; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/01/17/oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/01/17/oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/01/17/oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/01/17/oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/01/17/oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 66 52 24 38 27 18 42 10 40 10 46 10 25 13 161 9 20 8 114 19 21 31 45 53 52
c 116 73 20 149 95 22 13 30 226 11 13 10 207 15 15 13 216 6 15 16 104 16 25 64 116
g 144 202 300 146 219 304 300 316 78 325 297 335 118 324 176 331 114 342 224 312 221 299 280 209 156
t 32 31 14 25 17 14 3 2 14 12 2 3 8 6 6 5 8 2 5 11 12 12 8 32 34
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m1_rc.png
;
a 46 63 31 28 21 19 11 89 14 10 10 73 9 10 40 15 35 53 67
c 105 167 89 18 231 331 20 13 15 379 23 4 6 350 211 35 81 185 97
g 198 117 254 348 137 41 362 295 365 6 354 320 381 31 123 335 264 122 184
t 51 53 26 6 11 9 7 3 6 5 13 3 4 9 26 15 20 40 52
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m2_rc.png
;
a 60 65 10 20 13 18 12 11 14 17 14 6 14 63 10 14 22 23 17 36 49 69 61
c 75 87 82 335 11 9 13 364 33 19 12 196 125 105 64 175 57 121 134 267 163 88 116
g 252 246 338 69 402 406 403 50 380 391 405 231 291 235 350 239 347 280 266 105 187 223 201
t 48 37 5 11 9 2 7 10 8 8 4 2 5 32 11 7 9 11 18 27 36 55 57
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m3_rc.png
;
a 901 785 437 152 145 167 55 107 143 118 914 1069
c 1631 2288 3722 379 5475 159 243 5489 2338 3655 2132 1495
g 1947 1387 507 5023 128 171 5387 141 170 1895 1419 1446
t 1379 1398 1192 304 110 5361 173 121 3207 190 1393 1848
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m4_rc.png
;
a 781 618 124 55 102 155 162 88 149 214 797 763
c 1261 1333 3629 1966 3813 284 171 3855 345 3549 1399 1204
g 1039 997 250 66 168 3569 165 136 3444 172 989 1188
t 1115 1248 193 2109 113 188 3698 117 258 261 1011 1041
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m5_rc.png
;
a 198 172 0 0 0 0 0 0 183 183
c 340 357 1028 1028 0 1028 0 1028 335 324
g 309 262 0 0 1028 0 1028 0 254 315
t 181 237 0 0 0 0 0 0 256 206
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m6_rc.png
;
a 429 322 0 0 875 0 0 0 0 524 487
c 1051 1147 3025 3025 1261 0 1851 3025 3025 1042 1018
g 934 844 0 0 0 3025 0 0 0 812 882
t 611 712 0 0 889 0 1174 0 0 647 638
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/17//oligo-analysis_2025-01-17.083917_46LCWO_pssm_count_matrices_logo_m7_rc.png
;
; Host name rsat
; Job started 2025-01-17.083949
; Job done 2025-01-17.083952
; Seconds 0.41
; user 0.42
; system 0.08
; cuser 2.39
; csystem 0.34