/var/www/html/rsat/public_html/tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title cficifolia -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	1007
	Sum of sequence lengths      	918450
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	912
	Possible positions           	917443
 Oligonucleotide statistics:
	Total occurrences    	440924
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	917443
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	855	17050
	2	-24	[-479,-460]	-469.5	856	17106
	3	-23	[-459,-440]	-449.5	861	17173
	4	-22	[-439,-420]	-429.5	868	17299
	5	-21	[-419,-400]	-409.5	874	17428
	6	-20	[-399,-380]	-389.5	878	17535
	7	-19	[-379,-360]	-369.5	879	17570
	8	-18	[-359,-340]	-349.5	892	17717
	9	-17	[-339,-320]	-329.5	895	17874
	10	-16	[-319,-300]	-309.5	903	17996
	11	-15	[-299,-280]	-289.5	908	18115
	12	-14	[-279,-260]	-269.5	913	18243
	13	-13	[-259,-240]	-249.5	914	18270
	14	-12	[-239,-220]	-229.5	917	18311
	15	-11	[-219,-200]	-209.5	923	18428
	16	-10	[-199,-180]	-189.5	927	18502
	17	-9	[-179,-160]	-169.5	934	18612
	18	-8	[-159,-140]	-149.5	953	18854
	19	-7	[-139,-120]	-129.5	955	19085
	20	-6	[-119,-100]	-109.5	960	19155
	21	-5	[-99,-80]	-89.5	969	19273
	22	-4	[-79,-60]	-69.5	981	19524
	23	-3	[-59,-40]	-49.5	1007	19898
	24	-2	[-39,-20]	-29.5	1007	20140
	25	-1	[-19,0]	-9.5	1007	20140
	26	0	[1,20]	10.5	1007	20140
	27	1	[21,40]	30.5	1007	20140
	28	2	[41,60]	50.5	1007	19849
	29	3	[61,80]	70.5	980	19503
	30	4	[81,100]	90.5	969	19254
	31	5	[101,120]	110.5	960	19145
	32	6	[121,140]	130.5	955	19081
	33	7	[141,160]	150.5	953	18817
	34	8	[161,180]	170.5	934	18599
	35	9	[181,200]	190.5	927	18494
	36	10	[201,220]	210.5	923	18420
	37	11	[221,240]	230.5	917	18306
	38	12	[241,260]	250.5	914	18268
	39	13	[261,280]	270.5	913	18232
	40	14	[281,300]	290.5	908	18105
	41	15	[301,320]	310.5	902	17981
	42	16	[321,340]	330.5	894	17869
	43	17	[341,360]	350.5	892	17689
	44	18	[361,380]	370.5	879	17566
	45	19	[381,400]	390.5	877	17527
	46	20	[401,420]	410.5	874	17416
	47	21	[421,440]	430.5	868	17286
	48	22	[441,460]	450.5	861	17161
	49	23	[461,480]	470.5	856	17105
	50	24	[481,500]	490.5	855	16192

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 49993 132.3 49 1.4e-09 2.2e-08 7.65 1 1102 949 982 919 980 998 954 1004 1029 975 991 1006 999 973 964 1075 1050 1054 1124 1045 1070 1036 1046 1068 1079 1103 1076 1024 1027 1039 979 997 939 904 983 949 978 963 935 976 1014 999 924 907 907 963 935 1015 1032 953
tt tt 47856 103.9 49 7.9e-06 0.00013 3.90 2 968 925 927 944 888 892 861 857 914 954 951 969 968 947 954 938 944 909 942 928 995 1065 1061 1125 1151 1047 1048 1046 1008 990 1026 958 998 963 950 981 892 889 903 902 934 990 869 940 925 946 884 875 937 978
tc tc 28231 94.4 49 1.0e-04 0.0017 2.77 3 658 549 516 538 539 499 514 531 519 555 548 560 506 570 602 540 547 533 569 570 570 649 620 650 653 621 617 610 661 604 605 655 589 561 542 569 515 546 557 534 559 558 529 536 532 527 543 502 511 543
ct ct 26295 79.2 49 4.0e-03 0.065 1.19 4 577 519 482 511 489 454 463 506 528 498 524 527 518 478 552 523 541 530 519 527 542 590 604 613 604 584 559 615 573 543 557 584 533 536 497 536 487 512 482 483 471 501 522 472 499 499 515 491 491 534
tg tg 27989 78.2 49 5.1e-03 0.081 1.09 5 594 574 540 554 537 553 535 521 521 532 503 548 583 613 536 580 597 599 552 572 583 611 600 578 590 633 623 585 572 567 564 575 596 589 568 575 532 523 529 547 474 540 542 546 529 571 502 516 515 570
gc gc 14387 71.0 49 2.2e-02 0.35 0.46 6 304 286 251 297 255 268 280 285 290 268 267 258 302 272 284 278 288 332 325 317 307 314 354 322 283 315 324 307 334 271 291 316 299 313 290 290 275 290 260 271 256 263 246 240 279 273 264 284 248 301
cg cg 10599 70.9 49 2.2e-02 0.35 0.45 7 235 191 186 204 199 187 197 222 198 196 197 199 213 224 219 227 205 233 243 217 266 245 243 231 235 211 237 221 245 233 196 223 219 214 217 219 211 214 188 208 242 196 172 165 200 189 204 176 170 217
ga ga 29885 68.6 49 3.4e-02 0.54 0.27 8 621 577 568 553 593 578 530 593 548 588 542 591 588 630 593 590 660 631 667 638 621 646 628 643 618 646 669 637 602 621 615 582 570 595 595 560 573 592 575 591 603 572 574 547 578 581 574 590 588 620
at at 38649 68.5 49 3.4e-02 0.55 0.26 9 822 767 717 775 763 769 722 749 742 764 742 742 769 811 788 737 785 805 767 800 776 806 773 828 850 878 850 789 835 824 813 809 767 737 758 734 726 741 762 760 766 775 729 756 742 727 760 731 742 769
ag ag 27887 65.4 49 5.8e-02 0.93 0.03 10 571 550 547 504 525 516 517 534 551 545 523 530 540 536 541 556 583 638 627 620 569 605 641 630 574 621 612 640 585 559 601 565 546 563 521 499 547 542 559 539 548 532 516 514 515 514 516 569 545 546
cc cc 17436 63.2 49 8.3e-02 1.3 -0.13 11 370 306 349 331 316 347 340 331 299 321 351 324 335 348 400 344 377 335 345 377 357 354 399 388 391 369 394 403 378 376 371 363 372 360 341 391 374 328 351 330 330 293 299 345 321 318 361 311 305 317
ta ta 30934 62.4 49 9.5e-02 1.5 -0.18 12 627 616 588 614 597 562 602 603 631 594 630 591 644 572 625 628 626 692 606 649 633 656 648 689 713 692 663 720 650 631 673 629 598 585 579 582 589 596 600 595 615 599 606 584 567 551 623 570 596 605
gg gg 18203 61.8 49 1.0e-01 1.7 -0.22 13 390 337 327 342 359 367 340 350 365 345 354 360 402 363 317 373 354 382 383 354 381 423 428 395 386 405 423 402 420 361 350 355 364 374 383 381 349 354 359 362 361 335 370 294 318 325 351 330 344 356
ca ca 28058 60.4 49 1.3e-01 2 -0.31 14 611 539 535 543 530 526 539 504 527 548 550 522 516 565 576 565 558 587 634 604 565 564 656 624 603 615 647 590 613 621 609 612 571 555 576 515 553 537 577 564 530 532 533 505 528 490 506 544 531 513
ac ac 22352 59.3 49 1.5e-01 2.4 -0.38 15 471 405 447 411 434 394 411 420 423 430 446 450 426 417 450 494 483 479 496 468 486 465 510 505 494 476 513 503 459 494 481 448 428 443 462 399 461 435 428 448 439 410 442 374 407 397 405 422 431 432
gt gt 22170 58.7 49 1.6e-01 2.6 -0.41 16 473 464 453 406 407 416 443 401 419 430 400 439 438 471 432 475 460 472 448 462 485 506 502 483 488 488 494 497 467 467 443 471 495 460 428 444 419 402 434 430 411 440 413 429 389 412 390 371 402 401 
 Host name	rsat
 Job started	2025-01-20.102326
 Job done	2025-01-20.102331
 Seconds	4.79
	user	4.79
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