; convert-matrix  -v 1 -i W5/regulonW5.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o W5/regulonW5.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Input files
;	input	W5/regulonW5.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	W5/regulonW5.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	8	6	1	3	4	1	27	24	2	0	0	29	26	4	9	9
c	6	6	1	0	22	25	3	3	0	1	29	0	1	23	7	5
g	6	13	6	5	2	0	0	1	26	0	0	0	1	1	6	5
t	10	5	22	22	2	4	0	2	2	29	1	1	2	2	8	11
//
; Sites	30
>site_0
AGTTGCCAGTCAACGA
>site_1
GATACCATGTCAACAA
>site_2
ATTTGCAAGTCAAAGA
>site_3
CGGTCCACGTCAACTT
>site_4
ATTTCTCAGTCAACAG
>site_5
GGTGCCAAGCCAACAA
>site_6
ACTGCCAATTCAACTC
>site_7
GTGTACAAGTCAACTA
>site_8
TGTTCTAAGTCAAACT
>site_9
TGGACCAAGTCAACGG
>site_10
TGAGCCAAGTCAACAC
>site_11
CGTTACATGTCAACGC
>site_12
TGTACCAAATCAACGG
>site_13
CCGTCAAAGTCAACAT
>site_14
TCCTCCAAGTCATCCT
>site_15
CCTTCCAAATCAACAT
>site_16
TGTTCTAAGTCAAACT
>site_17
AATTCCAAGTCAAATC
>site_18
TATTCCAAGTCAAGAA
>site_19
TATTCCACGTCAATTA
>site_20
GGGTCCAAGTCACCGT
>site_21
TCTTCCAAGTCTATAT
>site_22
CATTACAATTCAACCA
>site_23
GGTGCCAGGTCAACAT
>site_24
AATTTCCAGTCAACTA
>site_25
ATTTTCAAGTCAGCCT
>site_26
TGTTCTAAGTTAACCT
>site_27
CGGTCCACGTCAACCC
>site_28
ATTTACAAGTCATCTG
>site_29
GCTGCCAAGTCAACTG
a	1	0	1	0	0	0	4	4	0	1	0	0	0	0	4	5	0	1	1
c	2	2	2	0	3	3	0	0	2	0	5	0	0	5	1	0	5	1	3
g	2	1	1	1	1	2	1	0	3	0	0	5	0	0	0	0	0	3	1
t	0	2	1	4	1	0	0	1	0	4	0	0	5	0	0	0	0	0	0
//
; Sites	5
>site_0
CTGTCGAAGACGTCAACGC
>site_1
GTTTGGAACTCGTCAACAA
>site_2
ACCTCCGACTCGTCAACGG
>site_3
GCATCCATGTCGTCCACCC
>site_4
CGCGTCAAGTCGTCAACGC
a	15	6	5	0	2	3	43	40	6	1	0	3	39	31	15	5
c	9	14	7	6	39	40	0	1	1	1	42	37	2	2	6	12
g	8	10	3	2	2	0	0	2	36	0	0	2	1	5	18	10
t	12	14	29	36	1	1	1	1	1	42	2	2	2	6	5	17
//
; Sites	44
>site_0
TTTTCAAAGTCCACGC
>site_1
ATTTGCAAGTCAAAGA
>site_2
CACTCCACGTCCAAAG
>site_3
ACTTCCAAATCCAAAT
>site_4
ATTTCCATGTCCAAAT
>site_5
GCTCCCAAGTCCCAAC
>site_6
GTTTCCAAGTCCGGAT
>site_7
AGTTCCAAGTCCTTGT
>site_8
CCATCCAAGTTCAAAT
>site_9
AGCTCCAAGTCGAAGT
>site_10
TTCTCCAAGTCCAAAC
>site_11
ACTCCCAAGTCCAAGT
>site_12
GTGTCCAAGTCCAACC
>site_13
TCATCCAAGTCCAAGG
>site_14
CGCTCCAAGTCCAGTT
>site_15
TTTTCCAGGTCCAAAC
>site_16
TTTTACAATTCCAACT
>site_17
TGTCCAAAGTCCAAAC
>site_18
GCTCCCAAGTCCTAGC
>site_19
TATTCCAAGTCCCAGT
>site_20
ATTTCTAAGTCCATTG
>site_21
TCTTGCTAGTCCAATG
>site_22
CGTTCCAAGTCGAATT
>site_23
CCTTCCAAATCCATGG
>site_24
CTATCCAAATCCAACG
>site_25
GCTTTCAAGTTCAACC
>site_26
ATTTCCAAATCCAAAT
>site_27
CGTCCCAAGACCAAGG
>site_28
AATTCCAAGTCAAATC
>site_29
TATTCCAAGTCAAGAA
>site_30
TCTTCCAAGTCTATAT
>site_31
AGTCCAAAGTCCAAAC
>site_32
CATTCCAAATCCATGT
>site_33
AGCTCCAAGTCCAAAA
>site_34
ACCTCCAACTCCAAGC
>site_35
GCCTCCAGGTCCAAGG
>site_36
ATATCCAAGTCTAAGT
>site_37
TTTTCCAAGCCCACGC
>site_38
CCGGCCAAGTCCAAGT
>site_39
ATATCCAAGTCCAACA
>site_40
TAGTCCAAGTCCATGA
>site_41
GGTTCCAAATCCAGGG
>site_42
ACTTACAAGTCCAAAT
>site_43
GGTGCCAAGTCCAGCG
a	1	1	0	0	0	0	2	0	0	0	0	0	0	4	4	2	0	0
c	1	1	0	0	0	0	1	4	4	0	0	1	4	0	0	2	2	2
g	2	2	2	0	0	4	1	0	0	4	4	1	0	0	0	0	1	1
t	0	0	2	4	4	0	0	0	0	0	0	2	0	0	0	0	1	1
//
; Sites	4
>site_0
AGTTTGACCGGCCAACGC
>site_1
GCGTTGGCCGGTCAAACT
>site_2
GAGTTGACCGGGCAAACG
>site_3
CGTTTGCCCGGTCAACTC
a	0	1	0	0	1	0	0	0	0	0	0	1	1	1	0	0	0	1	1	0	1	0
c	0	0	1	0	0	1	1	1	0	0	1	0	0	0	0	0	1	0	0	1	0	0
g	1	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1
//
; Sites	1
>site_0
GACGACCCGTCAAAGTCAACAT
; Host name	baobab.eead.csic.es
; Job started	2021-02-18.111410
; Job done	2021-02-18.111410
; Seconds	0.17
;	user	0.17
;	system	0.02
;	cuser	0
;	csystem	0