/var/www/html/rsat/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title pH_responsive_promoters -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
 Oligo length                 	1
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	6
	Sum of sequence lengths      	1200
	Min sequence length          	0
	Max sequence length          	200
	Average sequence length      	200
	Possible positions           	1200
 Sequences:
	#	length	ID
	1	200	S0785_RS07145_up200bp
	2	200	S0785_RS03160_up200bp
	3	200	SO785_RS01125_up200bp
	4	200	SO785_RS00500_up200bp
	5	200	S0785_RS09380_up200bp
	6	200	S0785_RS08845_up200bp
 Oligonucleotide statistics:
	Total occurrences    	1200
 Position interval parameters:
	Position interval    	20
	Number of windows    	10
	Total positions      	1200
	Degrees of freedom   	9
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-5	[-99,-80]	-89.5	6	120
	2	-4	[-79,-60]	-69.5	6	120
	3	-3	[-59,-40]	-49.5	6	120
	4	-2	[-39,-20]	-29.5	6	120
	5	-1	[-19,0]	-9.5	6	120
	6	0	[1,20]	10.5	6	120
	7	1	[21,40]	30.5	6	120
	8	2	[41,60]	50.5	6	120
	9	3	[61,80]	70.5	6	120
	10	4	[81,100]	90.5	6	120

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-89.5          	occurrences in window	1	[-99,-80]
	11	-69.5          	occurrences in window	2	[-79,-60]
	12	-49.5          	occurrences in window	3	[-59,-40]
	13	-29.5          	occurrences in window	4	[-39,-20]
	14	-9.5           	occurrences in window	5	[-19,0]
	15	10.5           	occurrences in window	6	[1,20]
	16	30.5           	occurrences in window	7	[21,40]
	17	50.5           	occurrences in window	8	[41,60]
	18	70.5           	occurrences in window	9	[61,80]
	19	90.5           	occurrences in window	10	[81,100]
seq id occ chi2 df Pval Eval sig rank -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5
g g 183 25.1 9 2.8e-03 0.011 1.95 1 18 12 15 18 23 13 14 23 12 35
c c 139 15.9 9 6.9e-02 0.28 0.56 2 11 18 19 8 12 19 19 14 14 5
t t 428 8.1 9 5.3e-01 2.1 -0.32 3 50 42 36 49 33 48 49 43 42 36
a a 450 5.5 9 7.9e-01 3.2 -0.50 4 41 48 50 45 52 40 38 40 52 44 
 Host name	rsat
 Job started	2025-02-27.144754
 Job done	2025-02-27.144754
 Seconds	0.09
	user	0.09
	system	0.01
	cuser	0.01
;	csystem	0