; parse-gtf -v 2 -i $RSAT/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40.gtf -fasta $RSAT/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40.pep.all.fa -org_name Prunus_persica.Prunus_persica_NCBIv2.40 -task all -taxid 3760 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40.gtf ; fasta /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40.dna.toplevel.fa ; fasta_pep /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40.pep.all.fa ; Output files ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/peptidic_sequences.fasta ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/contigs_rm.txt ; tts_gtf /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40_tts.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40_gene.gtf ; contig_rm /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/contig_rm.tab ; gene /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/gene.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40_stop_codon.gtf ; transcript /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/transcript.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40_gene_start.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40_gene_end.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/cds.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40_three_prime_utr.gtf ; log /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/log.txt ; exon /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/exon.tab ; organism /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/organism.tab ; contig /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/contig.tab ; tss_gtf /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40_tss.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/stop_codon.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40_start_codon.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40_five_prime_utr.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40_transcript.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40.dna.toplevel_lengths.tab ; start_codon /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/start_codon.tab ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/contigs.txt ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40.pep.all_lengths.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40.dna_rm.genome_lengths.tab ; exon_gtf /var/www/html/rsat/data/genomes/Prunus_persica.Prunus_persica_NCBIv2.40/genome/Prunus_persica.Prunus_persica_NCBIv2.40_exon.gtf ; Parsed rows per feature type ; cds 292568 ; exon 292924 ; five_prime_utr 34996 ; gene 27107 ; start_codon 46859 ; stop_codon 23075 ; three_prime_utr 35970 ; transcript 47323 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; G1 181223 66584 66646 7903 5929 10480 4971 8148 10562 ; G2 98202 35749 35789 4301 3325 5835 2911 4397 5895 ; G3 94467 34577 34617 4089 3188 5475 2773 4206 5542 ; G4 85640 31314 31364 3673 2922 5002 2532 3774 5059 ; G5 72839 26483 26530 3282 2498 4293 2050 3356 4347 ; G6 108310 39524 39586 4718 3702 6341 3195 4837 6407 ; G7 81988 29998 30019 3609 2735 4768 2333 3722 4804 ; G8 77274 28058 28091 3384 2745 4596 2274 3492 4634 ; scaffold_112 111 48 48 2 1 4 2 2 4 ; scaffold_116 18 4 4 2 2 2 0 2 2 ; scaffold_12 8 2 2 0 1 1 0 1 1 ; scaffold_13 74 30 30 2 3 3 2 1 3 ; scaffold_139 10 3 3 0 1 1 1 0 1 ; scaffold_141 14 3 3 1 2 1 0 2 2 ; scaffold_151 8 1 1 1 1 1 1 1 1 ; scaffold_156 16 6 6 0 1 1 1 0 1 ; scaffold_161 10 3 3 0 1 1 1 0 1 ; scaffold_169 11 3 3 0 1 1 1 1 1 ; scaffold_18 14 3 3 0 2 2 2 0 2 ; scaffold_182 22 9 9 0 1 1 0 1 1 ; scaffold_19 79 22 22 5 6 8 4 4 8 ; scaffold_191 9 2 2 1 1 1 0 1 1 ; scaffold_192 14 3 3 0 2 2 2 0 2 ; scaffold_20 25 6 6 1 3 3 2 1 3 ; scaffold_203 15 5 5 0 1 1 1 1 1 ; scaffold_21 72 29 29 3 2 3 0 3 3 ; scaffold_23 6 1 1 0 1 1 1 0 1 ; scaffold_24 8 2 2 0 1 1 1 0 1 ; scaffold_26 30 8 8 3 2 3 0 3 3 ; scaffold_271 10 3 3 0 1 1 1 0 1 ; scaffold_30 39 8 8 3 4 5 3 3 5 ; scaffold_33 12 2 2 0 2 2 2 0 2 ; scaffold_35 14 2 2 2 2 2 0 2 2 ; scaffold_42 38 8 8 4 4 4 2 4 4 ; scaffold_51 37 13 13 0 3 2 3 0 3 ; scaffold_53 7 1 1 1 1 1 0 1 1 ; scaffold_60 21 8 8 1 1 1 0 1 1 ; scaffold_61 14 5 5 0 1 1 0 1 1 ; scaffold_68 16 6 6 0 1 1 1 0 1 ; scaffold_71 22 6 6 2 2 2 0 1 3 ; scaffold_72 28 12 12 0 1 1 1 0 1 ; scaffold_73 7 1 1 1 1 1 0 1 1 ; scaffold_97 40 13 14 2 3 3 1 0 4 ; Host name baobab.eead.csic.es ; Job started 2018-09-24.024640 ; Job done 2018-09-24.055719 ; Seconds 73.54 ; user 73.54 ; system 9.73 ; cuser 10976.23 ; csystem 302.19