Index of /rsat/ext_lib/ensemblgenomes-44-97/ensembl-funcgen/modules/Bio/EnsEMBL/Funcgen/RunnableDB/PeakCalling

	Name	Last modified	Size	Description
	Parent Directory		-
	AlignFastqFile.pm	2022-12-19 10:34	6.4K
	BrIdrComputePeakCallingInputs.pm	2022-12-19 10:34	1.2K
	CallPeaks.pm	2022-12-19 10:35	7.4K
	CheckAlignmentsToYChromosome.pm	2022-12-19 10:35	1.5K
	CheckExecutionPlans.pm	2022-12-19 10:34	1.2K
	ComputeIdrPerExperiment.pm	2022-12-19 10:34	960
	ConvertBamToBed.pm	2022-12-19 10:34	3.2K
	CreateExecutionPlan.pm	2022-12-19 10:34	3.3K
	FindControlExperiments.pm	2022-12-19 10:34	3.9K
	IdrPeakThreshold.pm	2022-12-19 10:35	3.4K
	MergeBamFiles.pm	2022-12-19 10:34	1.6K
	NoIdrComputePeakCallingInputs.pm	2022-12-19 10:34	810
	PrePipelineChecks.pm	2022-12-19 10:34	17K
	QcChanceJobFactory.pm	2022-12-19 10:35	5.4K
	QcComputeProportionOfReadsInPeaks.pm	2022-12-19 10:34	2.3K
	QcFastQcJobFactory.pm	2022-12-19 10:34	1.8K
	QcFastQcLoaderJobFactory.pm	2022-12-19 10:34	1.1K
	QcFlagstatsJobFactory.pm	2022-12-19 10:35	2.4K
	QcPhantomPeaksJobFactory.pm	2022-12-19 10:35	2.0K
	QcProportionOfReadsInPeaksJobFactory.pm	2022-12-19 10:35	2.0K
	QcRunFastqc.pm	2022-12-19 10:34	1.7K
	QcStoreProportionOfReadsInPeaks.pm	2022-12-19 10:34	1.2K
	RegisterAlignment.pm	2022-12-19 10:35	6.1K
	RegisterSignal.pm	2022-12-19 10:34	1.8K
	RemoveDuplicates.pm	2022-12-19 10:34	1.7K
	RunIDR.pm	2022-12-19 10:35	9.1K
	RunPermissiveSWEmbl.pm	2022-12-19 10:34	1.5K
	SeedAllAlignments.pm	2022-12-19 10:34	682
	SeedAllControlExperimentNames.pm	2022-12-19 10:34	1.3K
	SeedAllExecutionPlans.pm	2022-12-19 10:34	772
	SeedAllPeakCallingsFromExperiment.pm	2022-12-19 10:34	590
	SeedAllSignalExperimentNames.pm	2022-12-19 10:34	847
	SeedBigWigControlJobs.pm	2022-12-19 10:34	1.6K
	SeedBigWigJobs.pm	2022-12-19 10:34	1.6K
	SeedIdrAlignments.pm	2022-12-19 10:34	619
	SeedPairwise.pm	2022-12-19 10:34	1.8K
	SeedSignalAlignments.pm	2022-12-19 10:34	1.8K
	SeedSignalProcessing.pm	2022-12-19 10:34	851
	SeedSwemblRuns.pm	2022-12-19 10:34	1.1K
	SplitByIdrStrategy.pm	2022-12-19 10:34	1.4K
	SplitExperimentReads.pm	2022-12-19 10:34	2.0K
	SplitFastq.pm	2022-12-19 10:34	7.7K
	StoreNoIdr.pm	2022-12-19 10:35	1.9K
	StorePeaks.pm	2022-12-19 10:35	5.8K
	WriteBigWig.pm	2022-12-19 10:34	3.5K