; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/01/28/oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/01/28/oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/01/28/oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/01/28/oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/01/28/oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 13 8 4 1 0 26 0 1 0 0 19 10 9 7
c 2 2 0 1 26 0 24 1 0 0 5 12 7 4
g 4 7 12 5 0 0 1 24 0 26 1 0 2 2
t 7 9 10 19 0 0 1 0 26 0 1 4 8 13
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m1_rc.png
;
a 6 7 8 12 12 1 0 1 0 0 0 1 4 2 1 4
c 3 2 2 0 0 11 0 0 0 0 0 8 0 0 3 3
g 2 2 1 1 1 0 0 12 0 13 13 0 5 4 0 2
t 2 2 2 0 0 1 13 0 13 0 0 4 4 7 9 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m2_rc.png
;
a 12 5 7 3 0 25 0 0 0 1 23 7 10 6
c 2 4 1 2 24 0 25 1 0 0 1 12 5 3
g 4 6 5 9 1 0 0 24 0 24 1 1 3 1
t 7 10 12 11 0 0 0 0 25 0 0 5 7 15
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m3_rc.png
;
a 15 7 4 1 2 24 0 1 2 1 19 18 8 7
c 0 2 0 2 22 0 22 0 0 0 5 3 7 5
g 3 7 18 1 0 0 2 23 0 23 0 0 2 2
t 7 9 3 21 1 1 1 1 23 1 1 4 8 11
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m4_rc.png
;
a 19 9 10 3 0 36 0 1 0 0 24 12 12 9
c 3 5 2 2 36 0 34 1 0 0 7 12 10 5
g 5 10 12 7 0 0 1 34 0 36 2 2 5 3
t 9 12 12 24 0 0 1 0 36 0 3 10 9 19
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m5_rc.png
;
a 10 9 2 32 1 1 1 33 4 9 5
c 11 6 1 0 1 2 29 0 1 7 4
g 5 5 3 1 28 0 1 0 0 7 10
t 7 13 27 0 3 30 2 0 28 10 14
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m6_rc.png
;
a 6 8 1 0 1 19 1 0 20 16 5 8
c 4 4 2 0 19 0 0 0 0 1 3 2
g 2 3 1 0 0 0 0 19 0 2 4 4
t 8 5 16 20 0 1 19 1 0 1 8 6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m7_rc.png
;
a 4 8 0 0 0 4 1 20 1 5 7
c 7 2 17 0 16 0 19 0 1 4 4
g 5 6 3 20 0 16 0 0 1 9 2
t 4 4 0 0 4 0 0 0 17 2 7
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m8_rc.png
;
a 4 1 0 9 0 0 0 9 2 4
c 1 1 0 0 9 0 9 0 1 1
g 0 2 9 0 0 0 0 0 3 1
t 4 5 0 0 0 9 0 0 3 3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/01/28//oligo-analysis_2025-01-28.203954_dk4z3A_pssm_count_matrices_logo_m9_rc.png
;
; Host name rsat
; Job started 2025-01-28.204001
; Job done 2025-01-28.204004
; Seconds 0.17
; user 0.17
; system 0.1
; cuser 2.31
; csystem 0.42