RSAT - peak-motifs result

Analysis: testpm (17/02/2025 15:22)

peak-motifs  -v 1 -title testpm -i $RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.152136_2025-02-17.152136_cdtReb/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 8 -no_merge_lengths -2str -origin end -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.152136_2025-02-17.152136_cdtReb

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: gaggctcgagcctc (sig=18.70; e-value=2e-19) RC: gaggctcgagcctc oligos_6nt_mkv2_m2 assembly: gaggctcgagccca (sig=18.70; e-value=2e-19) RC: tgggctcgagcctc oligos_6nt_mkv2_m3 assembly: caagcc (sig=1.95; e-value=0.011) RC: ggcttg oligos_6nt_mkv2_m4 assembly: accctaacc (sig=1.88; e-value=0.013) RC: ggttagggt oligos_6nt_mkv2_m5 assembly: cctccg (sig=1.47; e-value=0.034) RC: cggagg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: tcggaggctcgagcctccga (sig=17.08; e-value=8.3e-18) RC: tcggaggctcgagcctccga oligos_7nt_mkv2_m2 assembly: tcggaggctcgagcccc (sig=17.08; e-value=8.3e-18) RC: ggggctcgagcctccga oligos_7nt_mkv2_m3 assembly: gcctcgagcctccga (sig=17.08; e-value=8.3e-18) RC: tcggaggctcgaggc oligos_7nt_mkv2_m4 assembly: accctaacc (sig=3.49; e-value=0.00032) RC: ggttagggt oligos_7nt_mkv2_m5 assembly: ccccgagcctccga (sig=11.26; e-value=5.5e-12) RC: tcggaggctcgggg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]
oligos_8nt_mkv2	oligos_8nt_mkv2_m1 assembly: gcctcgagcctccgag (sig=21.44; e-value=3.6e-22) RC: ctcggaggctcgaggc oligos_8nt_mkv2_m2 assembly: taaccctaaccc (sig=4.88; e-value=1.3e-05) RC: gggttagggtta oligos_8nt_mkv2_m3 assembly: ccccgagcccc (sig=4.18; e-value=6.6e-05) RC: ggggctcgggg oligos_8nt_mkv2_m4 assembly: cccaagccc (sig=2.97; e-value=0.0011) RC: gggcttggg oligos_8nt_mkv2_m5 assembly: gaaggctcgaggc (sig=21.44; e-value=3.6e-22) RC: gcctcgagccttc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_8nt	Not a single significant pattern	[positions_8nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=18.70; evalue=2e-19 yRRmGSCtCGaGSCkyyr YRRMGSCTCGAGSCKYYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (12.00%) Max nb of predicted sites per peak: 16  (Sly00g0382811) Mean nb of predicted sites per peak: 12.67	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=18.70; evalue=2e-19 yrrmGSCtCGaGSCbyCg CGRVGSCTCGAGSCKYYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (12.00%) Max nb of predicted sites per peak: 19  (Sly00g0382811) Mean nb of predicted sites per peak: 12.83	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=1.95; evalue=0.011 syCraGCCyy RRGGCTYGRS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 11 (22.00%) Max nb of predicted sites per peak: 11  (Sly00g0382811) Mean nb of predicted sites per peak: 5.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=1.88; evalue=0.013 taACCCTAACCCt AGGGTTAGGGTTA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (6.00%) Max nb of predicted sites per peak: 17  (Sly00g0382971) Mean nb of predicted sites per peak: 10.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=1.47; evalue=0.034 vgCCTCCGss SSCGGAGGCB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 12 (24.00%) Max nb of predicted sites per peak: 4  (Sly00g0382791) Mean nb of predicted sites per peak: 1.58	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=17.08; evalue=8.3e-18 smmCGRmGSCTCGaGSCkyCGkks SMMCGRMGSCTCGAGSCKYCGKKS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (12.00%) Max nb of predicted sites per peak: 17  (Sly00g0382801) Mean nb of predicted sites per peak: 11.83	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=17.08; evalue=8.3e-18 SCcCGRaGSCtCGaGsCgYCg CGRCGSCTCGAGSCTYCGGGS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (12.00%) Max nb of predicted sites per peak: 16  (Sly00g0382801) Mean nb of predicted sites per peak: 11.67	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=17.08; evalue=8.3e-18 rygCCtCGaGCCyCCgrSS SSYCGGRGGCTCGAGGCRY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (14.00%) Max nb of predicted sites per peak: 20  (Sly00g0382811) Mean nb of predicted sites per peak: 10.57	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=3.49; evalue=0.00032 taaCCCTAACCCt AGGGTTAGGGTTA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (10.00%) Max nb of predicted sites per peak: 17  (Sly00g0382971) Mean nb of predicted sites per peak: 6.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=11.26; evalue=5.5e-12 ygCCyCGaGCCyCCGrSS SSYCGGRGGCTCGRGGCR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 8 (16.00%) Max nb of predicted sites per peak: 15  (Sly00g0382811) Mean nb of predicted sites per peak: 7.62	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_8nt_mkv2_m1	k-mer sig=21.44; evalue=3.6e-22 rygCCtCGaGCCyCYgrSSs SSSYCRGRGGCTCGAGGCRY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (14.00%) Max nb of predicted sites per peak: 19  (Sly00g0382811) Mean nb of predicted sites per peak: 10.86	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_8nt_mkv2_m2	k-mer sig=4.88; evalue=1.3e-05 CCwaaCCCtAaCCCta TAGGGTTAGGGTTWGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (8.00%) Max nb of predicted sites per peak: 25  (Sly00g0382971) Mean nb of predicted sites per peak: 12.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   oligos_8nt_mkv2_m3	k-mer sig=4.18; evalue=6.6e-05 ykCCyCGAGCCCCcs SGGGGGCTCGRGGMR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 9 (18.00%) Max nb of predicted sites per peak: 12  (Sly00g0382811) Mean nb of predicted sites per peak: 6.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   oligos_8nt_mkv2_m4	k-mer sig=2.97; evalue=0.0011 tyCCCraGCCCcm KGGGGCTYGGGRA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (32.00%) Max nb of predicted sites per peak: 8  (Sly00g0382801) Mean nb of predicted sites per peak: 3.56	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   oligos_8nt_mkv2_m5	k-mer sig=21.44; evalue=3.6e-22 ybGrrGGCTCGaGGcry RYGCCTCGAGCCYYCVR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (14.00%) Max nb of predicted sites per peak: 18  (Sly00g0382811) Mean nb of predicted sites per peak: 10.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title testpm -i $RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.152136_2025-02-17.152136_cdtReb/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 8 -no_merge_lengths -2str -origin end -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.152136_2025-02-17.152136_cdtReb

Warning: Not a single pattern was found in file tmp/www-data/2025/02/17/peak-motifs.2025-02-17.152136_2025-02-17.152136_cdtReb/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/02/17/peak-motifs.2025-02-17.152136_2025-02-17.152136_cdtReb/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/02/17/peak-motifs.2025-02-17.152136_2025-02-17.152136_cdtReb/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50.tab