position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/01/26/peak-motifs.2025-01-26.121421_2025-01-26.121421_ErUTZZ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title CanDef43 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/01/26/peak-motifs.2025-01-26.121421_2025-01-26.121421_ErUTZZ/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/01/26/peak-motifs.2025-01-26.121421_2025-01-26.121421_ErUTZZ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/01/26/peak-motifs.2025-01-26.121421_2025-01-26.121421_ErUTZZ/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 1 Sum of sequence lengths 454 Min sequence length 0 Max sequence length 454 Average sequence length 454 Possible positions 454 Sequences: # length ID 1 454 CanDef43 Oligonucleotide statistics: Total occurrences 454 Position interval parameters: Position interval 20 Number of windows 24 Total positions 454 Degrees of freedom 23 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -12 [-239,-220] -229.5 1 8 2 -11 [-219,-200] -209.5 1 20 3 -10 [-199,-180] -189.5 1 20 4 -9 [-179,-160] -169.5 1 20 5 -8 [-159,-140] -149.5 1 20 6 -7 [-139,-120] -129.5 1 20 7 -6 [-119,-100] -109.5 1 20 8 -5 [-99,-80] -89.5 1 20 9 -4 [-79,-60] -69.5 1 20 10 -3 [-59,-40] -49.5 1 20 11 -2 [-39,-20] -29.5 1 20 12 -1 [-19,0] -9.5 1 20 13 0 [1,20] 10.5 1 20 14 1 [21,40] 30.5 1 20 15 2 [41,60] 50.5 1 20 16 3 [61,80] 70.5 1 20 17 4 [81,100] 90.5 1 20 18 5 [101,120] 110.5 1 20 19 6 [121,140] 130.5 1 20 20 7 [141,160] 150.5 1 20 21 8 [161,180] 170.5 1 20 22 9 [181,200] 190.5 1 20 23 10 [201,220] 210.5 1 20 24 11 [221,240] 230.5 1 6 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -229.5 occurrences in window 1 [-239,-220] 11 -209.5 occurrences in window 2 [-219,-200] 12 -189.5 occurrences in window 3 [-199,-180] 13 -169.5 occurrences in window 4 [-179,-160] 14 -149.5 occurrences in window 5 [-159,-140] 15 -129.5 occurrences in window 6 [-139,-120] 16 -109.5 occurrences in window 7 [-119,-100] 17 -89.5 occurrences in window 8 [-99,-80] 18 -69.5 occurrences in window 9 [-79,-60] 19 -49.5 occurrences in window 10 [-59,-40] 20 -29.5 occurrences in window 11 [-39,-20] 21 -9.5 occurrences in window 12 [-19,0] 22 10.5 occurrences in window 13 [1,20] 23 30.5 occurrences in window 14 [21,40] 24 50.5 occurrences in window 15 [41,60] 25 70.5 occurrences in window 16 [61,80] 26 90.5 occurrences in window 17 [81,100] 27 110.5 occurrences in window 18 [101,120] 28 130.5 occurrences in window 19 [121,140] 29 150.5 occurrences in window 20 [141,160] 30 170.5 occurrences in window 21 [161,180] 31 190.5 occurrences in window 22 [181,200] 32 210.5 occurrences in window 23 [201,220] 33 230.5 occurrences in window 24 [221,240]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 154 | 19.1 | 23 | 7.0e-01 | 2.8 | -0.44 | 1 | 0 | 5 | 9 | 6 | 10 | 4 | 11 | 11 | 13 | 7 | 6 | 6 | 8 | 4 | 6 | 6 | 8 | 6 | 7 | 5 | 5 | 4 | 6 | 1 |
| t | t | 178 | 16.7 | 23 | 8.2e-01 | 3.3 | -0.52 | 2 | 6 | 11 | 6 | 11 | 4 | 8 | 5 | 2 | 4 | 8 | 8 | 11 | 6 | 9 | 9 | 8 | 8 | 8 | 6 | 9 | 11 | 10 | 7 | 3 |
| c | c | 58 | 0.0 | 23 | 1.0e+00 | 4 | -0.60 | 3 | 0 | 4 | 3 | 2 | 2 | 3 | 2 | 5 | 1 | 1 | 3 | 3 | 4 | 4 | 3 | 2 | 2 | 2 | 1 | 3 | 1 | 4 | 3 | 0 |
| g | g | 64 | 0.0 | 23 | 1.0e+00 | 4 | -0.60 | 4 | 2 | 0 | 2 | 1 | 4 | 5 | 2 | 2 | 2 | 4 | 3 | 0 | 2 | 3 | 2 | 4 | 2 | 4 | 6 | 3 | 3 | 2 | 4 | 2 |
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