One-to-n alignments
Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m1_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv3_m1_shift0 (oligos_6nt_mkv3_m1) |
 |
|
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; oligos_6nt_mkv3_m1; m=0 (reference); ncol1=15; shift=0; ncol=15; kmwcCTGAACcTaww
; Alignment reference
a 293 389 629 245 97 42 54 1106 1051 17 134 166 731 317 314
c 276 446 110 813 1011 46 25 77 46 1148 828 69 127 305 203
g 323 148 85 82 51 121 1107 10 18 31 135 155 201 188 249
t 329 238 397 81 62 1012 35 28 106 25 124 831 162 411 455
|
| oligos_6nt_mkv3_m1_shift0 (oligos_6nt_mkv3_m1) |
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; oligos_6nt_mkv3_m1 versus oligos_6nt_mkv3_m1; m=1/2; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; kmwcCTGAACcTaww
; cor=; Ncor=
a 293 389 629 245 97 42 54 1106 1051 17 134 166 731 317 314
c 276 446 110 813 1011 46 25 77 46 1148 828 69 127 305 203
g 323 148 85 82 51 121 1107 10 18 31 135 155 201 188 249
t 329 238 397 81 62 1012 35 28 106 25 124 831 162 411 455
|
| oligos_7nt_mkv4_m2_shift1 (oligos_7nt_mkv4_m2) |
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; oligos_6nt_mkv3_m1 versus oligos_7nt_mkv4_m2; m=2/2; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.908639; -mwCCTGAACCtaww
; cor=; Ncor=
a 0 332 301 129 54 39 50 949 933 26 31 174 423 326 319
c 0 415 164 846 929 40 50 25 22 957 871 126 136 176 156
g 0 83 107 20 12 116 903 8 17 23 56 131 252 127 195
t 0 199 457 34 34 834 26 47 57 23 71 598 218 400 359
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv4_m3_shift0 (oligos_7nt_mkv4_m3) |
 |
|
|
; oligos_7nt_mkv4_m3; m=0 (reference); ncol1=12; shift=0; ncol=12; wdwGCGAAGCwd
; Alignment reference
a 383 389 545 92 116 69 1295 1316 43 100 431 405
c 261 164 175 82 1085 97 18 21 35 1078 297 278
g 312 455 283 1142 39 1168 7 9 1265 100 157 346
t 416 364 369 56 132 38 52 26 29 94 487 343
|
| oligos_7nt_mkv4_m3_shift0 (oligos_7nt_mkv4_m3) |
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; oligos_7nt_mkv4_m3 versus oligos_7nt_mkv4_m3; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; wdwGCGAAGCwd
; cor=; Ncor=
a 383 389 545 92 116 69 1295 1316 43 100 431 405
c 261 164 175 82 1085 97 18 21 35 1078 297 278
g 312 455 283 1142 39 1168 7 9 1265 100 157 346
t 416 364 369 56 132 38 52 26 29 94 487 343
|
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m5_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv3_m5_shift0 (oligos_6nt_mkv3_m5) |
 |
|
|
; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=13; shift=0; ncol=13; waaATGAATGArw
; Alignment reference
a 638 664 704 1575 113 72 1684 1751 121 116 1695 724 584
c 326 297 260 72 16 56 56 18 24 157 29 165 327
g 340 449 435 90 55 1616 64 37 41 1456 52 545 423
t 546 440 451 113 1666 106 46 44 1664 121 74 416 516
|
| oligos_6nt_mkv3_m5_shift0 (oligos_6nt_mkv3_m5) |
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|
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; oligos_6nt_mkv3_m5 versus oligos_6nt_mkv3_m5; m=1/1; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; waaATGAATGArw
; cor=; Ncor=
a 638 664 704 1575 113 72 1684 1751 121 116 1695 724 584
c 326 297 260 72 16 56 56 18 24 157 29 165 327
g 340 449 435 90 55 1616 64 37 41 1456 52 545 423
t 546 440 451 113 1666 106 46 44 1664 121 74 416 516
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m2_shift1 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv4_m2_shift1 (oligos_7nt_mkv4_m2) |
|
|
|
; oligos_7nt_mkv4_m2; m=0 (reference); ncol1=14; shift=1; ncol=15; -mwCCTGAACCtaww
; Alignment reference
a 0 332 301 129 54 39 50 949 933 26 31 174 423 326 319
c 0 415 164 846 929 40 50 25 22 957 871 126 136 176 156
g 0 83 107 20 12 116 903 8 17 23 56 131 252 127 195
t 0 199 457 34 34 834 26 47 57 23 71 598 218 400 359
|
| oligos_7nt_mkv4_m2_shift1 (oligos_7nt_mkv4_m2) |
|
|
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; oligos_7nt_mkv4_m2 versus oligos_7nt_mkv4_m2; m=1/2; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -mwCCTGAACCtaww
; cor=; Ncor=
a 0 332 301 129 54 39 50 949 933 26 31 174 423 326 319
c 0 415 164 846 929 40 50 25 22 957 871 126 136 176 156
g 0 83 107 20 12 116 903 8 17 23 56 131 252 127 195
t 0 199 457 34 34 834 26 47 57 23 71 598 218 400 359
|
| oligos_6nt_mkv3_m1_shift0 (oligos_6nt_mkv3_m1) |
|
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; oligos_7nt_mkv4_m2 versus oligos_6nt_mkv3_m1; m=2/2; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.908639; kmwcCTGAACcTaww
; cor=; Ncor=
a 293 389 629 245 97 42 54 1106 1051 17 134 166 731 317 314
c 276 446 110 813 1011 46 25 77 46 1148 828 69 127 305 203
g 323 148 85 82 51 121 1107 10 18 31 135 155 201 188 249
t 329 238 397 81 62 1012 35 28 106 25 124 831 162 411 455
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m4_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv4_m4_shift0 (oligos_7nt_mkv4_m4) |
 |
|
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; oligos_7nt_mkv4_m4; m=0 (reference); ncol1=12; shift=0; ncol=12; wwGCTTTACCww
; Alignment reference
a 245 219 33 28 55 29 25 684 14 57 234 240
c 195 110 46 737 9 19 13 53 744 662 128 138
g 155 178 675 10 8 36 34 27 23 46 160 108
t 206 294 47 26 729 717 729 37 20 36 279 315
|
| oligos_7nt_mkv4_m4_shift0 (oligos_7nt_mkv4_m4) |
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; oligos_7nt_mkv4_m4 versus oligos_7nt_mkv4_m4; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; wwGCTTTACCww
; cor=; Ncor=
a 245 219 33 28 55 29 25 684 14 57 234 240
c 195 110 46 737 9 19 13 53 744 662 128 138
g 155 178 675 10 8 36 34 27 23 46 160 108
t 206 294 47 26 729 717 729 37 20 36 279 315
|
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m4_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv3_m4_shift0 (oligos_6nt_mkv3_m4) |
 |
|
|
; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=11; shift=0; ncol=11; kwACTGTAAav
; Alignment reference
a 325 388 1085 24 100 119 13 1183 1194 530 342
c 260 253 118 1302 49 6 30 52 32 260 406
g 421 254 63 16 46 1235 7 82 105 254 370
t 360 471 100 24 1171 6 1316 49 35 322 248
|
| oligos_6nt_mkv3_m4_shift0 (oligos_6nt_mkv3_m4) |
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; oligos_6nt_mkv3_m4 versus oligos_6nt_mkv3_m4; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; kwACTGTAAav
; cor=; Ncor=
a 325 388 1085 24 100 119 13 1183 1194 530 342
c 260 253 118 1302 49 6 30 52 32 260 406
g 421 254 63 16 46 1235 7 82 105 254 370
t 360 471 100 24 1171 6 1316 49 35 322 248
|
| oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1) |
 |
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; oligos_6nt_mkv3_m4 versus oligos_7nt_mkv4_m1; m=2/2; ncol2=14; w=0; offset=0; strand=D; shift=0; score=0.746566; daACTGTAAAc
; cor=; Ncor=
a 201 311 703 57 63 48 28 711 710 630 108
c 120 177 33 688 22 13 39 42 29 79 462
g 238 134 11 14 41 698 18 12 20 38 161
t 223 160 35 23 656 23 697 17 23 35 51
|
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv3_m2_shift0 (oligos_6nt_mkv3_m2) |
 |
|
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; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=14; shift=0; ncol=14; wagGAAAGAAAraa
; Alignment reference
a 593 538 315 90 1254 1344 1339 36 1315 1336 1297 409 535 524
c 220 250 121 28 47 21 26 35 39 26 22 114 242 322
g 247 346 741 1228 96 54 52 1343 50 49 93 771 347 257
t 398 324 281 112 61 39 41 44 54 47 46 164 334 355
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| oligos_6nt_mkv3_m2_shift0 (oligos_6nt_mkv3_m2) |
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; oligos_6nt_mkv3_m2 versus oligos_6nt_mkv3_m2; m=1/1; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; wagGAAAGAAAraa
; cor=; Ncor=
a 593 538 315 90 1254 1344 1339 36 1315 1336 1297 409 535 524
c 220 250 121 28 47 21 26 35 39 26 22 114 242 322
g 247 346 741 1228 96 54 52 1343 50 49 93 771 347 257
t 398 324 281 112 61 39 41 44 54 47 46 164 334 355
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m5_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv4_m5_shift0 (oligos_7nt_mkv4_m5) |
 |
|
|
; oligos_7nt_mkv4_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; wwAATAAATAww
; Alignment reference
a 756 713 1878 1975 91 1871 1923 1938 134 1968 666 845
c 383 439 63 32 133 101 48 43 51 36 277 268
g 260 371 49 49 91 88 37 82 50 63 365 428
t 752 628 161 95 1836 91 143 88 1916 84 843 610
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| oligos_7nt_mkv4_m5_shift0 (oligos_7nt_mkv4_m5) |
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; oligos_7nt_mkv4_m5 versus oligos_7nt_mkv4_m5; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; wwAATAAATAww
; cor=; Ncor=
a 756 713 1878 1975 91 1871 1923 1938 134 1968 666 845
c 383 439 63 32 133 101 48 43 51 36 277 268
g 260 371 49 49 91 88 37 82 50 63 365 428
t 752 628 161 95 1836 91 143 88 1916 84 843 610
|
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3) |
 |
|
|
; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=12; shift=0; ncol=12; wagGATTGAatw
; Alignment reference
a 465 451 227 18 1296 59 25 17 1310 851 320 417
c 248 296 108 27 26 21 41 9 9 94 344 224
g 272 296 739 1320 28 85 25 1339 31 242 320 288
t 398 340 309 18 33 1218 1292 18 33 196 399 454
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| oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3) |
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; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m3; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; wagGATTGAatw
; cor=; Ncor=
a 465 451 227 18 1296 59 25 17 1310 851 320 417
c 248 296 108 27 26 21 41 9 9 94 344 224
g 272 296 739 1320 28 85 25 1339 31 242 320 288
t 398 340 309 18 33 1218 1292 18 33 196 399 454
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m1_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1) |
|
|
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; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=14; shift=0; ncol=14; daACTGTAAActmd
; Alignment reference
a 201 311 703 57 63 48 28 711 710 630 108 123 292 229
c 120 177 33 688 22 13 39 42 29 79 462 37 204 104
g 238 134 11 14 41 698 18 12 20 38 161 98 115 209
t 223 160 35 23 656 23 697 17 23 35 51 524 171 240
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| oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1) |
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; oligos_7nt_mkv4_m1 versus oligos_7nt_mkv4_m1; m=1/2; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; daACTGTAAActmd
; cor=; Ncor=
a 201 311 703 57 63 48 28 711 710 630 108 123 292 229
c 120 177 33 688 22 13 39 42 29 79 462 37 204 104
g 238 134 11 14 41 698 18 12 20 38 161 98 115 209
t 223 160 35 23 656 23 697 17 23 35 51 524 171 240
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| oligos_6nt_mkv3_m4_shift0 (oligos_6nt_mkv3_m4) |
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; oligos_7nt_mkv4_m1 versus oligos_6nt_mkv3_m4; m=2/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.746566; kwACTGTAAav---
; cor=; Ncor=
a 325 388 1085 24 100 119 13 1183 1194 530 342 0 0 0
c 260 253 118 1302 49 6 30 52 32 260 406 0 0 0
g 421 254 63 16 46 1235 7 82 105 254 370 0 0 0
t 360 471 100 24 1171 6 1316 49 35 322 248 0 0 0
|