; parse-gtf -v 2 -i $RSAT/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62.gtf -fasta $RSAT/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62.pep.all.fa -org_name Komagataella_pastoris.GCA_000027005.1.62 -task all -taxid 644223 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62.dna_rm.genome.fa ; fasta_pep /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62.pep.all.fa ; gtf /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62.gtf ; fasta /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62.dna.toplevel.fa ; Output files ; log /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/log.txt ; gene /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/gene.tab ; exon /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/exon.tab ; fasta_lengths /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62.dna.toplevel_lengths.tab ; stop_codon /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/stop_codon.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62.dna_rm.genome_lengths.tab ; tss_gtf /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62_tss.gtf ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/contigs_rm.txt ; start_codon /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/start_codon.tab ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62_five_prime_utr.gtf ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62_three_prime_utr.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/cds.tab ; exon_gtf /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62_exon.gtf ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/peptidic_sequences.fasta ; organism /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/organism.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62_stop_codon.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62_gene.gtf ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/contigs.txt ; transcript_gtf /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62_transcript.gtf ; tts_gtf /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62_tts.gtf ; gene_start_gtf /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62_gene_start.gtf ; contig_rm /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/contig_rm.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62_start_codon.gtf ; contig /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/contig.tab ; transcript /var/www/html/rsat/public_html/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/transcript.tab ; gene_end_gtf /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62_gene_end.gtf ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Komagataella_pastoris.GCA_000027005.1.62/genome/Komagataella_pastoris.GCA_000027005.1.62.pep.all_lengths.tab ; Parsed rows per feature type ; 5401 ; cds 5618 ; chromosome 4 ; exon 5970 ; gene 5040 ; mirna 2 ; mrna 5040 ; ncrna_gene 352 ; rnase_mrp_rna 1 ; rnase_p_rna 2 ; rrna 35 ; snorna 59 ; snrna 8 ; srp_rna 2 ; trna 243 ; Parsed rows per contig ; Contig Total cds chromosome exon gene mirna mrna ncrna_gene rnase_mrp_rna rnase_p_rna rrna snorna snrna srp_rna trna ; ### 5396 5396 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ; ##gff-version 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ; ##sequence-region 1 1 2798491 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ; ##sequence-region 2 1 2394163 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ; ##sequence-region 3 1 2245428 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ; ##sequence-region 4 1 1778296 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ; 1 6942 0 1727 1 1864 1538 2 1538 137 0 0 11 12 5 2 105 ; 2 5776 0 1475 1 1528 1333 0 1333 53 1 0 7 9 3 0 33 ; 3 5329 0 1346 1 1426 1198 0 1198 80 0 0 6 14 0 0 60 ; 4 4329 0 1070 1 1152 971 0 971 82 0 2 11 24 0 0 45 ; Host name baobab ; Job started 2026-01-07.084627 ; Job done 2026-01-07.085223 ; Seconds 1.8 ; user 1.8 ; system 0.12 ; cuser 395.78 ; csystem 41.47