/var/www/html/rsat/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_html	$RSAT/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
 Matrices
	file1	15 matrices	$RSAT/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	19	146
		file1	2	17	146
		file1	3	10	345
		file1	4	17	124
		file1	5	10	390
		file1	6	15	263
		file1	7	15	230
		file1	8	11	624
		file1	9	12	294
		file1	10	13	209
		file1	11	15	595
		...	5 more matrices
	file2	15 matrices	$RSAT/public_html/tmp/www-data/2025/01/13/peak-motifs.2025-01-13.043824_2025-01-13.043824_m2sY0P/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		19		146
		file2		2		17		146
		file2		3		10		345
		file2		4		17		124
		file2		5		10		390
		file2		6		15		263
		file2		7		15		230
		file2		8		11		624
		file2		9		12		294
		file2		10		13		209
		file2		11		15		595
		...	5 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_test_vs_ctrl_m1 dyads_test_vs_ctrl_m1 dyads_test_vs_ctrl_m1 dyads_test_vs_ctrl_m1 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
dyads_test_vs_ctrl_m3 dyads_test_vs_ctrl_m3 dyads_test_vs_ctrl_m3 dyads_test_vs_ctrl_m3 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 1.000 1.000 19 19 19 19 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
dyads_test_vs_ctrl_m4 dyads_test_vs_ctrl_m4 dyads_test_vs_ctrl_m4 dyads_test_vs_ctrl_m4 1.000 1.000 29 29 29 29 1.0000 1.0000 1.0000 D 0
dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m2 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
dyads_test_vs_ctrl_m5 dyads_test_vs_ctrl_m5 dyads_test_vs_ctrl_m5 dyads_test_vs_ctrl_m5 1.000 1.000 29 29 29 29 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 0.816 0.816 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 0.816 0.816 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m4 0.893 0.744 10 12 10 12 0.8333 1.0000 0.8333 R -1
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 0.893 0.744 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 0.767 0.677 15 17 15 17 0.8824 1.0000 0.8824 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 0.767 0.677 17 15 15 17 0.8824 0.8824 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 0.726 0.650 19 17 17 19 0.8947 0.8947 1.0000 D 2
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 0.726 0.650 17 19 17 19 0.8947 1.0000 0.8947 D -2
dyads_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 dyads_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 0.759 0.599 15 19 15 19 0.7895 1.0000 0.7895 D -3
oligos_6nt_test_vs_ctrl_m1 dyads_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 dyads_test_vs_ctrl_m1 0.759 0.599 19 15 15 19 0.7895 0.7895 1.0000 D 3
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 0.746 0.589 19 15 15 19 0.7895 0.7895 1.0000 D 2
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 0.746 0.589 15 19 15 19 0.7895 1.0000 0.7895 D -2
dyads_test_vs_ctrl_m1 dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m1 dyads_test_vs_ctrl_m2 0.737 0.553 15 20 15 20 0.7500 1.0000 0.7500 D 0
dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m1 dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m1 0.737 0.553 20 15 15 20 0.7500 0.7500 1.0000 D 0
dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m4 dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m4 0.770 0.531 20 29 20 29 0.6897 1.0000 0.6897 D 0
dyads_test_vs_ctrl_m4 dyads_test_vs_ctrl_m2 dyads_test_vs_ctrl_m4 dyads_test_vs_ctrl_m2 0.770 0.531 29 20 20 29 0.6897 0.6897 1.0000 D 0 
 Host name	rsat
 Job started	2025-01-13.043930
 Job done	2025-01-13.043938
 Seconds	0.51
	user	0.51
	system	0.25
	cuser	6.15
;	csystem	1.16