/var/www/html/rsat/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Peask03 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	109
	Sum of sequence lengths      	46107
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	423
	Possible positions           	45998
 Oligonucleotide statistics:
	Total occurrences    	45828
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	45998
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	2	40
	2	-24	[-479,-460]	-469.5	5	88
	3	-23	[-459,-440]	-449.5	6	111
	4	-22	[-439,-420]	-429.5	8	132
	5	-21	[-419,-400]	-409.5	12	164
	6	-20	[-399,-380]	-389.5	12	240
	7	-19	[-379,-360]	-369.5	13	256
	8	-18	[-359,-340]	-349.5	17	304
	9	-17	[-339,-320]	-329.5	21	364
	10	-16	[-319,-300]	-309.5	26	425
	11	-15	[-299,-280]	-289.5	26	520
	12	-14	[-279,-260]	-269.5	35	664
	13	-13	[-259,-240]	-249.5	39	744
	14	-12	[-239,-220]	-229.5	47	828
	15	-11	[-219,-200]	-209.5	59	952
	16	-10	[-199,-180]	-189.5	59	1180
	17	-9	[-179,-160]	-169.5	63	1244
	18	-8	[-159,-140]	-149.5	72	1359
	19	-7	[-139,-120]	-129.5	78	1476
	20	-6	[-119,-100]	-109.5	90	1572
	21	-5	[-99,-80]	-89.5	90	1800
	22	-4	[-79,-60]	-69.5	109	2104
	23	-3	[-59,-40]	-49.5	109	2180
	24	-2	[-39,-20]	-29.5	109	2180
	25	-1	[-19,0]	-9.5	109	2180
	26	0	[1,20]	10.5	109	2180
	27	1	[21,40]	30.5	109	2180
	28	2	[41,60]	50.5	109	2180
	29	3	[61,80]	70.5	109	2066
	30	4	[81,100]	90.5	90	1788
	31	5	[101,120]	110.5	78	1560
	32	6	[121,140]	130.5	78	1464
	33	7	[141,160]	150.5	72	1341
	34	8	[161,180]	170.5	63	1236
	35	9	[181,200]	190.5	59	1168
	36	10	[201,220]	210.5	47	940
	37	11	[221,240]	230.5	47	812
	38	12	[241,260]	250.5	39	736
	39	13	[261,280]	270.5	35	646
	40	14	[281,300]	290.5	26	515
	41	15	[301,320]	310.5	21	420
	42	16	[321,340]	330.5	21	356
	43	17	[341,360]	350.5	17	296
	44	18	[361,380]	370.5	13	254
	45	19	[381,400]	390.5	12	236
	46	20	[401,420]	410.5	8	160
	47	21	[421,440]	430.5	8	128
	48	22	[441,460]	450.5	6	109
	49	23	[461,480]	470.5	5	82
	50	24	[481,500]	490.5	2	38

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
cc cc 2216 115.4 49 2.8e-07 4.4e-06 5.35 1 1 4 5 7 10 12 15 22 13 21 32 38 39 30 36 67 72 74 106 97 99 114 122 115 109 108 71 84 72 86 65 74 59 50 36 30 43 23 44 19 8 16 19 20 9 7 4 6 2 1
aa aa 3963 112.9 49 5.9e-07 9.5e-06 5.02 2 7 5 8 5 14 21 21 33 35 64 48 64 73 87 102 106 103 148 117 127 137 213 174 204 184 160 199 193 157 142 118 120 97 96 70 78 73 77 44 38 20 35 38 26 31 18 9 8 11 5
gg gg 2069 96.1 49 6.7e-05 0.0011 2.97 3 4 5 6 8 6 7 10 11 16 10 20 19 22 34 39 31 37 63 47 52 75 94 95 104 102 98 158 109 100 84 74 74 62 51 62 42 46 41 23 20 20 21 16 13 9 7 9 4 6 3
tt tt 4403 80.2 49 3.2e-03 0.052 1.29 4 3 3 8 28 17 15 24 29 32 40 45 75 80 69 100 136 105 114 133 140 175 173 191 203 218 234 199 204 204 156 151 143 141 130 138 90 65 93 72 54 43 26 25 16 21 12 11 7 9 3
ct ct 2823 61.6 49 1.1e-01 1.7 -0.23 5 3 3 7 8 15 23 14 15 18 17 45 35 46 42 53 72 77 92 107 101 108 127 158 127 137 140 107 121 112 113 107 96 71 90 69 62 49 37 38 34 24 19 12 17 14 12 12 13 1 3
gt gt 2654 57.9 49 1.8e-01 2.9 -0.46 6 2 5 8 7 8 9 18 26 32 22 35 39 41 46 52 59 66 70 71 82 108 113 108 115 105 127 145 127 116 118 104 79 87 72 78 57 42 43 47 37 38 28 15 13 12 8 4 3 7 0
ag ag 2902 53.7 49 3.0e-01 4.8 -0.68 7 2 4 9 7 7 18 19 23 32 23 27 47 38 62 68 70 90 88 85 102 111 115 112 135 141 126 167 129 132 113 105 85 89 68 86 56 57 44 38 24 28 27 11 16 21 14 13 9 8 1
gc gc 1742 52.0 49 3.6e-01 5.7 -0.76 8 1 5 2 8 8 13 8 7 14 16 17 23 24 34 34 37 54 51 69 62 73 72 85 85 84 85 73 72 78 50 62 56 50 47 50 35 30 17 19 9 25 19 11 15 18 8 11 12 3 1
tg tg 2913 49.9 49 4.4e-01 7 -0.85 9 2 8 8 8 11 11 16 15 27 25 29 34 42 45 58 64 64 83 72 94 117 139 130 126 133 138 148 150 122 131 113 102 96 75 84 72 52 39 44 45 39 30 14 14 13 9 9 6 6 1
tc tc 2839 46.4 49 5.8e-01 9.3 -0.97 10 1 3 9 8 12 21 14 20 14 20 42 34 52 49 56 70 78 83 95 96 106 125 156 136 156 140 106 143 139 115 114 99 68 75 64 58 36 44 39 32 21 18 18 15 10 10 7 6 3 3
at at 3869 45.6 49 6.1e-01 9.8 -0.99 11 1 6 10 7 13 17 22 17 30 42 39 56 72 69 84 109 105 103 120 138 149 171 200 184 193 168 162 203 204 141 126 139 111 100 95 80 69 58 58 56 32 17 28 17 14 11 4 8 6 5
ca ca 3043 44.5 49 6.6e-01 11 -1.02 12 3 8 4 8 11 22 18 19 19 26 31 43 53 63 66 86 89 86 97 93 129 166 148 151 165 159 129 143 143 108 100 94 82 71 69 69 51 41 38 25 26 22 25 11 14 5 8 4 1 1
ac ac 2653 43.2 49 7.1e-01 11 -1.05 13 5 9 6 6 11 16 13 19 14 23 32 37 43 53 46 77 78 79 94 102 111 152 129 131 116 135 120 103 106 108 73 73 73 76 58 61 52 47 34 29 21 20 20 13 11 5 7 3 1 2
cg cg 1365 41.8 49 7.6e-01 12 -1.08 14 1 6 4 5 3 5 8 8 10 15 14 19 18 27 22 24 46 35 57 55 51 56 74 71 54 63 58 59 62 53 47 36 39 39 36 22 19 24 19 10 18 15 11 16 8 7 6 3 5 2
ta ta 3580 39.7 49 8.3e-01 13 -1.12 15 2 5 7 6 12 18 23 24 34 39 44 62 67 65 75 104 105 105 124 132 148 150 173 168 139 160 159 165 157 133 107 108 110 111 94 69 70 57 57 49 37 21 19 14 16 13 4 11 6 2
ga ga 2794 39.6 49 8.3e-01 13 -1.12 16 2 9 10 6 6 12 13 16 24 22 20 39 34 53 61 68 75 85 82 99 103 124 125 125 140 119 154 135 128 132 94 86 87 65 76 59 58 51 32 34 20 22 14 18 15 14 10 6 7 5 
 Host name	rsat
 Job started	2025-02-17.164749
 Job done	2025-02-17.164750
 Seconds	0.4
	user	0.4
	system	0.01
	cuser	0
;	csystem	0