; parse-gtf  -v 2 -i $RSAT/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR.gtf -fasta $RSAT/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR.pep.all.fa -org_name Fragaria_vesca.Hawaii4.Fvb2.0.GDR -task all -taxid 101020 -gtf_source GDR -o $RSAT/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome
; Program version       	1.48
; Input files
;	fasta_rm     	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR.dna_rm.genome.fa
;	gtf          	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR.gtf
;	fasta        	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR.dna.toplevel.fa
;	fasta_pep    	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR.pep.all.fa
; Output files
;	peptidic_sequences	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/peptidic_sequences.fasta
;	contigs_txt_rm	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/contigs_rm.txt
;	tts_gtf      	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR_tts.gtf
;	gene_gtf     	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR_gene.gtf
;	contig_rm    	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/contig_rm.tab
;	gene         	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/gene.tab
;	stop_codon_gtf	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR_stop_codon.gtf
;	transcript   	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/transcript.tab
;	gene_start_gtf	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR_gene_start.gtf
;	gene_end_gtf 	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR_gene_end.gtf
;	cds          	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/cds.tab
;	three_prime_utr_gtf	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR_three_prime_utr.gtf
;	log          	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/log.txt
;	exon         	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/exon.tab
;	organism     	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/organism.tab
;	contig       	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/contig.tab
;	tss_gtf      	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR_tss.gtf
;	stop_codon   	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/stop_codon.tab
;	start_codon_gtf	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR_start_codon.gtf
;	five_prime_utr_gtf	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR_five_prime_utr.gtf
;	transcript_gtf	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR_transcript.gtf
;	fasta_lengths	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR.dna.toplevel_lengths.tab
;	start_codon  	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/start_codon.tab
;	contigs_txt  	/var/www/html/rsat/public_html/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/contigs.txt
;	fasta_pep_lengths	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR.pep.all_lengths.tab
;	fasta_rm_lengths	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR.dna_rm.genome_lengths.tab
;	exon_gtf     	/var/www/html/rsat/data/genomes/Fragaria_vesca.Hawaii4.Fvb2.0.GDR/genome/Fragaria_vesca.Hawaii4.Fvb2.0.GDR_exon.gtf
; Parsed rows per feature type
;	             	33538
;	cds          	273797
;	exon         	295458
;	five_prime_utr	46966
;	gene         	33538
;	mrna         	50732
;	three_prime_utr	41985
; Parsed rows per contig
;	Contig       	Total		cds	exon	five_prime_utr	gene	mrna	three_prime_utr
;	###          	33538	33538	0	0	0	0	0	0
;	Fvb1         	81580	0	29975	32176	5218	3793	5694	4724
;	Fvb2         	107791	0	39417	42697	7072	4889	7329	6387
;	Fvb3         	109675	0	40106	43597	7017	5063	7647	6245
;	Fvb4         	102277	0	38292	40907	5913	4801	7049	5315
;	Fvb5         	108224	0	39964	43151	6708	4850	7412	6139
;	Fvb6         	143598	0	53297	57297	8896	6508	9754	7846
;	Fvb7         	85229	0	31267	34053	5901	3378	5512	5118
;	FvbUn        	4102	0	1479	1580	241	256	335	211
; Host name	baobab.eead.csic.es
; Job started	2017-12-15.123039
; Job done	2017-12-15.154509
; Seconds	41.62
;	user	41.62
;	system	1.46
;	cuser	11489.96
;	csystem	139.82