peak-motifs Sharp

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=142.01; evalue=9.8e-143

atatATAwATAyAtayata

TATRTATRTATWTATATAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atatATAwATAyAtayata

7185_AHL12_3_ArabidopsisPBM_20140210_ 7185_AHL12_3_ArabidopsisPBM_20140210_ R 10 0.5263 0.773 0.407 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 761 (9.31%)
Max nb of predicted sites per peak: 29
(GWHCAYC00000018:25106059-25106160(-))
Mean nb of predicted sites per peak: 4.86

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=60.32; evalue=4.8e-61

rrGaAGAaAGArrrr

YYYYTCTTTCTTCYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGaAGAaAGArrrr

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1312 (16.05%)
Max nb of predicted sites per peak: 5
(GWHCAYC00000010:49776381-49776482(-))
Mean nb of predicted sites per peak: 1.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=50.40; evalue=4e-51

mmmCcAAACCCTAactmkc

GMKAGTTAGGGTTTGGKKK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mmmCcAAACCCTAactmkc

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 399 (4.88%)
Max nb of predicted sites per peak: 3
(GWHCAYC00000003:43180331-43180432(+))
Mean nb of predicted sites per peak: 1.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=32.68; evalue=2.1e-33

gdktGaGTGaGTkdg

CHMACTCACTCAMHC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gdktGaGTGaGTkdg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1095 (13.39%)
Max nb of predicted sites per peak: 16
(GWHCAYC00000014:7213798-7213899(+))
Mean nb of predicted sites per peak: 1.77

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=30.73; evalue=1.9e-31

atAkATAkATAta

TATATMTATMTAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atAkATAkATAta

7185_AHL12_3_ArabidopsisPBM_20140210_ 7185_AHL12_3_ArabidopsisPBM_20140210_ R 10 0.7692 0.711 0.547 NA NA

7210_CCA1_2_ArabidopsisPBM_20140210_ 7210_CCA1_2_ArabidopsisPBM_20140210_ D 8 0.5333 0.751 0.400 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 784 (9.59%)
Max nb of predicted sites per peak: 28
(GWHCAYC00000020:2724015-2724116(+))
Mean nb of predicted sites per peak: 4.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=300; evalue=1e-300

stctCTATAaAaammm

KKKTTTTTATAGAGAS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor stctCTATAaAaammm

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1637 (20.02%)
Max nb of predicted sites per peak: 26
(GWHCAYC00000018:25106059-25106160(-))
Mean nb of predicted sites per peak: 2.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=300; evalue=1e-300

ktmtmTATATATtataGakrr

YYMTCTATAATATATAKAKAM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ktmtmTATATATtataGakrr

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 978 (11.96%)
Max nb of predicted sites per peak: 23
(GWHCAYC00000018:25106059-25106160(-))
Mean nb of predicted sites per peak: 2.57

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=300; evalue=1e-300

atwTwTATaTATATAtATAwAwat

ATWTWTATATATATATATAWAWAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atwTwTATaTATATAtATAwAwat

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 330 (4.04%)
Max nb of predicted sites per peak: 28
(GWHCAYC00000018:25106059-25106160(-))
Mean nb of predicted sites per peak: 8.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=300; evalue=1e-300

grGarrraGAGAGARaGararrrr

YYYYTYTCTYTCTCTCTYYYTCYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grGarrraGAGAGARaGararrrr

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1608 (19.67%)
Max nb of predicted sites per peak: 35
(GWHCAYC00000006:17715779-17715880(+))
Mean nb of predicted sites per peak: 3.95

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=300; evalue=1e-300

kgtayTTATAGagrg

CYCTCTATAARTACM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kgtayTTATAGagrg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1595 (19.51%)
Max nb of predicted sites per peak: 26
(GWHCAYC00000018:25106059-25106160(-))
Mean nb of predicted sites per peak: 2.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m1

k-mer sig=66.84; evalue=1.4e-67

ymtaAACCCTAryyc

GRRYTAGGGTTTAKR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymtaAACCCTAryyc

7273_TOE1_3_ArabidopsisPBM_20140210_ 7273_TOE1_3_ArabidopsisPBM_20140210_ D 10 0.6667 0.740 0.493 NA NA

7276_TOE2_3_ArabidopsisPBM_20140210_ 7276_TOE2_3_ArabidopsisPBM_20140210_ D 10 0.6667 0.715 0.477 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 477 (5.83%)
Max nb of predicted sites per peak: 2
(GWHCAYC00000020:32555250-32555351(-))
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m2

k-mer sig=61.65; evalue=2.2e-62

ysyCTATAwATAcmc

GKGTATWTATAGRSR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ysyCTATAwATAcmc

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1524 (18.64%)
Max nb of predicted sites per peak: 26
(GWHCAYC00000018:25106059-25106160(-))
Mean nb of predicted sites per peak: 2.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m3

k-mer sig=66.84; evalue=1.4e-67

ymtaAACCCTAGyt

ARCTAGGGTTTAKR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymtaAACCCTAGyt

7264_STY1_ArabidopsisPBM_20140210_ 7264_STY1_ArabidopsisPBM_20140210_ R 9 0.6000 0.737 0.442 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 484 (5.92%)
Max nb of predicted sites per peak: 2
(GWHCAYC00000020:43044110-43044211(-))
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m4

k-mer sig=20.65; evalue=2.2e-21

GaGAGARAGAGaG

CTCTCTYTCTCTC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GaGAGARAGAGaG

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1384 (16.93%)
Max nb of predicted sites per peak: 31
(GWHCAYC00000006:40702432-40702533(-))
Mean nb of predicted sites per peak: 3.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv4_m5

k-mer sig=66.84; evalue=1.4e-67

maaaacaaAACCCTAayyc

GRRTTAGGGTTTTGTTTTK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maaaacaaAACCCTAayyc

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 440 (5.38%)
Max nb of predicted sites per peak: 3
(GWHCAYC00000020:32555250-32555351(-))
Mean nb of predicted sites per peak: 1.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=300; evalue=1e-300

atataTaTaTATATATAtAtatat

ATATATATATATATATATATATAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atataTaTaTATATATAtAtatat

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 409 (5.00%)
Max nb of predicted sites per peak: 29
(GWHCAYC00000011:18250534-18250635(-))
Mean nb of predicted sites per peak: 7.88

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=300; evalue=1e-300

atmtmTATATATAwawayat

ATRTWTWTATATATAKAKAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atmtmTATATATAwawayat

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 808 (9.88%)
Max nb of predicted sites per peak: 28
(GWHCAYC00000018:25106059-25106160(-))
Mean nb of predicted sites per peak: 4.92

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=300; evalue=1e-300

atmymTATAwATAtatata

TATATATATWTATAKRKAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atmymTATAwATAtatata

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1104 (13.50%)
Max nb of predicted sites per peak: 26
(GWHCAYC00000018:25106059-25106160(-))
Mean nb of predicted sites per peak: 3.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=74.93; evalue=1.2e-75

GaGAGAGAGARAGaragr

YCTYTCTYTCTCTCTCTC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GaGAGAGAGARAGaragr

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1411 (17.26%)
Max nb of predicted sites per peak: 32
(GWHCAYC00000006:40702432-40702533(-))
Mean nb of predicted sites per peak: 3.95

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=300; evalue=1e-300

krtrTATATATAkakrk

MYMTMTATATATAYAYM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krtrTATATATAkakrk

7185_AHL12_3_ArabidopsisPBM_20140210_ 7185_AHL12_3_ArabidopsisPBM_20140210_ R 10 0.5882 0.703 0.414 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1224 (14.97%)
Max nb of predicted sites per peak: 28
(GWHCAYC00000018:25106059-25106160(-))
Mean nb of predicted sites per peak: 4.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus ArabidopsisPBM database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: Sharp_promoter (02/01/2025 10:20)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atatATAwATAyAtayata

7185_AHL12_3_ArabidopsisPBM_20140210_ 7185_AHL12_3_ArabidopsisPBM_20140210_ R 10 0.5263 0.773 0.407 NA NA

Total matches= 1

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGaAGAaAGArrrr

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mmmCcAAACCCTAactmkc

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gdktGaGTGaGTkdg

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor stctCTATAaAaammm

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ktmtmTATATATtataGakrr

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atwTwTATaTATATAtATAwAwat

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grGarrraGAGAGARaGararrrr

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kgtayTTATAGagrg

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ysyCTATAwATAcmc

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymtaAACCCTAGyt

7264_STY1_ArabidopsisPBM_20140210_ 7264_STY1_ArabidopsisPBM_20140210_ R 9 0.6000 0.737 0.442 NA NA

Total matches= 1

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GaGAGARAGAGaG

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maaaacaaAACCCTAayyc

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atataTaTaTATATATAtAtatat

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atmtmTATATATAwawayat

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atmymTATAwATAtatata

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GaGAGAGAGARAGaragr

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krtrTATATATAkakrk

7185_AHL12_3_ArabidopsisPBM_20140210_ 7185_AHL12_3_ArabidopsisPBM_20140210_ R 10 0.5882 0.703 0.414 NA NA

Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: Sharp_promoter (02/01/2025 10:20)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor atatATAwATAyAtayata 7185_AHL12_3_ArabidopsisPBM_20140210_ 7185_AHL12_3_ArabidopsisPBM_20140210_ R 10 0.5263 0.773 0.407 NA NA Total matches= 1

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rrGaAGAaAGArrrr Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor mmmCcAAACCCTAactmkc Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor gdktGaGTGaGTkdg Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor stctCTATAaAaammm Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ktmtmTATATATtataGakrr Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor atwTwTATaTATATAtATAwAwat Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor grGarrraGAGAGARaGararrrr Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor kgtayTTATAGagrg Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ysyCTATAwATAcmc Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ymtaAACCCTAGyt 7264_STY1_ArabidopsisPBM_20140210_ 7264_STY1_ArabidopsisPBM_20140210_ R 9 0.6000 0.737 0.442 NA NA Total matches= 1

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor GaGAGARAGAGaG Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor maaaacaaAACCCTAayyc Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor atataTaTaTATATATAtAtatat Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor atmtmTATATATAwawayat Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor atmymTATAwATAtatata Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor GaGAGAGAGARAGaragr Total matches= 0

ArabidopsisPBM name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor krtrTATATATAkakrk 7185_AHL12_3_ArabidopsisPBM_20140210_ 7185_AHL12_3_ArabidopsisPBM_20140210_ R 10 0.5882 0.703 0.414 NA NA Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atatATAwATAyAtayata

7185_AHL12_3_ArabidopsisPBM_20140210_ 7185_AHL12_3_ArabidopsisPBM_20140210_ R 10 0.5263 0.773 0.407 NA NA

Total matches= 1

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGaAGAaAGArrrr

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mmmCcAAACCCTAactmkc

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gdktGaGTGaGTkdg

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor stctCTATAaAaammm

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ktmtmTATATATtataGakrr

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atwTwTATaTATATAtATAwAwat

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grGarrraGAGAGARaGararrrr

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kgtayTTATAGagrg

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ysyCTATAwATAcmc

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymtaAACCCTAGyt

7264_STY1_ArabidopsisPBM_20140210_ 7264_STY1_ArabidopsisPBM_20140210_ R 9 0.6000 0.737 0.442 NA NA

Total matches= 1

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GaGAGARAGAGaG

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maaaacaaAACCCTAayyc

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atataTaTaTATATATAtAtatat

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atmtmTATATATAwawayat

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atmymTATAwATAtatata

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor GaGAGAGAGARAGaragr

Total matches= 0

ArabidopsisPBM

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krtrTATATATAkakrk

7185_AHL12_3_ArabidopsisPBM_20140210_ 7185_AHL12_3_ArabidopsisPBM_20140210_ R 10 0.5882 0.703 0.414 NA NA

Total matches= 1