/var/www/html/rsat/public_html/tmp/www-data/2025/02/25/peak-motifs.2025-02-25.153813_2025-02-25.153813_MpHLQf/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/02/25/peak-motifs.2025-02-25.153813_2025-02-25.153813_MpHLQf/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Promoter_regions_2000 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/02/25/peak-motifs.2025-02-25.153813_2025-02-25.153813_MpHLQf/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/02/25/peak-motifs.2025-02-25.153813_2025-02-25.153813_MpHLQf/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/02/25/peak-motifs.2025-02-25.153813_2025-02-25.153813_MpHLQf/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	9
	Sum of sequence lengths      	9000
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	1000
	Possible positions           	8991
 Sequences:
	#	length	ID
	1	1000	TraesCS3A02G230000
	2	1000	TraesCS3B02G448000
	3	1000	TraesCS2B02G533400
	4	1000	TraesCS2A02G004600
	5	1000	TraesCS1A02G362100
	6	1000	TraesCS1A02G333800
	7	1000	TraesCS4B02G198000
	8	1000	TraesCS2B02G538800
	9	1000	TraesCS6A02G024100
 Oligonucleotide statistics:
	Total occurrences    	8797
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	8991
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	9	180
	2	-24	[-479,-460]	-469.5	9	180
	3	-23	[-459,-440]	-449.5	9	180
	4	-22	[-439,-420]	-429.5	9	180
	5	-21	[-419,-400]	-409.5	9	180
	6	-20	[-399,-380]	-389.5	9	180
	7	-19	[-379,-360]	-369.5	9	180
	8	-18	[-359,-340]	-349.5	9	180
	9	-17	[-339,-320]	-329.5	9	180
	10	-16	[-319,-300]	-309.5	9	180
	11	-15	[-299,-280]	-289.5	9	180
	12	-14	[-279,-260]	-269.5	9	180
	13	-13	[-259,-240]	-249.5	9	180
	14	-12	[-239,-220]	-229.5	9	180
	15	-11	[-219,-200]	-209.5	9	180
	16	-10	[-199,-180]	-189.5	9	180
	17	-9	[-179,-160]	-169.5	9	180
	18	-8	[-159,-140]	-149.5	9	180
	19	-7	[-139,-120]	-129.5	9	180
	20	-6	[-119,-100]	-109.5	9	180
	21	-5	[-99,-80]	-89.5	9	180
	22	-4	[-79,-60]	-69.5	9	180
	23	-3	[-59,-40]	-49.5	9	180
	24	-2	[-39,-20]	-29.5	9	180
	25	-1	[-19,0]	-9.5	9	180
	26	0	[1,20]	10.5	9	180
	27	1	[21,40]	30.5	9	180
	28	2	[41,60]	50.5	9	180
	29	3	[61,80]	70.5	9	180
	30	4	[81,100]	90.5	9	180
	31	5	[101,120]	110.5	9	180
	32	6	[121,140]	130.5	9	180
	33	7	[141,160]	150.5	9	180
	34	8	[161,180]	170.5	9	180
	35	9	[181,200]	190.5	9	180
	36	10	[201,220]	210.5	9	180
	37	11	[221,240]	230.5	9	180
	38	12	[241,260]	250.5	9	180
	39	13	[261,280]	270.5	9	180
	40	14	[281,300]	290.5	9	180
	41	15	[301,320]	310.5	9	180
	42	16	[321,340]	330.5	9	180
	43	17	[341,360]	350.5	9	180
	44	18	[361,380]	370.5	9	180
	45	19	[381,400]	390.5	9	180
	46	20	[401,420]	410.5	9	180
	47	21	[421,440]	430.5	9	180
	48	22	[441,460]	450.5	9	180
	49	23	[461,480]	470.5	9	180
	50	24	[481,500]	490.5	9	171

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
cc cc 777 133.8 49 8.5e-10 1.4e-08 7.86 1 3 9 5 14 10 17 17 10 12 12 11 25 18 14 8 5 19 8 11 14 21 12 9 13 12 13 10 12 10 12 18 33 13 30 20 25 21 19 21 21 15 19 24 21 22 18 12 20 12 27
tt tt 522 120.5 49 5.9e-08 9.4e-07 6.03 2 5 13 11 13 15 7 11 11 8 14 11 14 8 10 15 19 6 5 16 9 4 5 11 10 17 10 7 17 13 6 4 3 14 7 18 19 20 16 7 3 11 2 14 12 22 7 4 5 6 7
gg gg 576 94.3 49 1.1e-04 0.0017 2.77 3 16 19 19 13 15 15 20 21 23 6 12 7 7 14 10 18 16 15 4 4 10 9 10 11 16 5 10 12 8 16 11 5 16 8 6 8 8 10 5 6 10 11 11 14 12 10 13 15 10 6
aa aa 532 77.6 49 5.7e-03 0.092 1.04 4 14 9 7 11 7 4 8 8 13 10 11 13 11 8 12 2 7 13 8 16 10 12 10 13 7 17 14 11 12 17 18 14 14 5 19 11 4 6 13 7 8 19 9 16 6 7 15 6 13 7
ac ac 489 68.9 49 3.2e-02 0.51 0.29 5 7 6 6 9 8 4 9 2 11 11 9 10 18 5 6 11 18 9 8 14 10 10 13 10 7 9 9 4 9 14 5 14 5 11 13 10 9 10 11 11 12 16 5 7 9 17 17 13 9 9
ag ag 521 67.9 49 3.8e-02 0.61 0.21 6 19 13 14 12 10 9 5 20 11 5 5 4 9 9 3 9 16 14 8 9 17 11 9 10 6 9 14 13 14 15 11 10 7 11 6 6 12 10 12 13 17 11 10 8 9 5 10 10 13 8
ga ga 478 66.0 49 5.3e-02 0.85 0.07 7 14 9 12 12 8 7 7 12 12 4 12 5 11 4 13 3 10 8 9 12 10 10 12 10 5 15 7 10 14 12 17 11 7 11 3 4 11 12 15 9 17 7 6 5 6 9 12 7 14 6
gc gc 719 64.0 49 7.3e-02 1.2 -0.07 8 14 16 15 16 18 28 16 18 12 18 16 12 14 23 13 13 13 16 13 7 13 9 8 10 11 6 10 18 10 15 14 11 14 14 11 14 15 12 8 19 10 24 21 19 19 17 16 15 11 14
cg cg 580 57.4 49 1.9e-01 3.1 -0.49 9 7 13 13 10 15 21 14 12 8 19 15 15 14 14 9 13 8 6 9 10 6 10 9 10 8 5 6 13 15 7 17 14 12 11 13 11 10 14 9 14 11 11 13 9 9 18 17 6 11 16
gt gt 453 57.1 49 2.0e-01 3.2 -0.50 10 11 15 14 4 11 11 8 11 10 14 8 10 8 9 6 19 6 11 11 11 3 7 11 9 8 6 10 9 13 10 8 12 10 5 9 7 10 11 14 9 6 2 6 4 7 8 4 9 10 8
tc tc 594 51.6 49 3.7e-01 6 -0.78 11 11 11 13 11 14 11 14 12 9 15 12 17 8 14 21 11 9 10 7 11 6 14 12 7 14 10 12 10 18 4 13 9 17 12 14 13 8 10 13 15 13 6 15 10 7 12 10 14 15 20
ca ca 657 47.1 49 5.5e-01 8.8 -0.94 12 17 9 10 13 14 10 12 9 14 11 10 13 19 11 8 12 23 14 10 9 16 14 15 10 11 11 9 10 12 17 9 12 15 15 13 16 17 14 9 14 20 20 11 15 9 18 15 20 11 11
ct ct 562 45.6 49 6.1e-01 9.8 -0.99 13 10 10 10 13 10 13 14 12 8 14 11 11 8 17 23 11 10 14 10 10 8 9 8 10 10 11 15 10 8 9 9 5 10 9 14 9 7 4 12 14 9 14 14 16 13 11 13 13 15 14
tg tg 548 44.2 49 6.7e-01 11 -1.03 14 14 14 12 11 13 16 13 10 10 16 14 8 10 16 15 17 5 13 16 10 4 6 10 10 12 10 10 12 8 12 11 11 10 8 6 9 11 13 14 11 8 7 10 11 14 12 6 14 10 5
ta ta 330 38.3 49 8.6e-01 14 -1.14 15 6 7 8 7 4 1 4 6 9 5 7 7 6 6 4 10 8 8 10 7 11 9 4 9 6 10 10 5 6 8 4 7 5 7 9 7 6 6 8 7 3 6 4 4 9 3 9 3 10 5
at at 459 36.6 49 9.0e-01 14 -1.16 16 12 7 11 11 8 6 8 6 10 6 16 9 11 6 14 7 6 7 10 7 11 13 9 8 10 13 7 9 10 6 11 9 11 16 6 11 11 13 9 7 10 5 7 9 7 8 7 10 10 8 
 Host name	rsat
 Job started	2025-02-25.153818
 Job done	2025-02-25.153818
 Seconds	0.17
	user	0.17
	system	0.02
	cuser	0
;	csystem	0