; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2025/01/17/peak-motifs.2025-01-17.065355_2025-01-17.065355_fLm9Z5/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2025/01/17/peak-motifs.2025-01-17.065355_2025-01-17.065355_fLm9Z5/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2025/01/17/peak-motifs.2025-01-17.065355_2025-01-17.065355_fLm9Z5/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2025/01/17/peak-motifs.2025-01-17.065355_2025-01-17.065355_fLm9Z5/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	100
;

; assembly # 1	seed: cttatc	6 assembled patterns	length 11
;    alignt	    rev_cpl	score
cttatc.....	.....gataag	87.40
.ttatct....	....agataa.	62.90
..tatctc...	...gagata..	40.18
...atctct..	..agagat...	9.59
....tctctg.	.cagaga....	5.37
.....ctctga	tcagag.....	7.30
cttatctctga	tcagagataag	87.40	best consensus

; assembly # 2	seed: ctgata	4 assembled patterns	length 9
;  alignt	  rev_cpl	score
cctgat...	...atcagg	9.37
.ctgata..	..tatcag.	39.99
..tgataa.	.ttatca..	24.53
...gataag	cttatc...	87.40
cctgataag	cttatcagg	87.40	best consensus

; assembly # 3	seed: gtgaca	7 assembled patterns	length 12
;     alignt	     rev_cpl	score
ctgggt......	......acccag	4.23
.tgggtg.....	.....caccca.	12.96
..gggtga....	....tcaccc..	5.80
...ggtgac...	...gtcacc...	29.36
....gtgaca..	..tgtcac....	35.83
.....tgacag.	.ctgtca.....	22.24
......gacagt	actgtc......	22.10
ctgggtgacagt	actgtcacccag	35.83	best consensus

; assembly # 4	seed: agatag	6 assembled patterns	length 11
;    alignt	    rev_cpl	score
tcagag.....	.....ctctga	7.30
.cagaga....	....tctctg.	5.37
..agagat...	...atctct..	9.59
...gagata..	..tatctc...	40.18
....agatag.	.ctatct....	29.25
.....gatagg	cctatc.....	19.39
tcagagatagg	cctatctctga	40.18	best consensus

; assembly # 5	seed: ctgtcc	12 assembled patterns	length 17
;          alignt	          rev_cpl	score
actgtc...........	...........gacagt	22.10
.ctgtcc..........	..........ggacag.	25.87
..tgtcct.........	.........aggaca..	6.70
...gtcctg........	........caggac...	12.13
....tcctgt.......	.......acagga....	3.98
.....cctgtc......	......gacagg.....	11.96
......ctgtca.....	.....tgacag......	22.24
.......tgtcac....	....gtgaca.......	35.83
........gtcacc...	...ggtgac........	29.36
.........tcaccc..	..gggtga.........	5.80
..........caccca.	.tgggtg..........	12.96
...........acccag	ctgggt...........	4.23
actgtcctgtcacccag	ctgggtgacaggacagt	35.83	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 76.
; Host name	rsat
; Job started	2025-01-17.065427
; Job done	2025-01-17.065430
; Seconds	3.2
;	user	3.2
;	system	0.02
;	cuser	0
;	csystem	0
