position-analysis -v 1 -i peaks-rm-orig/data/sequences/peaks_ctrl_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title analysis_M11 -origin end -offset 0 -o peaks-rm-orig/results/composition/peaks_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	peaks-rm-orig/data/sequences/peaks_ctrl_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	peaks-rm-orig/results/composition/peaks_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	27107
	Sum of sequence lengths      	5448507
	Min sequence length          	0
	Max sequence length          	201
	Average sequence length      	201
	Possible positions           	5421400
 Oligonucleotide statistics:
	Total occurrences    	4496347
 Position interval parameters:
	Position interval    	20
	Number of windows    	11
	Total positions      	5421400
	Degrees of freedom   	10
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-11	[-219,-200]	-209.5	27107	54214
	2	-10	[-199,-180]	-189.5	27107	542140
	3	-9	[-179,-160]	-169.5	27107	542140
	4	-8	[-159,-140]	-149.5	27107	542140
	5	-7	[-139,-120]	-129.5	27107	542140
	6	-6	[-119,-100]	-109.5	27107	542140
	7	-5	[-99,-80]	-89.5	27107	542140
	8	-4	[-79,-60]	-69.5	27107	542140
	9	-3	[-59,-40]	-49.5	27107	542140
	10	-2	[-39,-20]	-29.5	27107	542140
	11	-1	[-19,0]	-9.5	27107	487926

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-209.5         	occurrences in window	1	[-219,-200]
	11	-189.5         	occurrences in window	2	[-199,-180]
	12	-169.5         	occurrences in window	3	[-179,-160]
	13	-149.5         	occurrences in window	4	[-159,-140]
	14	-129.5         	occurrences in window	5	[-139,-120]
	15	-109.5         	occurrences in window	6	[-119,-100]
	16	-89.5          	occurrences in window	7	[-99,-80]
	17	-69.5          	occurrences in window	8	[-79,-60]
	18	-49.5          	occurrences in window	9	[-59,-40]
	19	-29.5          	occurrences in window	10	[-39,-20]
	20	-9.5           	occurrences in window	11	[-19,0]

 Host name	rsat
 Job started	2023-05-30.162506
 Job done	2023-05-30.162537
 Seconds	31.25
	user	31.25
	system	0.01
	cuser	0.11
;	csystem	0.02