RSAT - peak-motifs result

Analysis: cficifolia (20/01/2025 10:24)

peak-motifs  -v 1 -title cficifolia -i $RSAT/public_html/tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: acctgaaccta (sig=12.16; e-value=6.9e-13) RC: taggttcaggt oligos_6nt_mkv3_m2 assembly: ggaaagaaag (sig=10.54; e-value=2.9e-11) RC: ctttctttcc oligos_6nt_mkv3_m3 assembly: ggattgaa (sig=10.51; e-value=3.1e-11) RC: ttcaatcc oligos_6nt_mkv3_m4 assembly: actgtaa (sig=8.30; e-value=5e-09) RC: ttacagt oligos_6nt_mkv3_m5 assembly: aatgaatga (sig=6.95; e-value=1.1e-07) RC: tcattcatt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: actgtaaact (sig=14.02; e-value=9.5e-15) RC: agtttacagt oligos_7nt_mkv4_m2 assembly: cctgaaccta (sig=12.97; e-value=1.1e-13) RC: taggttcagg oligos_7nt_mkv4_m3 assembly: agcgaagc (sig=7.78; e-value=1.7e-08) RC: gcttcgct oligos_7nt_mkv4_m4 assembly: gctttacc (sig=7.66; e-value=2.2e-08) RC: ggtaaagc oligos_7nt_mkv4_m5 assembly: aataaata (sig=7.19; e-value=6.5e-08) RC: tatttatt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=12.16; evalue=6.9e-13 smwCCtGAACCtayk MRTAGGTTCAGGWKS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 251 (24.93%) Max nb of predicted sites per peak: 14  (cficifolia_CM066977_12092969..12094714_DNA_DTC) Mean nb of predicted sites per peak: 2.32	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=10.54; evalue=2.9e-11 argGAAAGAAAGrm KYCTTTCTTTCCYT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 257 (25.52%) Max nb of predicted sites per peak: 6  (cficifolia_CM066977_6220845..6221666_DNA_DTC) Mean nb of predicted sites per peak: 1.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=10.51; evalue=3.1e-11 rvGGATTGAask MSTTCAATCCBY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 205 (20.36%) Max nb of predicted sites per peak: 5  (cficifolia_CM066977_4863558..4868032_DNA_DTM) Mean nb of predicted sites per peak: 1.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=8.30; evalue=5e-09 staCTGTAAms SKTTACAGTAS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 148 (14.70%) Max nb of predicted sites per peak: 6  (cficifolia_CM066977_4863558..4868032_DNA_DTM) Mean nb of predicted sites per peak: 2.01	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=6.95; evalue=1.1e-07 arraTGAATGArr YYTCATTCATYYT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 113 (11.22%) Max nb of predicted sites per peak: 4  (cficifolia_CM066977_5178061..5179497_DNA_DTM) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=14.02; evalue=9.5e-15 gmACTGTAAaStmk MKASTTTACAGTKC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 215 (21.35%) Max nb of predicted sites per peak: 7  (cficifolia_CM066977_11723592..11727794_DNA_DTC) Mean nb of predicted sites per peak: 1.78	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=12.97; evalue=1.1e-13 mtCCtGAACCtrwt AWYAGGTTCAGGAK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 205 (20.36%) Max nb of predicted sites per peak: 15  (cficifolia_CM066977_12092969..12094714_DNA_DTC) Mean nb of predicted sites per peak: 2.69	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=7.78; evalue=1.7e-08 sgrGCGAAGChs SDGCTTCGCYCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 192 (19.07%) Max nb of predicted sites per peak: 6  (cficifolia_CM066966_5244595..5246069_DNA_DTM) Mean nb of predicted sites per peak: 1.58	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=7.66; evalue=2.2e-08 skGCTTTACCkt AMGGTAAAGCMS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 255 (25.32%) Max nb of predicted sites per peak: 9  (cficifolia_CM066977_6797058..6799627_DNA_DTC) Mean nb of predicted sites per peak: 1.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv4_m5	k-mer sig=7.19; evalue=6.5e-08 wmAATAAATAtr YATATTTATTKW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 223 (22.14%) Max nb of predicted sites per peak: 8  (cficifolia_CM066968_6165842_6175185_Class_I_LTR_Ty1_copia_SIRE) Mean nb of predicted sites per peak: 1.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title cficifolia -i $RSAT/public_html/tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d

Warning: Not a single pattern was found in file tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/01/20/peak-motifs.2025-01-20.102316_2025-01-20.102316_0UnV3d/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab