peaks-rm-orig/results/composition/peaks_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i peaks-rm-orig/data/sequences/peaks_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title analysis_M11 -origin end -offset 0 -o peaks-rm-orig/results/composition/peaks_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	peaks-rm-orig/data/sequences/peaks_test_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	peaks-rm-orig/results/composition/peaks_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	269
	Sum of sequence lengths      	54069
	Min sequence length          	0
	Max sequence length          	201
	Average sequence length      	201
	Possible positions           	53800
 Oligonucleotide statistics:
	Total occurrences    	40385
 Position interval parameters:
	Position interval    	20
	Number of windows    	11
	Total positions      	53800
	Degrees of freedom   	10
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-11	[-219,-200]	-209.5	269	538
	2	-10	[-199,-180]	-189.5	269	5380
	3	-9	[-179,-160]	-169.5	269	5380
	4	-8	[-159,-140]	-149.5	269	5380
	5	-7	[-139,-120]	-129.5	269	5380
	6	-6	[-119,-100]	-109.5	269	5380
	7	-5	[-99,-80]	-89.5	269	5380
	8	-4	[-79,-60]	-69.5	269	5380
	9	-3	[-59,-40]	-49.5	269	5380
	10	-2	[-39,-20]	-29.5	269	5380
	11	-1	[-19,0]	-9.5	269	4842

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-209.5         	occurrences in window	1	[-219,-200]
	11	-189.5         	occurrences in window	2	[-199,-180]
	12	-169.5         	occurrences in window	3	[-179,-160]
	13	-149.5         	occurrences in window	4	[-159,-140]
	14	-129.5         	occurrences in window	5	[-139,-120]
	15	-109.5         	occurrences in window	6	[-119,-100]
	16	-89.5          	occurrences in window	7	[-99,-80]
	17	-69.5          	occurrences in window	8	[-79,-60]
	18	-49.5          	occurrences in window	9	[-59,-40]
	19	-29.5          	occurrences in window	10	[-39,-20]
	20	-9.5           	occurrences in window	11	[-19,0]
seq id occ chi2 df Pval Eval sig rank -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5
tg tg 2191 29.9 10 8.9e-04 0.014 1.84 1 43 211 221 219 190 203 211 231 227 214 221
tc tc 3392 29.6 10 1.0e-03 0.016 1.80 2 37 296 278 321 333 357 344 342 382 365 337
cg cg 1359 28.7 10 1.4e-03 0.022 1.65 3 5 95 119 130 155 150 153 137 133 150 132
ct ct 3058 28.6 10 1.4e-03 0.023 1.64 4 19 282 268 299 278 315 296 302 350 345 304
cc cc 2609 21.9 10 1.6e-02 0.25 0.60 5 32 236 220 265 289 239 258 297 277 271 225
tt tt 4039 20.9 10 2.2e-02 0.35 0.46 6 41 386 383 347 380 449 426 424 395 424 384
at at 2819 20.6 10 2.4e-02 0.39 0.41 7 41 322 259 265 288 302 266 282 254 273 267
ta ta 2097 19.0 10 4.0e-02 0.64 0.20 8 20 241 210 193 229 237 186 188 190 203 200
gc gc 1687 15.3 10 1.2e-01 1.9 -0.29 9 5 158 170 165 162 158 190 160 174 179 166
aa aa 4213 14.5 10 1.5e-01 2.4 -0.38 10 42 459 446 454 436 423 412 395 393 393 360
gg gg 1348 11.8 10 3.0e-01 4.8 -0.68 11 14 131 150 124 123 125 162 146 130 126 117
ac ac 2440 10.4 10 4.1e-01 6.5 -0.81 12 13 237 251 269 256 244 230 242 240 233 225
ca ca 3084 10.0 10 4.4e-01 7 -0.85 13 21 304 315 335 317 277 319 296 310 308 282
ga ga 2159 8.3 10 6.0e-01 9.6 -0.98 14 27 227 219 219 195 199 212 238 206 218 199
ag ag 2091 7.7 10 6.6e-01 11 -1.02 15 22 214 228 214 186 187 213 209 211 221 186
gt gt 1799 4.3 10 9.3e-01 15 -1.17 16 18 160 182 180 173 185 175 177 191 189 169 
 Host name	rsat
 Job started	2023-05-30.162359
 Job done	2023-05-30.162359
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