; parse-gtf  -v 2 -i $RSAT/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40.gtf -fasta $RSAT/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40.pep.all.fa -org_name Cucumis_sativus.ASM407v2.40 -task all -taxid 3659 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome
; Program version       	1.48
; Input files
;	fasta_rm     	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40.dna_rm.genome.fa
;	gtf          	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40.gtf
;	fasta        	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40.dna.toplevel.fa
;	fasta_pep    	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40.pep.all.fa
; Output files
;	peptidic_sequences	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/peptidic_sequences.fasta
;	contigs_txt_rm	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/contigs_rm.txt
;	tts_gtf      	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40_tts.gtf
;	gene_gtf     	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40_gene.gtf
;	contig_rm    	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/contig_rm.tab
;	gene         	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/gene.tab
;	stop_codon_gtf	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40_stop_codon.gtf
;	transcript   	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/transcript.tab
;	gene_start_gtf	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40_gene_start.gtf
;	gene_end_gtf 	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40_gene_end.gtf
;	cds          	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/cds.tab
;	three_prime_utr_gtf	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40_three_prime_utr.gtf
;	log          	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/log.txt
;	exon         	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/exon.tab
;	organism     	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/organism.tab
;	contig       	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/contig.tab
;	tss_gtf      	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40_tss.gtf
;	stop_codon   	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/stop_codon.tab
;	start_codon_gtf	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40_start_codon.gtf
;	five_prime_utr_gtf	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40_five_prime_utr.gtf
;	transcript_gtf	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40_transcript.gtf
;	fasta_lengths	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40.dna.toplevel_lengths.tab
;	start_codon  	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/start_codon.tab
;	contigs_txt  	/var/www/html/rsat/public_html/data/genomes/Cucumis_sativus.ASM407v2.40/genome/contigs.txt
;	fasta_pep_lengths	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40.pep.all_lengths.tab
;	fasta_rm_lengths	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40.dna_rm.genome_lengths.tab
;	exon_gtf     	/var/www/html/rsat/data/genomes/Cucumis_sativus.ASM407v2.40/genome/Cucumis_sativus.ASM407v2.40_exon.gtf
; Parsed rows per feature type
;	cds          	115862
;	exon         	116175
;	five_prime_utr	13619
;	gene         	24079
;	start_codon  	23786
;	stop_codon   	14113
;	three_prime_utr	14550
;	transcript   	24079
; Parsed rows per contig
;	Contig       	Total	cds	exon	five_prime_utr	gene	start	stop	three_prime_utr	transcript
;	1            	51241	17217	17265	1968	3545	3498	2101	2102	3545
;	2            	43172	14497	14540	1702	2977	2934	1723	1822	2977
;	3            	72078	24202	24254	2860	4964	4916	2840	3078	4964
;	4            	41128	13693	13730	1653	2883	2849	1701	1736	2883
;	5            	45766	15225	15277	1770	3228	3178	1965	1895	3228
;	6            	57592	19266	19314	2310	3995	3952	2295	2465	3995
;	7            	35286	11762	11795	1356	2487	2459	1488	1452	2487
; Host name	baobab.eead.csic.es
; Job started	2018-09-14.164414
; Job done	2018-09-14.192013
; Seconds	42.05
;	user	42.05
;	system	2.99
;	cuser	9237.49
;	csystem	111.29