FASTA searches a protein or DNA sequence data bank version 3.3t08 Jan. 17, 2001 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 t/data/cysprot1.fa: 343 aa >CYS1_DICDI vs /data_2/jason/blastdb/ecoli.aa library searching /data_2/jason/blastdb/ecoli.aa library opt E() < 20 0 0: 22 0 0: one = represents 7 library sequences 24 0 0: 26 0 0: 28 0 1:* 30 4 6:* 32 13 23:== * 34 62 62:========* 36 130 127:==================* 38 252 210:=============================*====== 40 310 293:=========================================*=== 42 405 359:===================================================*====== 44 401 396:========================================================*= 46 386 403:======================================================== * 48 348 386:================================================== * 50 360 352:==================================================*= 52 290 309:========================================== * 54 264 264:=====================================* 56 215 221:===============================* 58 145 181:===================== * 60 144 147:====================* 62 119 118:================* 64 96 94:=============* 66 72 74:==========* 68 65 58:========*= 70 54 46:======*= 72 30 36:=====* 74 19 28:===* 76 26 22:===* 78 18 17:==* 80 19 13:=*= 82 14 10:=* 84 8 8:=* 86 4 6:* 88 2 5:* inset = represents 1 library sequences 90 4 4:* 92 3 3:* :==* 94 2 2:* :=* 96 1 2:* :=* 98 1 1:* :* 100 0 1:* :* 102 0 1:* :* 104 2 1:* :*= 106 0 0: * 108 1 0:= *= 110 0 0: * 112 0 0: * 114 0 0: * 116 0 0: * 118 0 0: * >120 0 0: * 1358987 residues in 4289 sequences Expectation_n fit: rho(ln(x))= 5.9493+/-0.00202; mu= 2.7408+/- 0.115 mean_var=77.5610+/-17.011, 0's: 0 Z-trim: 0 B-trim: 2 in 1/41 Lambda= 0.1456 Kolmogorov-Smirnov statistic: 0.0234 (N=29) at 44 FASTA (3.36 June 2000) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, gap-pen: -12/ -2, width: 16 Scan time: 1.110 The best scores are: opt bits E(4289) gi|1787478|gb|AAC74309.1| (AE000221) nitrate redu ( 512) 92 29 1.2 gi|1790635|gb|AAC77148.1| (AE000491) putative DEO ( 251) 84 27 2.1 gi|1786590|gb|AAC73494.1| (AE000145) orf, hypothe ( 94) 78 26 2.1 gi|1790853|gb|AAC77345.1| (AE000509) soluble lyti ( 654) 84 28 4.8 gi|1789307|gb|AAC75975.1| (AE000377) biosynthetic ( 658) 83 27 5.6 gi|1788174|gb|AAC74937.1| (AE000280) orf, hypothe ( 199) 74 25 7.4 gi|1789138|gb|AAC75818.1| (AE000361) putative kin ( 492) 79 26 7.8 gi|1789427|gb|AAC76084.1| (AE000386) orf, hypothe ( 354) 76 26 9.1 >>gi|1787478|gb|AAC74309.1| (AE000221) nitrate reductase (512 aa) initn: 35 init1: 35 opt: 92 Z-score: 109.2 bits: 29.2 E(): 1.2 Smith-Waterman score: 92; 23.936% identity (26.012% ungapped) in 188 aa overlap (125-305:2-181) 100 110 120 130 140 150 CYS1_D NKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTT-GNV-- . :. : : : .: .: . :.: :: gi|178 MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWT 10 20 30 160 170 180 190 200 CYS1_D --EGQHFISQNKLVSLSEQNLVDCDHECME-YEGEEACDEGCNGGLQPNAYNYIIKNGGI :: .. :.. . :.. : : .: :.: . :: ::: : . : : gi|178 SREGVEYAWFNNVETKPGQGF-PTDWENQEKYKGGWI--RKINGKLQPRMGNRAMLLGKI 40 50 60 70 80 210 220 230 240 250 260 CYS1_D QTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGP-LAIAADAVEW .. : . .:. :. . . :.. . . :: .: . .: gi|178 FANPHLPGIDDYYEPFDFDYQNLHTAPEG----SKSQPIARPRSLITGERMAKIEKGPNW 90 100 110 120 130 140 270 280 290 300 310 320 CYS1_D QFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRR . .:: :: . ...:. : . :: .. : .: gi|178 EDDLGGEFDKLAKDKNFDN-IQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYK 150 160 170 180 190 200 330 340 CYS1_D GKNTCGVSNFVSTSII gi|178 REEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETC 210 220 230 240 250 260 >>gi|1790635|gb|AAC77148.1| (AE000491) putative DEOR-typ (251 aa) initn: 46 init1: 46 opt: 84 Z-score: 104.9 bits: 27.4 E(): 2.1 Smith-Waterman score: 84; 22.078% identity (23.288% ungapped) in 77 aa overlap (99-171:119-195) 70 80 90 100 110 120 CYS1_D HKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRG :.:. ::.:.:: :. .:. ... gi|179 QLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKS 90 100 110 120 130 140 130 140 150 160 170 180 CYS1_D AVTPVKNQGQCGSC----WSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEE .. ::. .: : :.. .. .. . . . :....::.... gi|179 QSITLSPQGSENSLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSS 150 160 170 180 190 200 190 200 210 220 230 240 CYS1_D ACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKN gi|179 KIGERAGMLFSRADQIDMLITGKNANPEILQQLEAQGVSILRV 210 220 230 240 250 >>gi|1786590|gb|AAC73494.1| (AE000145) orf, hypothetical (94 aa) initn: 37 init1: 37 opt: 78 Z-score: 104.8 bits: 25.9 E(): 2.1 Smith-Waterman score: 78; 36.842% identity (43.750% ungapped) in 38 aa overlap (242-278:42-74) 220 230 240 250 260 270 CYS1_D SSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFY- :.. ::..: . : ::..:: : gi|178 VKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLP-----DATDWQVYE 20 30 40 50 60 280 290 300 310 320 330 CYS1_D IGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKN :.::..: gi|178 AGSVFNVPGHSEFHLQVAEPTSYLCRYL 70 80 90 >>gi|1790853|gb|AAC77345.1| (AE000509) soluble lytic mur (654 aa) initn: 61 init1: 61 opt: 84 Z-score: 98.5 bits: 27.6 E(): 4.8 Smith-Waterman score: 84; 32.692% identity (34.694% ungapped) in 52 aa overlap (104-152:104-155) 80 90 100 110 120 130 CYS1_D KFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPV :: : :...:.: . ::: : .: gi|179 YPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE 80 90 100 110 120 130 140 150 160 170 180 190 CYS1_D K---NQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEEACDEGC : ...::. .. .::. : gi|179 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY 140 150 160 170 180 190 >>gi|1789307|gb|AAC75975.1| (AE000377) biosynthetic argi (658 aa) initn: 41 init1: 41 opt: 83 Z-score: 97.3 bits: 27.4 E(): 5.6 Smith-Waterman score: 83; 23.913% identity (24.176% ungapped) in 92 aa overlap (178-268:315-406) 150 160 170 180 190 200 CYS1_D TGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEEA-CDEGCNGGLQPNAYNYIIKNG ..::: .. : . : ::. : : : : gi|178 TGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIG 290 300 310 320 330 340 210 220 230 240 250 260 CYS1_D GIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVE :.. :. . . .:. . .::. . .:: .. . .: :. . gi|178 DACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAEDAPRALQSMWET 350 360 370 380 390 400 270 280 290 300 310 320 CYS1_D WQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLR :: gi|178 WQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGIFSLQERAWAEQLYLSMCHEVQKQLD 410 420 430 440 450 460 >>gi|1788174|gb|AAC74937.1| (AE000280) orf, hypothetical (199 aa) initn: 46 init1: 46 opt: 74 Z-score: 95.2 bits: 25.2 E(): 7.4 Smith-Waterman score: 74; 43.750% identity (50.000% ungapped) in 32 aa overlap (308-335:110-141) 280 290 300 310 320 330 CYS1_D PCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRR-GKNT---CG :.: .::: .: . . ::: : .: :: gi|178 PVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCG 80 90 100 110 120 130 340 CYS1_D VSNFVSTSII .:. gi|178 ISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL 140 150 160 170 180 190 >>gi|1789138|gb|AAC75818.1| (AE000361) putative kinase [ (492 aa) initn: 36 init1: 36 opt: 79 Z-score: 94.7 bits: 26.5 E(): 7.8 Smith-Waterman score: 84; 19.136% identity (21.233% ungapped) in 162 aa overlap (34-192:165-313) 10 20 30 40 50 60 CYS1_D ILLFVLAVFTVFVSSRGIPPEEQSQFLEFQDKFNKKYSHEEYLERFEIFKSNLGKIEELN :::: ...: .. . ::.: gi|178 GEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIP---RHMLFDVQMPGTVLGHITPQA 140 150 160 170 180 190 70 80 90 100 110 120 CYS1_D LIAINHKADTKFGVNKFADLSSDEFKNYYLNNKEAIFTDDLPVADYLDDEFINSIPTAFD .: . : : .: . . :... :... .: ... . . . :.:. gi|178 ALATHFPAGLPV-VCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAY- 200 210 220 230 240 130 140 150 160 170 180 CYS1_D WRTRGAVTPV---KNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEY : ... . .. : . :. : .. :. .:.. . .:: ..:.. :. gi|178 WPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVP- 250 260 270 280 290 300 190 200 210 220 230 240 CYS1_D EGEEACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTM :::: gi|178 -------PGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNY 310 320 330 340 350 360 >>gi|1789427|gb|AAC76084.1| (AE000386) orf, hypothetical (354 aa) initn: 65 init1: 40 opt: 76 Z-score: 93.5 bits: 25.8 E(): 9.1 Smith-Waterman score: 76; 22.619% identity (23.899% ungapped) in 168 aa overlap (141-303:81-244) 120 130 140 150 160 170 CYS1_D DDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNL : :. . :: : .::. . : gi|178 GDKIWQSSEYFMNVFCNNALPGPSPGEEYPSAWANIMMLLASGQDFYNQNSYTFGVTYNG 60 70 80 90 100 110 180 190 200 210 220 CYS1_D VDCDHECMEYEGEEACDEGCNGGLQPNAYNY-IIKNGGIQTESSYPYTAETGTQCNFNSA :: : . .: . ..: :.:. . .:: . . : . ... : .. : gi|178 VDYDSTSPLPIAAPVCIDIKGAGTFGNGYKKPAVCSGGPEPQLSVTFPVRV--QLYIKLA 120 130 140 150 160 230 240 250 260 270 280 CYS1_D NIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDI---PCNPN-SLD . . :... ..: .: . . .: :: .: . : : :. .: : : .:. gi|178 KNANKVNKKLVLP-DEYIALEFKGMSGAGAIEVDK-NLTFRIRGLNNIHVLDCFVNVDLE 170 180 190 200 210 220 290 300 310 320 330 340 CYS1_D HGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII . .: .. :. :: gi|178 PADGVVDFGKINSRTIKNTSVSETFSVVMTKDPGAACTEQFNILGSFFTTDILSDYSHLD 230 240 250 260 270 280 343 residues in 1 query sequences 1358987 residues in 4289 library sequences Scomplib [33t08] start: Sat Dec 8 11:43:36 2001 done: Sat Dec 8 11:43:37 2001 Scan time: 1.110 Display time: 0.090 Function used was FASTA [version 3.3t08 Jan. 17, 2001]