; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/02/25/peak-motifs.2025-02-25.153813_2025-02-25.153813_MpHLQf/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/02/25/peak-motifs.2025-02-25.153813_2025-02-25.153813_MpHLQf/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/02/25/peak-motifs.2025-02-25.153813_2025-02-25.153813_MpHLQf/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/02/25/peak-motifs.2025-02-25.153813_2025-02-25.153813_MpHLQf/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	2	3	0	0	0	0	0	0	1	4
c	8	9	18	0	18	18	0	18	4	3
g	3	5	0	0	0	0	0	0	6	5
t	5	1	0	18	0	0	18	0	7	6
//
; Sites	18
>site_0
GGCTCCTCTC
>site_1
CCCTCCTCCT
>site_2
TCCTCCTCGT
>site_3
CACTCCTCCA
>site_4
ACCTCCTCCA
>site_5
CCCTCCTCTC
>site_6
GCCTCCTCTA
>site_7
CGCTCCTCTG
>site_8
CCCTCCTCGT
>site_9
TTCTCCTCTG
>site_10
TACTCCTCTT
>site_11
GCCTCCTCGG
>site_12
CGCTCCTCCC
>site_13
CACTCCTCGT
>site_14
CGCTCCTCGT
>site_15
ACCTCCTCGG
>site_16
TCCTCCTCAA
>site_17
TGCTCCTCTG
a	6	3	0	0	0	0	0	0	4	3
c	8	9	22	22	22	0	22	22	6	10
g	7	5	0	0	0	22	0	0	11	4
t	1	5	0	0	0	0	0	0	1	5
//
; Sites	22
>site_0
GGCCCGCCGT
>site_1
AGCCCGCCGA
>site_2
CTCCCGCCGC
>site_3
CCCCCGCCGG
>site_4
ACCCCGCCCC
>site_5
CCCCCGCCCG
>site_6
CGCCCGCCCT
>site_7
CCCCCGCCGC
>site_8
TGCCCGCCCG
>site_9
GACCCGCCGG
>site_10
CACCCGCCAA
>site_11
CCCCCGCCAC
>site_12
CCCCCGCCAT
>site_13
AACCCGCCTC
>site_14
GTCCCGCCCC
>site_15
ACCCCGCCGT
>site_16
GCCCCGCCGT
>site_17
GTCCCGCCGC
>site_18
GGCCCGCCGC
>site_19
ATCCCGCCCC
>site_20
ATCCCGCCGC
>site_21
GCCCCGCCAA
a	14	7	30	0	32	0	33	0	18	5
c	8	8	3	1	1	2	1	2	3	8
g	9	3	2	0	2	1	1	3	8	8
t	4	17	0	34	0	32	0	30	6	14
//
; Sites	35
>site_0
CCATATATTC
>site_1
GAATATATGG
>site_2
CCATATATAG
>site_3
CTATATATGG
>site_4
ATATATAGCG
>site_5
CGCTATATAT
>site_6
AAATATATAT
>site_7
ATATATATTT
>site_8
ATATATATAT
>site_9
ATATATATAT
>site_10
ATATATATAC
>site_11
GTATATATAT
>site_12
ATATATACAG
>site_13
CTGTATATAT
>site_14
GTATACATGG
>site_15
CCATGTATAC
>site_16
CCATATATAC
>site_17
GTATATATGG
>site_18
ATATATACAA
>site_19
TTGTATATAT
>site_20
GAATATCTAA
>site_21
ACATGTATGT
>site_22
ACATACATGT
>site_23
GTATAGATTT
>site_24
AAATCTATAC
>site_25
TTATATGTCA
>site_26
TGACATATAA
>site_27
TAATATATGC
>site_28
GCATATATTA
>site_29
GAATATATAG
>site_30
CTATATATTC
>site_31
ATATATAGGT
>site_32
ACCTATATAT
>site_33
AACTATATCC
>site_34
GGATATAGTT
a	3	3	16	0	0	0	18	0	6	5
c	7	4	0	0	2	0	0	1	3	5
g	5	7	0	17	16	0	0	16	4	4
t	3	4	2	1	0	18	0	1	5	4
//
; Sites	18
>site_0
GTAGGTAGGC
>site_1
GGTGGTAGTA
>site_2
CGAGGTAGAG
>site_3
CTAGGTACCA
>site_4
ACATGTAGTA
>site_5
ACAGGTAGCG
>site_6
CTAGCTAGTA
>site_7
CTAGCTAGAT
>site_8
GAAGGTATAC
>site_9
CCAGGTAGAT
>site_10
GCAGGTAGGC
>site_11
AAAGGTAGGA
>site_12
CGTGGTAGAC
>site_13
GAAGGTAGCG
>site_14
TGAGGTAGTC
>site_15
TGAGGTAGAG
>site_16
TGAGGTAGTT
>site_17
CGAGGTAGGT
a	2	2	0	0	0	0	0	0	5	3
c	8	10	21	0	21	21	0	21	6	5
g	9	5	0	21	0	0	21	0	6	11
t	2	4	0	0	0	0	0	0	4	2
//
; Sites	21
>site_0
GACGCCGCGG
>site_1
GCCGCCGCGA
>site_2
AACGCCGCCG
>site_3
GTCGCCGCCC
>site_4
GGCGCCGCGA
>site_5
CCCGCCGCGC
>site_6
CTCGCCGCAC
>site_7
CCCGCCGCTG
>site_8
GTCGCCGCAC
>site_9
CGCGCCGCCG
>site_10
AGCGCCGCGG
>site_11
GTCGCCGCAG
>site_12
CCCGCCGCCG
>site_13
GCCGCCGCCG
>site_14
GCCGCCGCTG
>site_15
CCCGCCGCCA
>site_16
GCCGCCGCGC
>site_17
TCCGCCGCTG
>site_18
TGCGCCGCAT
>site_19
CGCGCCGCTT
>site_20
CCCGCCGCAG
; Host name	rsat
; Job started	2025-02-25.153822
; Job done	2025-02-25.153822
; Seconds	0.12
;	user	0.12
;	system	0.01
;	cuser	0
;	csystem	0
