/var/www/html/rsat/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_disco_compa
	html_index   	$RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	14	80
		file1	2	13	79
		file1	3	13	74
		file1	4	14	197
		file1	5	13	114
		file1	6	16	80
		file1	7	15	63
		file1	8	12	104
		file1	9	17	157
		file1	10	16	69
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		14		80
		file2		2		13		79
		file2		3		13		74
		file2		4		14		197
		file2		5		13		114
		file2		6		16		80
		file2		7		15		63
		file2		8		12		104
		file2		9		17		157
		file2		10		16		69
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 0.897 0.897 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 0.897 0.897 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 0.943 0.884 16 15 15 16 0.9375 0.9375 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 0.943 0.884 15 16 15 16 0.9375 1.0000 0.9375 D 0
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 0.945 0.882 15 14 14 15 0.9333 0.9333 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 0.945 0.882 14 15 14 15 0.9333 1.0000 0.9333 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 0.986 0.863 14 16 14 16 0.8750 1.0000 0.8750 D 0
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 0.986 0.863 16 14 14 16 0.8750 0.8750 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m2 0.894 0.830 14 13 13 14 0.9286 0.9286 1.0000 R 1
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m1 0.894 0.830 13 14 13 14 0.9286 1.0000 0.9286 R 0
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 0.978 0.806 14 17 14 17 0.8235 1.0000 0.8235 D 0
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 0.978 0.806 17 14 14 17 0.8235 0.8235 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 0.977 0.794 13 16 13 16 0.8125 1.0000 0.8125 R -2
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 0.977 0.794 16 13 13 16 0.8125 0.8125 1.0000 R 1
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m4 0.853 0.792 13 14 13 14 0.9286 1.0000 0.9286 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m5 0.853 0.792 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 0.882 0.772 14 16 14 16 0.8750 1.0000 0.8750 D 0
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 0.882 0.772 16 14 14 16 0.8750 0.8750 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 0.805 0.755 15 16 15 16 0.9375 1.0000 0.9375 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 0.805 0.755 16 15 15 16 0.9375 0.9375 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 0.915 0.743 13 16 13 16 0.8125 1.0000 0.8125 R -2
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 0.915 0.743 16 13 13 16 0.8125 0.8125 1.0000 R 1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 0.813 0.705 15 13 13 15 0.8667 0.8667 1.0000 R 1
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 0.813 0.705 13 15 13 15 0.8667 1.0000 0.8667 R -1
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m5 0.820 0.627 17 13 13 17 0.7647 0.7647 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m4 0.820 0.627 13 17 13 17 0.7647 1.0000 0.7647 D 0 
 Host name	rsat
 Job started	2025-02-17.164810
 Job done	2025-02-17.164817
 Seconds	0.32
	user	0.32
	system	0.22
	cuser	4.98
;	csystem	0.9