/var/www/html/rsat/public_html/tmp/www-data/2025/01/04/peak-motifs.2025-01-04.142224_2025-01-04.142224_E5wRbl/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/01/04/peak-motifs.2025-01-04.142224_2025-01-04.142224_E5wRbl/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title p53_peaks -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/01/04/peak-motifs.2025-01-04.142224_2025-01-04.142224_E5wRbl/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/01/04/peak-motifs.2025-01-04.142224_2025-01-04.142224_E5wRbl/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/01/04/peak-motifs.2025-01-04.142224_2025-01-04.142224_E5wRbl/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	169
	Sum of sequence lengths      	36481
	Min sequence length          	0
	Max sequence length          	844
	Average sequence length      	215
	Possible positions           	36312
 Oligonucleotide statistics:
	Total occurrences    	31433
 Position interval parameters:
	Position interval    	20
	Number of windows    	44
	Total positions      	36312
	Degrees of freedom   	43
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-22	[-439,-420]	-429.5	1	2
	2	-21	[-419,-400]	-409.5	1	20
	3	-20	[-399,-380]	-389.5	2	23
	4	-19	[-379,-360]	-369.5	3	46
	5	-18	[-359,-340]	-349.5	3	60
	6	-17	[-339,-320]	-329.5	3	60
	7	-16	[-319,-300]	-309.5	3	60
	8	-15	[-299,-280]	-289.5	5	85
	9	-14	[-279,-260]	-269.5	7	111
	10	-13	[-259,-240]	-249.5	10	180
	11	-12	[-239,-220]	-229.5	15	271
	12	-11	[-219,-200]	-209.5	25	396
	13	-10	[-199,-180]	-189.5	33	569
	14	-9	[-179,-160]	-169.5	44	761
	15	-8	[-159,-140]	-149.5	56	991
	16	-7	[-139,-120]	-129.5	61	1188
	17	-6	[-119,-100]	-109.5	76	1383
	18	-5	[-99,-80]	-89.5	86	1614
	19	-4	[-79,-60]	-69.5	103	1862
	20	-3	[-59,-40]	-49.5	128	2232
	21	-2	[-39,-20]	-29.5	169	3037
	22	-1	[-19,0]	-9.5	169	3380
	23	0	[1,20]	10.5	169	3380
	24	1	[21,40]	30.5	169	2950
	25	2	[41,60]	50.5	124	2188
	26	3	[61,80]	70.5	101	1831
	27	4	[81,100]	90.5	86	1592
	28	5	[101,120]	110.5	74	1349
	29	6	[121,140]	130.5	61	1175
	30	7	[141,160]	150.5	55	966
	31	8	[161,180]	170.5	43	737
	32	9	[181,200]	190.5	33	551
	33	10	[201,220]	210.5	24	375
	34	11	[221,240]	230.5	15	261
	35	12	[241,260]	250.5	10	174
	36	13	[261,280]	270.5	7	107
	37	14	[281,300]	290.5	5	80
	38	15	[301,320]	310.5	3	60
	39	16	[321,340]	330.5	3	60
	40	17	[341,360]	350.5	3	60
	41	18	[361,380]	370.5	3	43
	42	19	[381,400]	390.5	2	21
	43	20	[401,420]	410.5	1	20
	44	21	[421,440]	430.5	1	1

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-429.5         	occurrences in window	1	[-439,-420]
	11	-409.5         	occurrences in window	2	[-419,-400]
	12	-389.5         	occurrences in window	3	[-399,-380]
	13	-369.5         	occurrences in window	4	[-379,-360]
	14	-349.5         	occurrences in window	5	[-359,-340]
	15	-329.5         	occurrences in window	6	[-339,-320]
	16	-309.5         	occurrences in window	7	[-319,-300]
	17	-289.5         	occurrences in window	8	[-299,-280]
	18	-269.5         	occurrences in window	9	[-279,-260]
	19	-249.5         	occurrences in window	10	[-259,-240]
	20	-229.5         	occurrences in window	11	[-239,-220]
	21	-209.5         	occurrences in window	12	[-219,-200]
	22	-189.5         	occurrences in window	13	[-199,-180]
	23	-169.5         	occurrences in window	14	[-179,-160]
	24	-149.5         	occurrences in window	15	[-159,-140]
	25	-129.5         	occurrences in window	16	[-139,-120]
	26	-109.5         	occurrences in window	17	[-119,-100]
	27	-89.5          	occurrences in window	18	[-99,-80]
	28	-69.5          	occurrences in window	19	[-79,-60]
	29	-49.5          	occurrences in window	20	[-59,-40]
	30	-29.5          	occurrences in window	21	[-39,-20]
	31	-9.5           	occurrences in window	22	[-19,0]
	32	10.5           	occurrences in window	23	[1,20]
	33	30.5           	occurrences in window	24	[21,40]
	34	50.5           	occurrences in window	25	[41,60]
	35	70.5           	occurrences in window	26	[61,80]
	36	90.5           	occurrences in window	27	[81,100]
	37	110.5          	occurrences in window	28	[101,120]
	38	130.5          	occurrences in window	29	[121,140]
	39	150.5          	occurrences in window	30	[141,160]
	40	170.5          	occurrences in window	31	[161,180]
	41	190.5          	occurrences in window	32	[181,200]
	42	210.5          	occurrences in window	33	[201,220]
	43	230.5          	occurrences in window	34	[221,240]
	44	250.5          	occurrences in window	35	[241,260]
	45	270.5          	occurrences in window	36	[261,280]
	46	290.5          	occurrences in window	37	[281,300]
	47	310.5          	occurrences in window	38	[301,320]
	48	330.5          	occurrences in window	39	[321,340]
	49	350.5          	occurrences in window	40	[341,360]
	50	370.5          	occurrences in window	41	[361,380]
	51	390.5          	occurrences in window	42	[381,400]
	52	410.5          	occurrences in window	43	[401,420]
	53	430.5          	occurrences in window	44	[421,440]
seq id occ chi2 df Pval Eval sig rank -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5
aa aa 2481 131.4 43 7.0e-11 1.1e-09 8.95 1 0 1 0 2 1 3 3 5 10 16 28 24 45 62 87 91 88 119 131 170 159 164 207 160 126 117 130 120 135 86 56 38 28 19 14 15 5 1 4 4 4 3 0 0
tt tt 2344 99.0 43 2.7e-06 4.3e-05 4.37 2 2 3 6 8 4 3 2 8 5 18 28 32 52 55 66 72 133 98 110 144 158 209 182 140 118 130 99 97 99 75 61 26 29 22 17 5 4 7 1 6 9 0 1 0
cc cc 2115 67.2 43 1.0e-02 0.17 0.78 3 0 0 2 5 4 3 5 3 10 16 20 25 29 44 58 74 89 126 126 164 174 239 172 147 112 96 86 58 55 44 43 27 17 7 8 7 2 3 7 2 5 0 1 0
ta ta 1482 66.8 43 1.2e-02 0.19 0.73 4 0 2 0 0 1 2 3 2 2 6 19 16 24 42 48 52 66 61 91 66 109 120 108 113 76 65 65 76 59 58 42 24 20 12 12 4 4 4 1 3 3 1 0 0
gg gg 2327 65.9 43 1.4e-02 0.22 0.66 5 0 1 2 1 6 6 5 12 6 14 18 23 32 47 58 85 74 103 107 119 192 194 245 183 144 123 102 78 84 66 40 46 21 29 19 8 15 8 6 2 0 2 1 0
tc tc 1762 56.8 43 7.7e-02 1.2 -0.09 6 0 2 1 3 7 6 3 9 7 13 14 30 40 40 57 61 81 92 92 104 149 183 125 120 93 72 73 50 49 55 50 24 18 10 9 2 2 5 2 5 0 1 3 0
ac ac 1580 56.0 43 8.8e-02 1.4 -0.15 7 0 0 1 2 3 3 3 0 3 5 9 24 31 43 54 60 72 81 78 96 133 114 124 110 66 80 71 81 61 43 31 32 12 9 11 8 4 3 6 5 5 1 2 0
ga ga 1962 53.6 43 1.3e-01 2.1 -0.31 8 0 2 0 1 4 5 3 5 5 9 11 22 24 36 58 70 72 84 120 100 138 137 185 154 120 102 98 88 83 52 42 28 31 22 11 11 10 3 6 4 2 3 0 1
at at 1744 51.7 43 1.7e-01 2.7 -0.44 9 0 1 1 3 3 2 1 3 5 7 20 23 23 46 54 66 68 59 100 94 141 147 142 143 86 78 73 73 62 69 39 41 24 16 10 3 4 3 2 3 2 2 2 0
ca ca 2378 51.4 43 1.8e-01 2.8 -0.45 10 0 1 3 2 5 3 1 7 8 13 14 30 35 57 73 102 96 104 108 170 210 220 197 177 106 112 96 108 77 68 44 54 19 11 12 5 4 3 6 6 5 1 5 0
ct ct 2330 51.2 43 1.8e-01 2.9 -0.46 11 0 1 1 5 4 7 9 9 8 14 19 32 49 51 80 73 120 121 125 131 195 223 205 161 127 94 86 74 67 62 62 31 23 19 11 9 5 4 4 6 1 2 0 0
tg tg 2412 41.1 43 5.5e-01 8.9 -0.95 12 0 1 2 7 4 3 9 4 13 13 17 30 34 54 67 76 98 108 113 149 228 226 254 182 124 104 89 68 82 67 45 45 31 26 8 11 6 2 6 3 1 1 1 0
ag ag 2517 39.1 43 6.4e-01 10 -1.01 13 0 3 1 0 4 5 3 9 10 15 16 20 31 47 75 96 91 117 132 140 189 218 229 185 161 121 114 122 96 67 51 37 39 20 14 10 8 4 6 4 3 3 1 0
gc gc 1884 32.7 43 8.7e-01 14 -1.15 14 0 0 1 3 3 3 6 5 9 8 14 14 24 29 49 70 79 85 90 127 177 189 197 151 104 81 66 55 55 47 39 39 21 17 9 5 2 3 1 4 2 1 0 0
cg cg 516 29.8 43 9.4e-01 15 -1.18 15 0 0 0 1 3 3 1 0 0 2 4 7 5 5 9 17 14 25 28 28 48 47 49 49 33 17 22 10 21 14 19 13 6 6 3 1 1 3 0 1 0 0 1 0
gt gt 1599 19.2 43 1.0e+00 16 -1.20 16 0 2 2 3 4 3 3 4 10 11 16 18 23 37 44 51 60 67 74 98 147 160 139 114 85 74 62 56 56 53 35 26 22 16 6 3 4 4 2 2 1 0 2 0 
 Host name	rsat
 Job started	2025-01-04.142227
 Job done	2025-01-04.142228
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