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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| IUPAC-to-regular | 2022-12-15 14:55 | 1.4K | |
| XYgraph | 2022-12-15 14:55 | 87K | |
| add-gene-info | 2022-12-15 14:55 | 9.9K | |
| add-linenb | 2022-12-15 14:55 | 3.7K | |
| alter-graph | 2022-12-15 14:55 | 22K | |
| binomial | 2022-12-15 14:55 | 4.7K | |
| binomial-series | 2022-12-15 14:55 | 5.4K | |
| calc-AUC | 2022-12-15 14:55 | 10K | |
| calc-taxfreq | 2022-12-15 14:55 | 11K | |
| calibrate-oligos | 2022-12-15 14:55 | 18K | |
| check-oligo-analysis | 2022-12-15 14:55 | 14K | |
| check-retrieve-seq-rest | 2022-12-15 14:55 | 6.1K | |
| chi-square | 2022-12-15 14:55 | 7.8K | |
| choose-background-model | 2022-12-15 14:55 | 13K | |
| classfreq | 2022-12-15 14:55 | 15K | |
| coding-or-not | 2024-07-09 08:42 | 17K | |
| colsplit | 2022-12-15 14:55 | 6.2K | |
| compare-classes | 2022-12-15 14:55 | 74K | |
| compare-features | 2022-12-15 14:55 | 38K | |
| compare-graph-clusters | 2022-12-15 14:55 | 16K | |
| compare-graphs | 2022-12-15 14:55 | 39K | |
| compare-matrices | 2022-12-15 14:55 | 135K | |
| compare-patterns | 2022-12-15 14:55 | 31K | |
| compare-profiles | 2022-12-15 14:55 | 37K | |
| compare-qualities | 2022-12-15 14:55 | 27K | |
| compare-reg-var | 2022-12-15 14:55 | 9.4K | |
| compare-score-distrib | 2022-12-15 14:55 | 17K | |
| compare-scores | 2022-12-15 14:55 | 14K | |
| compare-two-sets | 2022-12-15 14:55 | 21K | |
| compress-pattern | 2022-12-15 14:55 | 2.1K | |
| configure_rsat.pl | 2022-12-15 14:55 | 10K | |
| contingency-stats | 2022-12-15 14:55 | 19K | |
| contingency-table | 2022-12-15 14:55 | 7.5K | |
| convert-background-model | 2022-12-15 14:55 | 16K | |
| convert-classes | 2022-12-15 14:55 | 11K | |
| convert-features | 2022-12-15 14:55 | 37K | |
| convert-graph | 2022-12-15 14:55 | 24K | |
| convert-matrix | 2024-09-01 18:24 | 75K | |
| convert-metapath-seeds | 2024-07-09 08:42 | 13K | |
| convert-seq | 2024-09-01 18:24 | 19K | |
| convert-tree | 2022-12-15 14:55 | 4.2K | |
| convert-varScan | 2022-12-15 14:55 | 12K | |
| convert-variations | 2022-12-15 14:55 | 30K | |
| convert2metapath-seeds | 2024-07-09 08:42 | 9.0K | |
| count-matches | 2022-12-15 14:55 | 434 | |
| create-background-model | 2022-12-15 14:55 | 7.1K | |
| create_pathway_extractor_index.pl | 2024-07-09 08:42 | 18K | |
| deletions | 2022-12-15 14:55 | 4.2K | |
| diff-enrichment | 2022-12-15 14:55 | 5.2K | |
| differential-profile | 2022-12-15 14:55 | 17K | |
| display-graph | 2022-12-15 14:55 | 20K | |
| display-phylogeny | 2022-12-15 14:55 | 15K | |
| dna-pattern | 2022-12-15 14:55 | 53K | |
| download-ensembl-features | 2022-12-15 14:55 | 66K | |
| download-ensembl-genome | 2022-12-15 14:55 | 19K | |
| download-ensembl-go-annotations-biomart | 2022-12-15 14:55 | 7.4K | |
| download-ensembl-variations | 2022-12-15 14:55 | 57K | |
| download-organism | 2024-07-09 08:42 | 23K | |
| draw-heatmap | 2022-12-15 14:55 | 27K | |
| draw-tree | 2022-12-15 14:55 | 6.9K | |
| dyad-analysis | 2024-07-09 08:42 | 79K | |
| ec2gene | 2022-12-15 14:55 | 4.1K | |
| edit-distance | 2022-12-15 14:55 | 2.9K | |
| ensembl-org-info | 2022-12-15 14:55 | 6.5K | |
| exp-occ | 2022-12-15 14:55 | 4.6K | |
| expand-seq | 2022-12-15 14:55 | 2.5K | |
| factorial | 2022-12-15 14:55 | 1.0K | |
| feature-map | 2022-12-15 14:55 | 84K | |
| feature-map2-convert.pl | 2022-12-15 14:55 | 4.2K | |
| feature-profiles | 2022-12-15 14:55 | 11K | |
| features-from-dnapat | 2022-12-15 14:55 | 3.8K | |
| features-from-dssp | 2022-12-15 14:55 | 5.1K | |
| features-from-fugue | 2022-12-15 14:55 | 5.0K | |
| features-from-gibbs | 2022-12-15 14:55 | 4.8K | |
| features-from-matins | 2022-12-15 14:55 | 3.4K | |
| features-from-msf | 2022-12-15 14:55 | 4.2K | |
| features-from-patser | 2022-12-15 14:55 | 16K | |
| features-from-sigscan | 2022-12-15 14:55 | 3.5K | |
| features-from-swissprot | 2022-12-15 14:55 | 4.4K | |
| fetch-sequences | 2024-07-09 08:42 | 29K | |
| filter-shifts | 2022-12-15 14:55 | 7.0K | |
| fit-distribution | 2022-12-15 14:55 | 12K | |
| footprint-discovery | 2024-07-09 08:42 | 60K | |
| footprint-discovery-quality | 2022-12-15 14:55 | 27K | |
| footprint-scan | 2024-07-09 08:42 | 76K | |
| footprintdb-rest | 2025-09-18 11:34 | 5.4K | |
| fuzzy-clustering | 2022-12-15 14:55 | 13K | |
| gene-cluster-motifs | 2022-12-15 14:55 | 206K | |
| gene-info | 2022-12-15 14:55 | 10K | |
| gene-info-from-galileo | 2022-12-15 14:55 | 13K | |
| gene2ec | 2022-12-15 14:55 | 8.8K | |
| genome-blast | 2025-08-01 09:29 | 38K | |
| get-all-ensembl-seqs | 2022-12-15 14:55 | 4.8K | |
| get-ensembl-genome | 2022-12-15 14:55 | 7.5K | |
| get-ensembl-genome-no-objects.pl | 2022-12-15 14:55 | 45K | |
| get-ensembl-genome-only-objects.pl | 2022-12-15 14:55 | 46K | |
| get-ensembl-genome.pl | 2022-12-15 14:55 | 53K | |
| get-ensembl-one_chrom.pl | 2022-12-15 14:55 | 13K | |
| get-genes2reactions | 2022-12-15 14:55 | 10K | |
| get-orthologs | 2024-07-09 08:42 | 45K | |
| get-orthologs-compara | 2022-12-15 14:55 | 23K | |
| get-program-description | 2022-12-15 14:55 | 5.6K | |
| get_variation_supported_organisms.pl | 2022-12-15 14:55 | 1.7K | |
| gibbs-series | 2022-12-15 14:55 | 8.3K | |
| gibbs-to-msf | 2022-12-15 14:55 | 5.4K | |
| go-hierarchy | 2022-12-15 14:55 | 21K | |
| graph-cliques | 2022-12-15 14:55 | 10K | |
| graph-cluster-membership | 2022-12-15 14:55 | 17K | |
| graph-connex-components | 2022-12-15 14:55 | 8.6K | |
| graph-degree-weight | 2022-12-15 14:55 | 21K | |
| graph-get-clusters | 2022-12-15 14:55 | 25K | |
| graph-neighbours | 2022-12-15 14:55 | 15K | |
| graph-node-degree | 2024-07-09 08:42 | 13K | |
| graph-set-attributes | 2022-12-15 14:55 | 9.9K | |
| graph-topology | 2022-12-15 14:55 | 16K | |
| heatmap_matrix_scan_matches | 2022-12-15 14:55 | 14K | |
| html-dir | 2022-12-15 14:55 | 1.7K | |
| hypergeometric | 2022-12-15 14:55 | 3.6K | |
| infer-operon | 2024-07-09 08:42 | 27K | |
| infer-operon-leader | 2024-07-09 08:42 | 16K | |
| infer-operon-leader-multigenome | 2022-12-15 14:55 | 6.4K | |
| infer-operons | 2024-07-09 08:42 | 27K | |
| information-profile | 2022-12-15 14:55 | 7.4K | |
| insertions | 2022-12-15 14:55 | 4.2K | |
| install-ensembl-genome | 2022-12-15 14:55 | 22K | |
| install-organism | 2025-03-03 09:39 | 115K | |
| lib/ | 2025-09-18 11:34 | - | |
| load-goa | 2022-12-15 14:55 | 14K | |
| log-likelihood | 2022-12-15 14:55 | 4.0K | |
| login-statistics | 2022-12-15 14:55 | 8.7K | |
| mask-features | 2024-07-09 08:42 | 37K | |
| matrix-bg-eval | 2022-12-15 14:55 | 102K | |
| matrix-clustering | 2024-07-09 08:42 | 261K | |
| matrix-complexity | 2022-12-15 14:55 | 45K | |
| matrix-distrib | 2022-12-15 14:55 | 17K | |
| matrix-enrichment | 2022-12-15 14:55 | 57K | |
| matrix-from-align | 2022-12-15 14:55 | 3.9K | |
| matrix-from-contrast | 2022-12-15 14:55 | 3.5K | |
| matrix-from-patterns | 2024-09-01 18:24 | 44K | |
| matrix-from-transfac | 2022-12-15 14:55 | 5.5K | |
| matrix-quality | 2024-09-01 18:24 | 112K | |
| matrix-scan | 2024-09-01 18:24 | 188K | |
| matrix-symmetry | 2022-12-15 14:55 | 52K | |
| merge-matrices | 2022-12-15 14:55 | 16K | |
| merge-results | 2022-12-15 14:55 | 4.3K | |
| microcyc-get-gpr | 2022-12-15 14:55 | 6.9K | |
| mismatches | 2022-12-15 14:55 | 5.6K | |
| multiple-family-analysis | 2022-12-15 14:55 | 138 | |
| negative-binomial | 2022-12-15 14:55 | 8.6K | |
| network-interactions | 2022-12-15 14:55 | 94K | |
| network-interactions.pl | 2022-12-15 14:55 | 31K | |
| network-match-nodes | 2024-07-09 08:42 | 11K | |
| next-match | 2022-12-15 14:55 | 2.0K | |
| oligo-analysis | 2024-07-09 08:42 | 117K | |
| oligo-diff | 2022-12-15 14:55 | 25K | |
| oligo-distance-matrix | 2022-12-15 14:55 | 7.9K | |
| one-var-pos | 2022-12-15 14:55 | 1.5K | |
| ortho-dna-pattern | 2022-12-15 14:55 | 12K | |
| overlap-coeff | 2022-12-15 14:55 | 3.2K | |
| overlaps | 2022-12-15 14:55 | 5.3K | |
| palindroms | 2022-12-15 14:55 | 3.1K | |
| parse-broad-mit | 2022-12-15 14:55 | 14K | |
| parse-compara | 2022-12-15 14:55 | 15K | |
| parse-embl.pl | 2022-12-15 14:55 | 35K | |
| parse-footprinter | 2022-12-15 14:55 | 5.8K | |
| parse-genbank.pl | 2024-07-25 12:31 | 26K | |
| parse-go | 2022-12-15 14:55 | 12K | |
| parse-gtf | 2025-09-18 11:34 | 32K | |
| parse-location.pl | 2022-12-15 14:55 | 4.0K | |
| parse-oreganno | 2022-12-15 14:55 | 38K | |
| parse-psi-xml | 2022-12-15 14:55 | 10K | |
| parse-transfac | 2022-12-15 14:55 | 13K | |
| parse-transfac.pl | 2022-12-15 14:55 | 31K | |
| parsers/ | 2022-12-15 14:55 | - | |
| pathway-extractor | 2024-07-09 08:42 | 16K | |
| pathways-from-clusters | 2022-12-15 14:55 | 12K | |
| pathways-from-genome | 2025-09-18 11:34 | 63K | |
| pattern-assembly | 2022-12-15 14:55 | 32K | |
| pattern-cross-matching | 2022-12-15 14:55 | 5.8K | |
| peak-motifs | 2025-09-18 11:34 | 229K | |
| peak-motifs2 | 2025-09-18 11:34 | 228K | |
| peak-motifs_quick | 2025-09-18 11:34 | 176K | |
| peak-quality | 2025-09-18 11:34 | 32K | |
| permute-matrix | 2022-12-15 14:55 | 7.2K | |
| permute-table | 2022-12-15 14:55 | 8.6K | |
| phylo-profiles | 2022-12-15 14:55 | 30K | |
| poisson | 2022-12-15 14:55 | 8.0K | |
| position-analysis | 2022-12-15 14:55 | 94K | |
| position-scan | 2022-12-15 14:55 | 51K | |
| print-env | 2022-12-15 14:55 | 2.1K | |
| process-pathwayextractor-output | 2024-07-09 08:42 | 10K | |
| profile-distance | 2022-12-15 14:55 | 16K | |
| purgatory/ | 2022-12-15 14:55 | - | |
| purge-sequence | 2022-12-15 14:55 | 14K | |
| quantiles | 2022-12-15 14:55 | 12K | |
| queue-commands | 2022-12-15 14:55 | 6.3K | |
| random-genes | 2022-12-15 14:55 | 10K | |
| random-genome-fragments | 2022-12-15 14:55 | 31K | |
| random-graph | 2022-12-15 14:55 | 23K | |
| random-peaks | 2022-12-15 14:55 | 35K | |
| random-seq | 2022-12-15 14:55 | 22K | |
| random-seq-select | 2022-12-15 14:55 | 9.3K | |
| replace-string | 2022-12-15 14:55 | 5.5K | |
| rescan-matrix | 2022-12-15 14:55 | 13K | |
| retrieve-ensembl-go | 2022-12-15 14:55 | 10K | |
| retrieve-ensembl-seq | 2022-12-15 14:55 | 76K | |
| retrieve-ensembl-seq-norsat.pl | 2022-12-15 14:55 | 36K | |
| retrieve-matrix | 2022-12-15 14:55 | 8.3K | |
| retrieve-prot | 2025-09-18 11:34 | 6.8K | |
| retrieve-seq | 2024-07-09 08:42 | 33K | |
| retrieve-seq-UCSC | 2022-12-15 14:55 | 23K | |
| retrieve-seq-bed | 2022-12-15 14:55 | 17K | |
| retrieve-seq-multigenome | 2024-07-09 08:42 | 10K | |
| retrieve-seq-quick | 2022-12-15 14:55 | 9.5K | |
| retrieve-snp-seq | 2022-12-15 14:55 | 19K | |
| retrieve-variation-seq1.0 | 2022-12-15 14:55 | 23K | |
| reverse-complement | 2022-12-15 14:55 | 7.3K | |
| roc-stats | 2022-12-15 14:55 | 53K | |
| roc-stats2 | 2022-12-15 14:55 | 23K | |
| row-stats | 2022-12-15 14:55 | 8.6K | |
| rsat-doc-generator | 2022-12-15 14:55 | 7.5K | |
| search4metapath-seeds | 2024-07-09 08:42 | 9.7K | |
| select-clustering | 2022-12-15 14:55 | 13K | |
| send-mail | 2025-04-04 12:54 | 6.4K | |
| seq-distances | 2022-12-15 14:55 | 5.7K | |
| seq-logo | 2022-12-15 14:55 | 5.9K | |
| seq-proba | 2022-12-15 14:55 | 10K | |
| seq-select | 2025-03-03 09:39 | 7.6K | |
| sequence-lengths | 2022-12-15 14:55 | 7.6K | |
| snp-scan | 2022-12-15 14:55 | 17K | |
| sort-by-taxonomy | 2022-12-15 14:55 | 9.1K | |
| spaces-to-tab | 2022-12-15 14:55 | 789 | |
| split-chromosomes | 2022-12-15 14:55 | 4.6K | |
| split-column | 2022-12-15 14:55 | 5.0K | |
| split-matrix | 2022-12-15 14:55 | 27K | |
| stats | 2022-12-15 14:55 | 5.4K | |
| sub-sequence | 2022-12-15 14:55 | 14K | |
| substitutions | 2022-12-15 14:55 | 4.7K | |
| substract-origin | 2022-12-15 14:55 | 4.0K | |
| supported-metabolic-networks | 2022-12-15 14:55 | 5.8K | |
| supported-motif-databases | 2025-03-03 09:39 | 6.4K | |
| supported-organisms | 2025-03-03 09:39 | 13K | |
| supported-organisms-ensembl | 2022-12-15 14:55 | 5.0K | |
| supported-organisms-ensemblgenomes | 2022-12-15 14:55 | 8.9K | |
| supported-organisms-galileo | 2022-12-15 14:55 | 7.9K | |
| supported-organisms-metab | 2022-12-15 14:55 | 4.9K | |
| supported-organisms-microcyc | 2022-12-15 14:55 | 8.7K | |
| supported-organisms-plots | 2025-01-24 18:40 | 18K | |
| supported-organisms-server | 2022-12-15 14:55 | 11K | |
| supported-organisms-ucsc | 2023-11-27 12:10 | 6.6K | |
| supported-organisms-ucsc.pl | 2022-12-15 14:55 | 6.7K | |
| supported-organisms-with-variations | 2022-12-15 14:55 | 6.1K | |
| taxon-frequencies | 2022-12-15 14:55 | 30K | |
| template | 2022-12-15 14:55 | 5.2K | |
| text-to-html | 2022-12-15 14:55 | 8.7K | |
| text-to-latex | 2022-12-15 14:55 | 8.0K | |
| transpose-table | 2022-12-15 14:55 | 4.2K | |
| upgrade-organism-ensemblgenomes | 2022-12-15 14:55 | 7.3K | |
| variation-info | 2022-12-15 14:55 | 29K | |
| variation-info_REST | 2022-12-15 14:55 | 22K | |
| variation-scan1.0 | 2022-12-15 14:55 | 52K | |
| waterman-parameters | 2022-12-15 14:55 | 4.4K | |
| word-occurrences | 2022-12-15 14:55 | 5.3K | |