peak-motifs SMAD4

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=134.31; evalue=4.9e-135

amAAACCACAtmm

KKATGTGGTTTKT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 551 (19.08%)
Max nb of predicted sites per peak: 21
(chr19:33236712-33237811)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=105.19; evalue=6.5e-106

ascCAGACAGacrsr

YSYGTCTGTCTGGST

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 641 (22.20%)
Max nb of predicted sites per peak: 60
(chr17:79767015-79767658)
Mean nb of predicted sites per peak: 1.92

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=74.05; evalue=8.9e-75

wkwttgCTTTGATcTtt

AAAGATCAAAGCAAWMW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 454 (15.72%)
Max nb of predicted sites per peak: 14
(chr8:43096416-43097125)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=60.14; evalue=7.2e-61

gkgcTGAGTCAccsc

GSGGTGACTCAGCMC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 381 (13.19%)
Max nb of predicted sites per peak: 38
(chr8:579654-580419)
Mean nb of predicted sites per peak: 1.46

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=42.34; evalue=4.6e-43

rmAAGGTCAGrc

GYCTGACCTTKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 128 (4.43%)
Max nb of predicted sites per peak: 2
(chr21:37607493-37607668)
Mean nb of predicted sites per peak: 1.01

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=29.93; evalue=1.2e-30

ascCAGACAGac

GTCTGTCTGGST

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 593 (20.53%)
Max nb of predicted sites per peak: 39
(chr17:79767015-79767658)
Mean nb of predicted sites per peak: 1.66

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=10.98; evalue=1e-11

gyCyAGACAGav

BTCTGTCTRGRC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 540 (18.70%)
Max nb of predicted sites per peak: 10
(chr12:131613686-131614105)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=26.18; evalue=6.6e-27

kkcwGTCTGGvy

RBCCAGACWGMM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 691 (23.93%)
Max nb of predicted sites per peak: 13
(chr16:620989-621632)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=6.97; evalue=1.1e-07

mwaACCACAgmm

KKCTGTGGTTWK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 704 (24.38%)
Max nb of predicted sites per peak: 21
(chr19:33236712-33237811)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=29.93; evalue=1.2e-30

aggCAGACAGac

GTCTGTCTGCCT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 636 (22.02%)
Max nb of predicted sites per peak: 51
(chr17:79767015-79767658)
Mean nb of predicted sites per peak: 1.69

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m1

k-mer sig=67.48; evalue=3.3e-68

draTGAcTCAthm

KDATGAGTCATYH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 450 (15.58%)
Max nb of predicted sites per peak: 19
(chr8:579654-580419)
Mean nb of predicted sites per peak: 1.61

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m2

k-mer sig=46.14; evalue=7.2e-47

aaraAACCACAaaa

TTTTGTGGTTTYTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 542 (18.77%)
Max nb of predicted sites per peak: 20
(chr19:33236712-33237811)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m3

k-mer sig=36.04; evalue=9.1e-37

aaaAgATCAAAGgmh

DKCCTTTGATCTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 465 (16.10%)
Max nb of predicted sites per peak: 15
(chr8:43096416-43097125)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m4

k-mer sig=24.79; evalue=1.6e-25

wawGTAAACAaw

WTTGTTTACWTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 456 (15.79%)
Max nb of predicted sites per peak: 6
(chr6:1053843-1054170)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv4_m5

k-mer sig=24.00; evalue=1e-24

shAACCGCAGcsg

CSGCTGCGGTTDS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 380 (13.16%)
Max nb of predicted sites per peak: 8
(chr8:1094690-1095036)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=10.62; evalue=2.4e-11

cagCCAGACAGac

GTCTGTCTGGCTG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 653 (22.61%)
Max nb of predicted sites per peak: 41
(chr19:4172178-4172839)
Mean nb of predicted sites per peak: 1.61

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=5.11; evalue=7.8e-06

cwGTCTAGACwg

CWGTCTAGACWG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 291 (10.08%)
Max nb of predicted sites per peak: 4
(chr9:94909612-94909913)
Mean nb of predicted sites per peak: 2.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=10.62; evalue=2.4e-11

cagCCAGACAsac

GTSTGTCTGGCTG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 649 (22.47%)
Max nb of predicted sites per peak: 43
(chr19:4172178-4172839)
Mean nb of predicted sites per peak: 1.73

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=0.83; evalue=0.15

vaAACCACAGmm

KKCTGTGGTTTB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 566 (19.60%)
Max nb of predicted sites per peak: 20
(chr19:33236712-33237811)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=10.62; evalue=2.4e-11

mascCAGACAGac

GTCTGTCTGGSTK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 611 (21.16%)
Max nb of predicted sites per peak: 40
(chr17:79767015-79767658)
Mean nb of predicted sites per peak: 1.61

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: SMAD4 (05/01/2025 11:39)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results