; convert-matrix  -v 1 -i W3/regulonW3.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o W3/regulonW3.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Input files
;	input	W3/regulonW3.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	W3/regulonW3.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	1	0	0	0	0	1	0	1	0	2	2	1	1	2	2	0	2	2	2	2	0	1	1	0
c	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	1
g	0	1	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
t	1	0	0	2	1	1	2	1	0	0	0	1	1	0	0	1	0	0	0	0	0	1	0	1
//
; Sites	2
>site_0
AGGTTATTGAATAAATAAAACAGC
>site_1
TCGTCTTAGAAATAACAAAACTAT
a	3	6	1	2	0	16	0	17	0	0	0	0	2	10	3	5
c	6	4	3	13	16	0	1	0	0	15	1	1	0	3	4	3
g	3	4	2	0	1	1	16	0	0	1	0	16	13	3	4	6
t	5	3	11	2	0	0	0	0	17	1	16	0	2	1	6	3
//
; Sites	17
>site_0
CACCCACATCTGGATT
>site_1
AATCCAGATGTGGGTG
>site_2
CATCCAGATCCGGCCA
>site_3
TGGCCGGATCTGGATG
>site_4
CACCCAGATCTGGAGC
>site_5
GCTCCAGATCTGGGTG
>site_6
ACTACAGATCTGGACT
>site_7
AGTCCAGATCTGTAGT
>site_8
GGTCCAGATCTGAAAA
>site_9
TTTTCAGATCTGGACC
>site_10
TATACAGATCTGGGAG
>site_11
CTCCCAGATCTGTATA
>site_12
TCACCAGATCTCGACG
>site_13
CGTCGAGATCTGGTGA
>site_14
TCTCCAGATTTGGCGA
>site_15
GAGCCAGATCTGAAAG
>site_16
CTTTCAGATCTGGCTC
a	1	5	0	12	0	0	1	0	0	0	3	0	7	4	3
c	3	5	0	2	14	0	13	14	14	12	0	12	2	4	1
g	5	1	0	0	0	0	0	0	0	1	9	1	3	6	5
t	5	3	14	0	0	14	0	0	0	1	2	1	2	0	5
//
; Sites	14
>site_0
CCTACTCCCCACACA
>site_1
TATACTCCCCTCTCG
>site_2
GCTACTACCCGCAGT
>site_3
CATCCTCCCCGCACG
>site_4
TTTACTCCCTGCAGT
>site_5
TATACTCCCCTCCAT
>site_6
TTTACTCCCGGCAGG
>site_7
GTTCCTCCCCGCAAT
>site_8
CCTACTCCCCGCCAC
>site_9
ACTACTCCCCACGAG
>site_10
GGTACTCCCCGCGCG
>site_11
GATACTCCCCACAGA
>site_12
TATACTCCCCGGTGA
>site_13
GCTACTCCCCGTGGT
; Host name	baobab.eead.csic.es
; Job started	2021-02-18.111415
; Job done	2021-02-18.111415
; Seconds	0.16
;	user	0.16
;	system	0.03
;	cuser	0
;	csystem	0