position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title reg -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 376 Sum of sequence lengths 181785 Min sequence length 0 Max sequence length 1369 Average sequence length 483 Possible positions 181785 Oligonucleotide statistics: Total occurrences 159809 Position interval parameters: Position interval 20 Number of windows 70 Total positions 181785 Degrees of freedom 69 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -35 [-699,-680] -689.5 4 20 2 -34 [-679,-660] -669.5 7 107 3 -33 [-659,-640] -649.5 11 182 4 -32 [-639,-620] -629.5 11 220 5 -31 [-619,-600] -609.5 11 220 6 -30 [-599,-580] -589.5 11 220 7 -29 [-579,-560] -569.5 14 251 8 -28 [-559,-540] -549.5 15 296 9 -27 [-539,-520] -529.5 18 352 10 -26 [-519,-500] -509.5 19 370 11 -25 [-499,-480] -489.5 22 416 12 -24 [-479,-460] -469.5 24 466 13 -23 [-459,-440] -449.5 27 502 14 -22 [-439,-420] -429.5 42 665 15 -21 [-419,-400] -409.5 46 873 16 -20 [-399,-380] -389.5 53 994 17 -19 [-379,-360] -369.5 57 1117 18 -18 [-359,-340] -349.5 66 1243 19 -17 [-339,-320] -329.5 74 1412 20 -16 [-319,-300] -309.5 85 1583 21 -15 [-299,-280] -289.5 100 1831 22 -14 [-279,-260] -269.5 116 2185 23 -13 [-259,-240] -249.5 137 2495 24 -12 [-239,-220] -229.5 153 2930 25 -11 [-219,-200] -209.5 176 3314 26 -10 [-199,-180] -189.5 193 3686 27 -9 [-179,-160] -169.5 252 4322 28 -8 [-159,-140] -149.5 361 6180 29 -7 [-139,-120] -129.5 376 7508 30 -6 [-119,-100] -109.5 376 7520 31 -5 [-99,-80] -89.5 376 7520 32 -4 [-79,-60] -69.5 376 7520 33 -3 [-59,-40] -49.5 376 7520 34 -2 [-39,-20] -29.5 376 7520 35 -1 [-19,0] -9.5 376 7520 36 0 [1,20] 10.5 376 7520 37 1 [21,40] 30.5 376 7520 38 2 [41,60] 50.5 376 7520 39 3 [61,80] 70.5 376 7520 40 4 [81,100] 90.5 376 7520 41 5 [101,120] 110.5 376 7520 42 6 [121,140] 130.5 376 7498 43 7 [141,160] 150.5 351 6058 44 8 [161,180] 170.5 249 4265 45 9 [181,200] 190.5 192 3671 46 10 [201,220] 210.5 175 3291 47 11 [221,240] 230.5 153 2915 48 12 [241,260] 250.5 137 2474 49 13 [261,280] 270.5 115 2168 50 14 [281,300] 290.5 99 1823 51 15 [301,320] 310.5 84 1575 52 16 [321,340] 330.5 74 1404 53 17 [341,360] 350.5 66 1235 54 18 [361,380] 370.5 57 1112 55 19 [381,400] 390.5 53 984 56 20 [401,420] 410.5 45 870 57 21 [421,440] 430.5 38 647 58 22 [441,460] 450.5 27 498 59 23 [461,480] 470.5 24 464 60 24 [481,500] 490.5 22 415 61 25 [501,520] 510.5 19 368 62 26 [521,540] 530.5 18 348 63 27 [541,560] 550.5 15 296 64 28 [561,580] 570.5 14 248 65 29 [581,600] 590.5 11 220 66 30 [601,620] 610.5 11 220 67 31 [621,640] 630.5 11 220 68 32 [641,660] 650.5 11 178 69 33 [661,680] 670.5 7 104 70 34 [681,700] 690.5 4 16 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -689.5 occurrences in window 1 [-699,-680] 11 -669.5 occurrences in window 2 [-679,-660] 12 -649.5 occurrences in window 3 [-659,-640] 13 -629.5 occurrences in window 4 [-639,-620] 14 -609.5 occurrences in window 5 [-619,-600] 15 -589.5 occurrences in window 6 [-599,-580] 16 -569.5 occurrences in window 7 [-579,-560] 17 -549.5 occurrences in window 8 [-559,-540] 18 -529.5 occurrences in window 9 [-539,-520] 19 -509.5 occurrences in window 10 [-519,-500] 20 -489.5 occurrences in window 11 [-499,-480] 21 -469.5 occurrences in window 12 [-479,-460] 22 -449.5 occurrences in window 13 [-459,-440] 23 -429.5 occurrences in window 14 [-439,-420] 24 -409.5 occurrences in window 15 [-419,-400] 25 -389.5 occurrences in window 16 [-399,-380] 26 -369.5 occurrences in window 17 [-379,-360] 27 -349.5 occurrences in window 18 [-359,-340] 28 -329.5 occurrences in window 19 [-339,-320] 29 -309.5 occurrences in window 20 [-319,-300] 30 -289.5 occurrences in window 21 [-299,-280] 31 -269.5 occurrences in window 22 [-279,-260] 32 -249.5 occurrences in window 23 [-259,-240] 33 -229.5 occurrences in window 24 [-239,-220] 34 -209.5 occurrences in window 25 [-219,-200] 35 -189.5 occurrences in window 26 [-199,-180] 36 -169.5 occurrences in window 27 [-179,-160] 37 -149.5 occurrences in window 28 [-159,-140] 38 -129.5 occurrences in window 29 [-139,-120] 39 -109.5 occurrences in window 30 [-119,-100] 40 -89.5 occurrences in window 31 [-99,-80] 41 -69.5 occurrences in window 32 [-79,-60] 42 -49.5 occurrences in window 33 [-59,-40] 43 -29.5 occurrences in window 34 [-39,-20] 44 -9.5 occurrences in window 35 [-19,0] 45 10.5 occurrences in window 36 [1,20] 46 30.5 occurrences in window 37 [21,40] 47 50.5 occurrences in window 38 [41,60] 48 70.5 occurrences in window 39 [61,80] 49 90.5 occurrences in window 40 [81,100] 50 110.5 occurrences in window 41 [101,120] 51 130.5 occurrences in window 42 [121,140] 52 150.5 occurrences in window 43 [141,160] 53 170.5 occurrences in window 44 [161,180] 54 190.5 occurrences in window 45 [181,200] 55 210.5 occurrences in window 46 [201,220] 56 230.5 occurrences in window 47 [221,240] 57 250.5 occurrences in window 48 [241,260] 58 270.5 occurrences in window 49 [261,280] 59 290.5 occurrences in window 50 [281,300] 60 310.5 occurrences in window 51 [301,320] 61 330.5 occurrences in window 52 [321,340] 62 350.5 occurrences in window 53 [341,360] 63 370.5 occurrences in window 54 [361,380] 64 390.5 occurrences in window 55 [381,400] 65 410.5 occurrences in window 56 [401,420] 66 430.5 occurrences in window 57 [421,440] 67 450.5 occurrences in window 58 [441,460] 68 470.5 occurrences in window 59 [461,480] 69 490.5 occurrences in window 60 [481,500] 70 510.5 occurrences in window 61 [501,520] 71 530.5 occurrences in window 62 [521,540] 72 550.5 occurrences in window 63 [541,560] 73 570.5 occurrences in window 64 [561,580] 74 590.5 occurrences in window 65 [581,600] 75 610.5 occurrences in window 66 [601,620] 76 630.5 occurrences in window 67 [621,640] 77 650.5 occurrences in window 68 [641,660] 78 670.5 occurrences in window 69 [661,680] 79 690.5 occurrences in window 70 [681,700]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -689.5 | -669.5 | -649.5 | -629.5 | -609.5 | -589.5 | -569.5 | -549.5 | -529.5 | -509.5 | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 | 510.5 | 530.5 | 550.5 | 570.5 | 590.5 | 610.5 | 630.5 | 650.5 | 670.5 | 690.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 47610 | 761.0 | 69 | 0.0e+00 | 0 | 300 | 1 | 1 | 10 | 20 | 27 | 26 | 23 | 36 | 39 | 47 | 58 | 82 | 74 | 77 | 125 | 174 | 187 | 250 | 263 | 310 | 340 | 425 | 527 | 633 | 805 | 883 | 978 | 1170 | 1712 | 2033 | 2096 | 2069 | 2013 | 2049 | 2061 | 2122 | 2090 | 2136 | 2148 | 2141 | 2099 | 2035 | 2184 | 1667 | 1082 | 970 | 827 | 772 | 600 | 532 | 464 | 327 | 312 | 262 | 216 | 178 | 187 | 117 | 90 | 81 | 75 | 64 | 46 | 31 | 34 | 27 | 26 | 25 | 12 | 6 | 2 |
| g | g | 32460 | 718.0 | 69 | 0.0e+00 | 0 | 300 | 2 | 0 | 4 | 11 | 9 | 12 | 18 | 21 | 30 | 26 | 31 | 40 | 55 | 50 | 75 | 104 | 138 | 136 | 188 | 211 | 252 | 279 | 337 | 405 | 460 | 538 | 670 | 746 | 1210 | 1507 | 1420 | 1475 | 1403 | 1470 | 1508 | 1444 | 1478 | 1468 | 1451 | 1468 | 1391 | 1454 | 1375 | 1128 | 804 | 680 | 559 | 478 | 449 | 322 | 260 | 239 | 195 | 173 | 143 | 152 | 111 | 81 | 49 | 45 | 44 | 35 | 42 | 23 | 22 | 10 | 17 | 12 | 11 | 8 | 0 |
| a | a | 47633 | 710.5 | 69 | 0.0e+00 | 0 | 300 | 3 | 4 | 7 | 22 | 24 | 26 | 26 | 29 | 43 | 62 | 57 | 65 | 84 | 93 | 128 | 178 | 197 | 220 | 280 | 314 | 351 | 441 | 534 | 614 | 719 | 887 | 982 | 1153 | 1717 | 2102 | 2173 | 2096 | 2159 | 2005 | 2119 | 2120 | 2048 | 1962 | 2099 | 2118 | 2132 | 2143 | 2053 | 1618 | 1162 | 962 | 843 | 720 | 583 | 543 | 414 | 390 | 295 | 267 | 222 | 212 | 168 | 115 | 78 | 74 | 59 | 54 | 59 | 60 | 25 | 27 | 31 | 31 | 24 | 10 | 1 |
| c | c | 32106 | 684.6 | 69 | 0.0e+00 | 0 | 300 | 4 | 0 | 8 | 8 | 20 | 16 | 13 | 11 | 24 | 39 | 44 | 41 | 40 | 58 | 77 | 117 | 140 | 151 | 152 | 201 | 250 | 270 | 349 | 403 | 506 | 566 | 616 | 813 | 1101 | 1421 | 1371 | 1417 | 1484 | 1538 | 1392 | 1386 | 1444 | 1494 | 1362 | 1341 | 1439 | 1428 | 1426 | 1198 | 777 | 619 | 622 | 505 | 402 | 334 | 269 | 229 | 227 | 173 | 171 | 114 | 104 | 78 | 59 | 52 | 49 | 35 | 25 | 22 | 14 | 16 | 6 | 12 | 12 | 4 | 1 |
Host name rsat Job started 2025-02-27.145116 Job done 2025-02-27.145117 Seconds 1.03 user 1.03 system 0 cuser 0 ; csystem 0