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%
% Tutorials for the Network Analysis Tools (NeAT)
%
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%\documentclass{article}
%\documentclass{book}
\documentclass[12pt,a4paper, twoside]{scrreprt} % KOMA-class Neukam and Kohm, scrbook alternatively
%\documentstyle[makeidx]{book}
\makeindex
\include{rsat_latex_commands}
 % inclut du code


\begin{document}

\title{Network Analysis Tools (NeAT) \\
Tutorial}

\author{
	Sylvain Broh\'ee \\
	\email{sbrohee@ulb.ac.be} \\
        \and \\
	Karoline Faust \\
	\email{kfaust@ulb.ac.be} \\
        \and \\
	Jacques van Helden \\
	\email{jvhelden@ulb.ac.be}\\
        \\
        \\
        \bigre
}



\maketitle

\newpage
\tableofcontents
\newpage

\section*{Warning}

This tutorial is in construction. The current version only covers a
very small fraction of the \neat tools. For the tools not covered yet
by the tutorial, the \option{DEMO} buttons already give some hints
about typical cases of utilization. We intend to develop further those
tutorials very soon.

\input{neat_tut_intro.tex}

\input{neat_tut_convert_display_graph.tex}
% 
\input{neat_tut_compare_graphs.tex}

\input{neat_tut_graph_node_degree}

\input{neat_tut_graph_neighbours.tex}

\input{neat_tut_network_clustering.tex}

\input{neat_tut_random_alter_graph.tex}

\input{neat_tut_pathfinding.tex}

\input{neat_tut_metabolicpathfinding.tex}

\input{neat_tut_keggnetworkprovider.tex}

\input{neat_tut_pathwayinference.tex}

% Karoline: we never wrote any exercises, so I outcomment this
\input{neat_exercises.tex}

% Bibliography is not working yet. I have to debug
\bibliographystyle{plain}
\bibliography{neat_bibliography}

\end{document}
