-- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
-- Copyright [2016-2019] EMBL-European Bioinformatics Institute
-- 
-- Licensed under the Apache License, Version 2.0 (the "License");
-- you may not use this file except in compliance with the License.
-- You may obtain a copy of the License at
-- 
--      http://www.apache.org/licenses/LICENSE-2.0
-- 
-- Unless required by applicable law or agreed to in writing, software
-- distributed under the License is distributed on an "AS IS" BASIS,
-- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-- See the License for the specific language governing permissions and
-- limitations under the License.

# Updating the schema version:
UPDATE meta SET meta_value = 61 where meta_key = "schema_version";

# Add a new index to the "domain" table
alter table domain add index method_link_species_set_id (method_link_species_set_id);

# Add a new index to the "species_set" table
alter table species_set add index genome_db_id (genome_db_id);

# Add a new index to the "protein_tree_member"
alter table protein_tree_member add index method_link_species_set_id (method_link_species_set_id);

# Add a new index to the "protein_tree_member_score"
alter table protein_tree_member_score add index method_link_species_set_id (method_link_species_set_id);

# Add a new index to the "super_protein_tree_member"
alter table super_protein_tree_member add index method_link_species_set_id (method_link_species_set_id);

# Add a new index to the "nc_tree_member"
alter table nc_tree_member add index method_link_species_set_id (method_link_species_set_id);

# Modify tag column in table species_set_tag 
alter table species_set_tag modify tag varchar(50) NOT NULL;

