; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	0	2	0	0	5	5	0	5	5	2	1
c	2	0	0	0	0	0	0	0	0	1	1
g	1	0	0	0	0	0	5	0	0	0	0
t	2	3	5	5	0	0	0	0	0	2	3
//
; Sites	5
>site_0
TATTAAGAATT
>site_1
GATTAAGAATC
>site_2
TTTTAAGAAAT
>site_3
CTTTAAGAACA
>site_4
CTTTAAGAAAT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m1_rc.png
;
a	1	3	0	0	1	7	1	1	8	4	4
c	1	1	0	0	6	0	7	0	0	0	0
g	1	1	8	0	1	1	0	0	0	1	2
t	5	3	0	8	0	0	0	7	0	3	2
//
; Sites	8
>site_0
ATGTCACTAAT
>site_1
TAGTGACTAGA
>site_2
TAGTCACTATT
>site_3
GAGTCGCTATA
>site_4
CGGTAACTAAA
>site_5
TTGTCAATAAA
>site_6
TCGTCACAATG
>site_7
TTGTCACTAAG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.144751_2025-02-27.144751_AomCLd/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m2_rc.png
;
; Host name	rsat
; Job started	2025-02-27.144759
; Job done	2025-02-27.144800
; Seconds	0.12
;	user	0.12
;	system	0.01
;	cuser	0.49
;	csystem	0.11
