RSAT - peak-motifs result

Analysis: Peask03 (17/02/2025 16:48)

peak-motifs  -v 1 -title Peask03 -i $RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: ggaccaatca (sig=12.93; e-value=1.2e-13) RC: tgattggtcc oligos_6nt_mkv2_m2 assembly: tgattggct (sig=8.92; e-value=1.2e-09) RC: agccaatca oligos_6nt_mkv2_m3 assembly: ctcatcgct (sig=7.51; e-value=3.1e-08) RC: agcgatgag oligos_6nt_mkv2_m4 assembly: tccctccccc (sig=7.47; e-value=3.4e-08) RC: gggggaggga oligos_6nt_mkv2_m5 assembly: tcccttccc (sig=3.05; e-value=0.00089) RC: gggaaggga	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: tgaccaatcaga (sig=23.14; e-value=7.2e-24) RC: tctgattggtca oligos_7nt_mkv2_m2 assembly: tgaccaatgag (sig=13.97; e-value=1.1e-14) RC: ctcattggtca oligos_7nt_mkv2_m3 assembly: tcatgtga (sig=8.34; e-value=4.6e-09) RC: tcacatga oligos_7nt_mkv2_m4 assembly: tccctccccccca (sig=7.59; e-value=2.6e-08) RC: tgggggggaggga oligos_7nt_mkv2_m5 assembly: cagccaatcaga (sig=23.14; e-value=7.2e-24) RC: tctgattggctg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=12.93; evalue=1.2e-13 yygGaCCAATSAga TCTSATTGGTCCRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 52 (47.71%) Max nb of predicted sites per peak: 5  (ChrD_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.23	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=8.92; evalue=1.2e-09 kcTGATTGGCyvr YBRGCCAATCAGM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 56 (51.38%) Max nb of predicted sites per peak: 3  (ChrL_C_glabrata_CBS138_bPeak_3) Mean nb of predicted sites per peak: 1.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=7.51; evalue=3.1e-08 agCtCATCGCwms SKWGCGATGAGCT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 28 (25.69%) Max nb of predicted sites per peak: 5  (ChrG_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.46	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=7.47; evalue=3.4e-08 ccyCCCyCCCCCcc GGGGGGGRGGGRGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 39 (35.78%) Max nb of predicted sites per peak: 21  (ChrM_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 5.90	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=3.05; evalue=0.00089 cyyCCCTtCCCcc GGGGGAAGGGRRG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 41 (37.61%) Max nb of predicted sites per peak: 9  (ChrM_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 2.37	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=23.14; evalue=7.2e-24 yykGaCCAATCAGayy RRTCTGATTGGTCMRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 52 (47.71%) Max nb of predicted sites per peak: 5  (ChrD_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=13.97; evalue=1.1e-14 wbkGACCAATGAGad HTCTCATTGGTCMVW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 45 (41.28%) Max nb of predicted sites per peak: 5  (ChrD_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.22	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=8.34; evalue=4.6e-09 drtCAyGTGAyw WRTCACRTGAYH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 34 (31.19%) Max nb of predicted sites per peak: 8  (ChrC_C_glabrata_CBS138_bPeak_4) Mean nb of predicted sites per peak: 2.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=7.59; evalue=2.6e-08 cyyCCCyCCCCCCCccc GGGGGGGGGGRGGGRRG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 37 (33.94%) Max nb of predicted sites per peak: 29  (ChrJ_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 7.05	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=23.14; evalue=7.2e-24 yysrgCCAATCAGatc GATCTGATTGGCYSRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 54 (49.54%) Max nb of predicted sites per peak: 3  (ChrL_C_glabrata_CBS138_bPeak_3) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title Peask03 -i $RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf

Warning: Not a single pattern was found in file tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/02/17/peak-motifs.2025-02-17.164746_2025-02-17.164746_PLsVEf/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab