-- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
-- Copyright [2016-2019] EMBL-European Bioinformatics Institute
-- 
-- Licensed under the Apache License, Version 2.0 (the "License");
-- you may not use this file except in compliance with the License.
-- You may obtain a copy of the License at
-- 
--      http://www.apache.org/licenses/LICENSE-2.0
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-- Unless required by applicable law or agreed to in writing, software
-- distributed under the License is distributed on an "AS IS" BASIS,
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# alter some structural_variation columns and a supporting_structural_variation index

ALTER TABLE structural_variation CHANGE bound_start inner_start int(11) DEFAULT NULL;
ALTER TABLE structural_variation CHANGE bound_end inner_end int(11) DEFAULT NULL;
ALTER TABLE structural_variation ADD COLUMN class_attrib_id int(10) unsigned not null default 0;
ALTER TABLE structural_variation DROP COLUMN class;
ALTER TABLE structural_variation ADD COLUMN validation_status ENUM('validated','not validated','high quality');
ALTER TABLE structural_variation ADD INDEX attrib_idx (class_attrib_id);

ALTER TABLE supporting_structural_variation DROP INDEX name_idx;

# patch identifier
INSERT INTO meta (species_id, meta_key, meta_value) VALUES (NULL,'patch', 'patch_62_63_d.sql|alter some structural_variation columns and a supporting_structural_variation index');
