; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2025/01/17/peak-motifs.2025-01-17.065355_2025-01-17.065355_fLm9Z5/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2025/01/17/peak-motifs.2025-01-17.065355_2025-01-17.065355_fLm9Z5/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2025/01/17/peak-motifs.2025-01-17.065355_2025-01-17.065355_fLm9Z5/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2025/01/17/peak-motifs.2025-01-17.065355_2025-01-17.065355_fLm9Z5/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	100
;

; assembly # 1	seed: agataag	4 assembled patterns	length 10
;   alignt	   rev_cpl	score
agagata...	...tatctct	21.78
.gagataa..	..ttatctc.	30.18
..agataag.	.cttatct..	65.50
...gataagg	ccttatc...	47.72
agagataagg	ccttatctct	65.50	best consensus

; assembly # 2	seed: cttatca	4 assembled patterns	length 10
;   alignt	   rev_cpl	score
ccttatc...	...gataagg	47.72
.cttatca..	..tgataag.	31.47
..ttatcag.	.ctgataa..	31.33
...tatcagt	actgata...	13.49
ccttatcagt	actgataagg	47.72	best consensus

; assembly # 3	seed: ctgtcac	5 assembled patterns	length 11
;    alignt	    rev_cpl	score
aactgtc....	....gacagtt	6.36
.actgtca...	...tgacagt.	8.91
..ctgtcac..	..gtgacag..	27.78
...tgtcacc.	.ggtgaca...	18.34
....gtcacca	tggtgac....	12.48
aactgtcacca	tggtgacagtt	27.78	best consensus

; assembly # 4	seed: cagataa	8 assembled patterns	length 14
;       alignt	       rev_cpl	score
agggaca.......	.......tgtccct	5.75
.gggacag......	......ctgtccc.	12.00
..ggacaga.....	.....tctgtcc..	9.11
...gacagat....	....atctgtc...	4.28
....acagata...	...tatctgt....	6.64
.....cagataa..	..ttatctg.....	23.43
......agataag.	.cttatct......	65.50
.......gataagg	ccttatc.......	47.72
agggacagataagg	ccttatctgtccct	65.50	best consensus

; assembly # 5	seed: gataaga	4 assembled patterns	length 10
;   alignt	   rev_cpl	score
agagata...	...tatctct	21.78
.gagataa..	..ttatctc.	30.18
..agataag.	.cttatct..	65.50
...gataaga	tcttatc...	20.91
agagataaga	tcttatctct	65.50	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 80.
; Host name	rsat
; Job started	2025-01-17.065436
; Job done	2025-01-17.065438
; Seconds	2.15
;	user	2.15
;	system	0
;	cuser	0
;	csystem	0
