Nearest neighbor based clutter/noise detection
Parametric bootstrap test for clustering in abundance matrices
Converts alleleobject into binary matrix
Format conversion for codominant marker data
Internal: create character matrix out of allele list
Internal: generates neighborhood list for diploid loci
Generate spatial weights from prabclus neighborhood list
Simulation of presence-absence matrices (clustered)
Compare species clustering and species groups
Connectivity components of an undirected graph
Distance ratio test statistics for distance based clustering
Neighborhood list from geographical distance
Classical distance-based test for homogeneity against clustering
Clustering of species ranges from presence-absence matrices (hierarchical methods)
Snail presence-absence data from Aegean sea
Visualises clusters of markers vs. species
Distances between communities, auxiliary functions
Piecewise linear transformation for distance matrices
Plots for within-groups and between-groups distance regression
p-value simulation for presence-absence matrices clustering test
Estimates SAR model from log-abundance matrix of prab-object.
Clustering for biotic elements or for species delimitation (mixture method)
Parametric bootstrap test for clustering in presence-absence matrices
Simulation of presence-absence matrices (non-clustered)
Regression between subsets of dissimilarity matrices
Testing equality of within-groups and between-groups distances regression
Testing equality of one within-group and between-two groups distances regression
Regression difference between within-group dissimilarities
Regression difference within reference group and between-group dissimilarities
Testing equality of two distance-regressions
Simulation of abundance matrices (non-clustered)
Average within-group distances for given groups
Stress values for different dimensions of Kruskal's MDS
Microsatellite genetic data of Tetragonula bees
Convert abundance matrix into presence/absence matrix
Internal: create allele list out of character matrix
Overwater distances between islands in the Aegean sea