; parse-gtf -v 2 -i $RSAT/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR.gtf -fasta $RSAT/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR.pep.all.fa -org_name Malus_domestica.GDDH13.1-1.GDR -task all -taxid 3750 -gtf_source GDR -o $RSAT/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR.gtf ; fasta /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR.dna.toplevel.fa ; fasta_pep /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR.pep.all.fa ; Output files ; organism /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/organism.tab ; cds /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/cds.tab ; stop_codon /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/stop_codon.tab ; gene_gtf /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR_gene.gtf ; transcript /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/transcript.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR_start_codon.gtf ; tts_gtf /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR_tts.gtf ; exon_gtf /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR_exon.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR_gene_end.gtf ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/contigs_rm.txt ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/contigs.txt ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR.dna_rm.genome_lengths.tab ; log /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/log.txt ; tss_gtf /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR_tss.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR.dna.toplevel_lengths.tab ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR.pep.all_lengths.tab ; transcript_gtf /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR_transcript.gtf ; gene_start_gtf /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR_gene_start.gtf ; contig /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/contig.tab ; exon /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/exon.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR_stop_codon.gtf ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/peptidic_sequences.fasta ; start_codon /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/start_codon.tab ; gene /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/gene.tab ; contig_rm /var/www/html/rsat/public_html/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/contig_rm.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR_three_prime_utr.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Malus_domestica.GDDH13.1-1.GDR/genome/Malus_domestica.GDDH13.1-1.GDR_five_prime_utr.gtf ; Parsed rows per feature type ; cds 215867 ; exon 234986 ; five_prime_utr 38129 ; gene 52741 ; mrna 45116 ; ncrna 7625 ; three_prime_utr 36043 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene mrna ncrna three_prime_utr ; Chr00 22369 7342 8121 1270 2219 1628 591 1198 ; Chr01 27666 9492 10176 1633 2402 2043 359 1561 ; Chr02 38964 13169 14591 2456 3207 2786 421 2334 ; Chr03 35515 12000 13301 2174 2992 2535 457 2056 ; Chr04 29375 9952 10883 1831 2485 2093 392 1739 ; Chr05 43256 14632 16153 2679 3647 3176 471 2498 ; Chr06 28840 9899 10698 1762 2416 2062 354 1649 ; Chr07 37537 12809 14011 2298 3116 2743 373 2187 ; Chr08 30458 10481 11393 1815 2511 2153 358 1747 ; Chr09 35358 12196 13174 2125 2934 2538 396 1995 ; Chr10 40851 13990 15224 2503 3426 2973 453 2282 ; Chr11 37880 12883 14141 2288 3184 2730 454 2200 ; Chr12 31980 10927 11958 1941 2642 2261 381 1870 ; Chr13 34038 11756 12633 2027 2861 2411 450 1900 ; Chr14 30219 10480 11293 1812 2476 2163 313 1682 ; Chr15 56344 19637 21130 3419 4460 3890 570 3238 ; Chr16 35357 12373 13255 2034 2886 2445 441 1923 ; Chr17 34500 11849 12851 2062 2877 2486 391 1984 ; Host name baobab ; Job started 2024-02-01.160922 ; Job done 2024-02-01.230944 ; Seconds 61.48 ; user 61.48 ; system 6.75 ; cuser 24886.84 ; csystem 319.61