; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/02/04/oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/02/04/oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/02/04/oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/02/04/oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/02/04/oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 842 849 554 1877 1844 218 1846 1840 178 1555 1567 324 379 1382 526 762 784
c 284 345 968 64 54 69 63 58 62 116 89 114 150 123 204 273 290
g 284 223 152 35 38 54 50 47 46 125 111 95 124 174 839 271 279
t 658 651 394 92 132 1727 109 123 1782 272 301 1535 1415 389 499 762 715
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m1_rc.png
;
a 3542 3446 1000 7865 8199 8273 8296 8087 1435 3843 3569
c 1213 1223 405 279 170 160 112 151 496 1115 1180
g 1292 1231 425 246 184 159 199 179 5858 1320 1263
t 2793 2940 7010 450 287 248 233 423 1051 2562 2828
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m2_rc.png
;
a 1801 2011 334 4539 273 4586 617 288 4478 1783 1800
c 708 652 105 87 135 65 290 85 136 661 700
g 637 722 104 157 101 142 3532 106 120 780 683
t 1944 1705 4547 307 4581 297 651 4611 356 1866 1907
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m3_rc.png
;
a 86 83 42 13 304 8 17 10 15 23 86 114
c 59 60 246 286 1 291 2 3 4 7 89 59
g 59 89 7 4 3 2 291 1 286 246 60 59
t 114 86 23 15 10 17 8 304 13 42 83 86
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m4_rc.png
;
a 145 136 63 15 26 24 13 20 433 27 142 167
c 79 47 22 2 9 364 420 409 2 12 54 69
g 67 75 17 411 397 28 0 4 5 6 74 49
t 155 188 344 18 14 30 13 13 6 401 176 161
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m5_rc.png
;
a 423 395 0 1090 1090 0 0 1090 399 426
c 167 186 0 0 0 0 1090 0 186 178
g 142 143 0 0 0 0 0 0 121 153
t 358 366 1090 0 0 1090 0 0 384 333
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m6_rc.png
;
a 3447 3380 1673 7904 7859 1048 7748 7920 7778 3762 3515
c 1234 1559 5701 213 205 415 232 140 166 1132 1190
g 1261 1042 392 123 130 344 201 140 136 1113 1197
t 2590 2551 766 292 338 6725 351 332 452 2525 2630
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m7_rc.png
;
a 58 45 0 183 183 0 0 0 45 43
c 32 57 183 0 0 183 0 0 41 43
g 25 16 0 0 0 0 183 183 20 26
t 68 65 0 0 0 0 0 0 77 71
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m8_rc.png
;
a 52 60 0 185 0 0 185 0 68 46
c 39 38 185 0 185 0 0 0 26 33
g 31 23 0 0 0 185 0 185 34 44
t 63 64 0 0 0 0 0 0 57 62
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m9_rc.png
;
a 5784 6062 5061 9883 10299 11595 11703 11759 11726 11528 4215 6288 5833
c 1633 1613 1224 622 595 288 226 213 182 190 728 1442 1531
g 1790 1669 1130 757 665 312 290 296 276 304 6206 1685 1833
t 3329 3192 5121 1274 977 341 317 268 352 514 1387 3121 3339
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m10_rc.png
;
a 708 669 156 1599 292 152 1625 268 159 1601 168 1535 604 650
c 223 301 69 43 1141 59 53 1177 60 49 93 56 279 286
g 247 247 51 63 126 52 30 116 31 50 57 54 214 249
t 664 625 1566 137 283 1579 134 281 1592 142 1524 197 745 657
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m11_rc.png
;
a 224 274 73 57 39 65 7 25 681 263 266
c 111 118 16 625 687 22 8 20 9 162 134
g 132 149 655 30 16 625 7 13 41 143 98
t 318 244 41 73 43 73 763 727 54 217 287
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/04//oligo-analysis_2025-02-04.054448_6Rtnnb_pssm_count_matrices_logo_m12_rc.png
;
; Host name rsat
; Job started 2025-02-04.054504
; Job done 2025-02-04.054510
; Seconds 0.8
; user 0.8
; system 0.17
; cuser 4.22
; csystem 0.72