8405	2009-05-14 15:43:42	ensembl_havana_gene	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8406	2009-06-01 09:01:22	xrefexoneratedna	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8407	2009-05-14 15:43:42	havana	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8408	2007-09-07 12:01:22	est2genome_human_havana	\N	10-Nov-10 (105)	\N	\N	\N	\N	ori_analysis => Est2genome_human_raw, mode => single	ClusterDepthFilter	\N	EST_Human	similarity
8409	2007-09-07 12:01:22	vertrna_havana	\N	10-Nov-10 (105)	\N	\N	\N	\N	ori_analysis => vertrna_raw, mode => single, no_filter => 9606	ClusterDepthFilter	\N	vertebrate_mRNA	similarity
8410	2010-09-30 09:17:16	human_cdna2genome	\N	\N	\N	\N	\N	/nfs/users/nfs_j/jhv/bin/exonerate.hacked.cdna2genome	\N	Exonerate2Genes	\N	\N	\N
8411	\N	human_cdna	\N	\N	\N	exonerate	0.9.0	/usr/local/ensembl/bin/exonerate-0.9.0	\N	Exonerate2Genes	\N	Exonerate	similarity
8412	2007-09-07 12:01:22	uniprot_sw_havana	\N	2010_11	\N	\N	\N	\N	percentid_cutoff => 40, ori_analysis => Uniprot_raw, hit_db => Swissprot, mode => single	DepthFilter	\N	SwissProt	\N
8413	2009-03-11 17:25:55	human_protein	\N	refseq_40,uniprot_2010_07	\N	\N	\N	\N	\N	BestTargetted	\N	\N	\N
8414	2007-09-07 12:01:22	uniprot_tr_havana	\N	2010_11	\N	\N	\N	\N	percentid_cutoff => 40, ori_analysis => Uniprot_raw, hit_db => TrEMBL, mode => single	DepthFilter	\N	TrEMBL	\N
8415	2009-06-01 09:01:22	xrefexonerateprotein	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8416	2012-09-03 17:48:15	xrefchecksum	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8417	2013-04-02 14:50:52	pfam	Pfam	\N	/data/blastdb/Ensembl/interpro_scan/Pfam-A.hmm	/software/ensembl/bin/hmmer3/hmmscan	\N	/software/ensembl/bin/hmmer3/hmmscan	--acc --noali --cut_ga --cpu 1	ProteinAnnotation/Hmmpfam	\N	Pfam	domain
8418	2013-04-02 14:50:52	superfamily	Superfamily	\N	/data/blastdb/Ensembl/interpro_scan/superfamily.tab	/software/ensembl/bin/superfamily.pl	\N	/software/ensembl/bin/superfamily.pl	-t /tmp -m /data/blastdb/Ensembl/interpro_scan/superfamily.hmm -d /data/blastdb/Ensembl/interpro_scan/superfamily.tab -a /data/blastdb/Ensembl/interpro_scan/superfamily.acc -p /software/ensembl/bin/hmmpfam -s /software/ensembl/bin/ 1e-05 -r y	ProteinAnnotation/Superfamily	\N	Superfamily	domain
8419	2013-04-02 14:50:52	smart	Smart	\N	/data/blastdb/Ensembl/interpro_scan/smart.HMMs	hmmpfam	\N	hmmpfam	-E 0.01 -A 100 -Z 350000 --acc --cpu 1	ProteinAnnotation/Hmmpfam	\N	Smart	domain
8420	2013-04-02 14:50:51	seg	low_complexity	\N	\N	seg	\N	seg	\N	ProteinAnnotation/Seg	\N	Seg	annotation
8421	2013-04-02 14:50:52	pirsf	PIRSF	\N	/data/blastdb/Ensembl/interpro_scan/pirsf.dat	/software/ensembl/bin/pirsf.pl	\N	/software/ensembl/bin/pirsf.pl	-pirsf /data/blastdb/Ensembl/interpro_scan/pirsf.dat -sfhmm /data/blastdb/Ensembl/interpro_scan/sf_hmm.bin -subsf /data/blastdb/Ensembl/interpro_scan/sf_hmm_sub -sfseq /data/blastdb/Ensembl/interpro_scan/sf.seq -sftb /data/blastdb/Ensembl/interpro_scan/sf.tb -hmmer /software/ensembl/bin/hmmpfam -blast /software/ensembl/bin/blastall	ProteinAnnotation/PIRSF	\N	PIRSF	domain
8422	2013-04-02 14:50:52	pfscan	Prosite_profiles	\N	/data/blastdb/Ensembl/interpro_scan/prosite.profiles	pfscan	\N	pfscan	\N	ProteinAnnotation/PrositeProfile	\N	Profile	domain
8423	2013-04-02 14:50:52	signalp	signal_peptide	\N	\N	signalp	\N	/software/worm/signalp/signalp	\N	ProteinAnnotation/Signalp	\N	Signalp	annotation
8424	2010-09-23 14:40:18	ccds	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8425	2009-05-14 15:43:42	ensembl_havana_transcript	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8426	2013-04-02 14:50:51	ensembl	\N	\N	\N	\N	\N	\N	\N	GeneBuilder	\N	\N	\N
8427	2013-04-02 14:50:52	prints	Prints	\N	/data/blastdb/Ensembl/interpro_scan/prints.pval	/software//ensembl/bin/FingerPRINTScan	\N	/software/ensembl/bin/FingerPRINTScan	-e 0.0001 -d 10 -E 257043 84355444 -fjR -a -o 15	ProteinAnnotation/Prints	\N	Prints	domain
8428	2007-09-07 12:01:22	est2genome_mouse_havana	\N	10-Nov-10 (105)	\N	\N	\N	\N	ori_analysis => Est2genome_mouse_raw, mode => single	ClusterDepthFilter	\N	EST_Mouse	similarity
8429	2013-04-02 14:50:52	ncoils	coiled_coil	\N	/usr/local/ensembl/data/coils	ncoils	\N	ncoils	\N	ProteinAnnotation/Coil	\N	ncoils	annotation
8430	2009-05-12 18:26:57	ncrna	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8431	2009-05-20 12:21:05	rfamblast	Rfam	\N	/lustre/scratch1/ensembl/sw4/ncRNA/BLAST/high_copy.fasta	wublastn	\N	wublastn	lowcopy => /lustre/scratch1/ensembl/sw4/ncRNA/BLAST/low_copy.fasta	Bio::EnsEMBL::Analysis::RunnableDB::BlastRfam	\N	ensembl	gene
8432	2009-03-27 11:33:33	human_est	human_ests	\N	/lustre/work1/ensembl/jb16/NCBI37/ests/est_chunks	\N	\N	exonerate-0.9.0	\N	Exonerate2Genes	\N	\N	\N
8433	2012-03-02 14:01:07	proj_ncrna	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8434	2012-03-01 13:57:43	projected_transcript	\N	\N	\N	\N	\N	\N	\N	ProjectedTranscriptEvidence	\N	\N	\N
8435	2012-03-02 14:01:07	proj_havana	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8436	2013-04-30 11:33:07	lrg_import	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8437	2011-02-15 17:06:42	firstef	firstef	\N	\N	firstef	\N	\N	-repeatmasked	FirstEF	\N	firstef	exon
8438	2011-02-15 17:06:42	eponine	Eponine	\N	\N	eponine-scan	1	/vol/software/linux-x86_64/jdk1.6.0_01/bin/java	-epojar => /usr/local/ensembl/lib/eponine-scan.jar, -threshold => 0.999	EponineTSS	\N	Eponine	TSS
8439	2011-02-15 17:06:42	cpg	cpg	\N	\N	cpg	\N	cpg	\N	CPG	\N	cpg	cpg_island
8440	2011-02-15 17:06:42	genscan	HumanIso.smat	\N	HumanIso.smat	genscan	1.0	genscan	\N	Genscan	\N	genscan	prediction
8441	2013-07-25 14:40:18	shortnoncodingdensity	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8442	2013-07-25 14:40:18	codingdensity	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8443	2013-07-25 14:40:19	percentagerepeat	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8444	2013-07-25 14:43:46	percentgc	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8445	2013-07-25 14:43:46	pseudogenedensity	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8446	2013-07-25 14:43:46	longnoncodingdensity	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N	\N
8447	2011-02-23 14:35:10	marker	\N	\N	/lustre/scratch103/ensembl/amonida/builds/homo_sapiens/GRCh37_jan11_e62/marker_features/dumped_markers.out	e-PCR	1.2.0	\N	-M=>150,-W=>7,-NMIN=>0, -NMAX=>2	EPCR	\N	e-PCR	sts
8448	2013-07-29 09:24:09	xrefcoordinatemapping	\N	\N	\N	xref_mapper.pl	\N	\N	weights(coding,ensembl)=2.00,3.00;transcript_score_threshold=0.75	CoordinateMapper.pm	\N	\N	\N
41	2009-03-12 16:36:37	fantom_gis_pet_raw	\N	\N	\N	\N	\N	\N	\N	ExonerateTags	\N	\N	\N
42	2009-03-12 16:36:37	fantom_gsc_pet_raw	\N	\N	\N	\N	\N	\N	\N	ExonerateTags	\N	\N	\N
2	2011-02-15 17:06:42	repeatmask	repbase	3.2.5	repbase	RepeatMasker	3.2.5	/nfs/ensembl/genebuild/human_repeatmasker/RepeatMasker/RepeatMasker	-nolow -species homo -s	RepeatMasker	\N	RepeatMasker	repeat
6	2011-02-15 17:06:42	trf	\N	\N	\N	trf	\N	trf	\N	TRF	\N	trf	tandem_repeat
7	2011-02-15 17:06:42	dust	Dust	\N	\N	dust	1	tcdust	\N	Dust	\N	\N	\N