGTATGGAAGAAGA
a	2	0	3	0	3	2	0	0	2	3	1	0	0	0	0	3	0	0	0	1	3	0	2	0	0	1	2	1
c	0	2	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0
g	0	0	0	0	0	1	0	3	0	0	0	0	2	2	0	0	0	3	3	0	0	0	0	0	1	0	1	0
t	1	1	0	3	0	0	1	0	1	0	2	3	1	1	2	0	3	0	0	2	0	3	1	3	2	0	0	2
//
; Sites	3
>site_0
ACATAACGAATTGGTATGGTATATTCAT
>site_1
TTATAGTGTAATTTCATGGAATTTGAGA
>site_2
ACATAACGAATTGGTATGGTATATTCAT
; Host name	baobab.eead.csic.es
; Job started	2021-02-18.135539
; Job done	2021-02-18.135539
; Seconds	0.17
;	user	0.17
;	system	0.01
;	cuser	0
;	csystem	0