; parse-gtf  -v 2 -i $RSAT/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40.gtf -fasta $RSAT/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40.pep.all.fa -org_name Solanum_tuberosum.SolTub_3.0.40 -task all -taxid 4113 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome
; Program version       	1.48
; Input files
;	fasta_rm     	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40.dna_rm.genome.fa
;	gtf          	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40.gtf
;	fasta        	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40.dna.toplevel.fa
;	fasta_pep    	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40.pep.all.fa
; Output files
;	peptidic_sequences	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/peptidic_sequences.fasta
;	contigs_txt_rm	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/contigs_rm.txt
;	tts_gtf      	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40_tts.gtf
;	gene_gtf     	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40_gene.gtf
;	contig_rm    	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/contig_rm.tab
;	gene         	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/gene.tab
;	stop_codon_gtf	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40_stop_codon.gtf
;	transcript   	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/transcript.tab
;	gene_start_gtf	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40_gene_start.gtf
;	gene_end_gtf 	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40_gene_end.gtf
;	cds          	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/cds.tab
;	three_prime_utr_gtf	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40_three_prime_utr.gtf
;	log          	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/log.txt
;	exon         	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/exon.tab
;	organism     	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/organism.tab
;	contig       	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/contig.tab
;	tss_gtf      	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40_tss.gtf
;	stop_codon   	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/stop_codon.tab
;	start_codon_gtf	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40_start_codon.gtf
;	five_prime_utr_gtf	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40_five_prime_utr.gtf
;	transcript_gtf	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40_transcript.gtf
;	fasta_lengths	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40.dna.toplevel_lengths.tab
;	start_codon  	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/start_codon.tab
;	contigs_txt  	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/contigs.txt
;	fasta_pep_lengths	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40.pep.all_lengths.tab
;	fasta_rm_lengths	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40.dna_rm.genome_lengths.tab
;	exon_gtf     	/var/www/html/rsat/data/genomes/Solanum_tuberosum.SolTub_3.0.40/genome/Solanum_tuberosum.SolTub_3.0.40_exon.gtf
; Parsed rows per feature type
;	cds          	202357
;	exon         	225211
;	five_prime_utr	49654
;	gene         	40430
;	start_codon  	56000
;	stop_codon   	56255
;	three_prime_utr	46542
;	transcript   	57619
; Parsed rows per contig
;	Contig       	Total	cds	exon	five_prime_utr	gene	start	stop	three_prime_utr	transcript
;	00           	17410	4008	4445	948	1640	1782	1799	895	1893
;	1            	91112	25212	28205	6321	4889	6813	6841	5796	7035
;	10           	51412	14000	15575	3406	2962	4044	4067	3180	4178
;	11           	46092	12692	14204	3185	2489	3485	3502	2972	3563
;	12           	53636	15077	16680	3373	2994	4048	4072	3232	4160
;	2            	69331	19450	21709	5055	3323	4991	4998	4698	5107
;	3            	71555	19944	22188	5003	3773	5268	5289	4631	5459
;	4            	61678	16773	18624	4092	3523	4857	4882	3967	4960
;	5            	49869	13751	15310	3333	2732	3818	3833	3170	3922
;	6            	64732	17951	19902	4461	3425	4861	4889	4226	5017
;	7            	51570	14287	15877	3439	2810	3921	3942	3261	4033
;	8            	51960	14668	16250	3410	2782	3870	3886	3130	3964
;	9            	53711	14544	16242	3628	3088	4242	4255	3384	4328
; Host name	baobab.eead.csic.es
; Job started	2018-09-24.221016
; Job done	2018-09-25.054750
; Seconds	110
;	user	110
;	system	103.4
;	cuser	26254.75
;	csystem	975.51