Index of /rsat/ext_lib/ensemblgenomes-44-97/ensembl-compara/scripts/examples

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]README2022-12-19 10:34 104  
[TXT]db_fetchAllOrthologyMethodLinkSpeciesSets.pl2022-12-19 10:35 1.4K 
[TXT]dna_accessDnaFrag.pl2022-12-19 10:35 1.6K 
[TXT]dna_accessGenomicAlignBlocks.pl2022-12-19 10:35 2.7K 
[TXT]dna_convertBasePositionsUsingBlastzAlignments.pl2022-12-19 10:35 2.5K 
[TXT]dna_getAncestralSequences.pl2022-12-19 10:35 3.6K 
[TXT]dna_getConservationScores.pl2022-12-19 10:35 2.6K 
[TXT]dna_getConstrainedElements.pl2022-12-19 10:35 3.0K 
[ ]ensembldb_reg.conf2022-12-19 10:34 226  
[TXT]family_getSizeStatistics.pl2022-12-19 10:35 1.4K 
[TXT]gene_gain_loss_tree_printAllNodes.pl2022-12-19 10:35 2.4K 
[TXT]homologyForPhylogeny.pl2022-12-19 10:35 17K 
[TXT]homology_calcMissingDNDS.pl2022-12-19 10:35 3.6K 
[TXT]homology_find_threshold_on_ds.pl2022-12-19 10:35 1.6K 
[TXT]homology_getAllBetweenSpeciesParalogues.pl2022-12-19 10:35 4.4K 
[TXT]homology_getAllOne2OneClustersBetweenSpecies.pl2022-12-19 10:35 4.9K 
[TXT]homology_getAllOne2OneIdentityPercentages.pl2022-12-19 10:35 2.2K 
[TXT]homology_getAllOrthologues.pl2022-12-19 10:35 1.5K 
[TXT]homology_getAllParalogues.pl2022-12-19 10:35 3.6K 
[TXT]homology_getOrthologueClusterForGene.pl2022-12-19 10:35 1.6K 
[TXT]homology_getPeptideAlignFeature.pl2022-12-19 10:35 1.6K 
[TXT]homology_printAllHomologueAlignementsBetween2Species.pl2022-12-19 10:35 1.9K 
[TXT]homology_projectAlignmentToExons.pl2022-12-19 10:35 5.9K 
[TXT]member_fetchMembersByCoordinates.pl2022-12-19 10:35 1.7K 
[TXT]mixed_fetchOrthologuesForMembersFromSlice.pl2022-12-19 10:35 1.9K 
[TXT]mixed_fetchblastpHitsForMembersFromSlice.pl2022-12-19 10:35 1.9K 
[TXT]mixed_filterGeneTreeWithOne2ones.pl2022-12-19 10:35 2.8K 
[TXT]mixed_getBlastAlignmentsOverlappingHomologuesWithDnaDnaAlignFeature.pl2022-12-19 10:35 3.5K 
[TXT]mixed_getBlastAlignmentsOverlappingHomologuesWithGenomicAlignBlocks.pl2022-12-19 10:35 3.5K 
[TXT]mixed_getInterproAlignments.pl2022-12-19 10:35 5.1K 
[TXT]mixed_homologyDomainConservation.pl2022-12-19 10:35 11K 
[TXT]mixed_mapHomologiesToGeneTree.pl2022-12-19 10:35 2.4K 
[TXT]species_buildSpeciesTree.pl2022-12-19 10:35 1.9K 
[TXT]species_fetchSingleGenomeDB.pl2022-12-19 10:35 1.8K 
[TXT]species_getSpeciesTree.pl2022-12-19 10:35 2.9K 
[TXT]tree_extractSubTree.pl2022-12-19 10:35 2.5K 
[TXT]tree_getDistances.pl2022-12-19 10:35 2.5K 
[TXT]tree_getSuperTrees.pl2022-12-19 10:35 1.5K 
[TXT]tree_printAlignment.pl2022-12-19 10:35 2.5K 
[ ]tuatara_source.json2022-12-19 10:35 7.5K 
[TXT]tutorial_ryo_newick.pl2022-12-19 10:35 8.6K 
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