/var/www/html/rsat/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
 Matrices
	file1	5 matrices	$RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	19	189
		file1	2	19	181
		file1	3	20	165
		file1	4	24	99
		file1	5	10	257
	file2	5 matrices	$RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		19		189
		file2		2		19		181
		file2		3		20		165
		file2		4		24		99
		file2		5		10		257
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m2 dyads_m2 dyads_m2 dyads_m2 1.000 1.000 19 19 19 19 1.0000 1.0000 1.0000 D 0
dyads_m1 dyads_m1 dyads_m1 dyads_m1 1.000 1.000 19 19 19 19 1.0000 1.0000 1.0000 D 0
dyads_m4 dyads_m4 dyads_m4 dyads_m4 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
dyads_m5 dyads_m5 dyads_m5 dyads_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m3 dyads_m3 dyads_m3 dyads_m3 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
dyads_m2 dyads_m3 dyads_m2 dyads_m3 0.849 0.807 19 20 19 20 0.9500 1.0000 0.9500 R -1
dyads_m3 dyads_m2 dyads_m3 dyads_m2 0.849 0.807 20 19 19 20 0.9500 0.9500 1.0000 R 0
dyads_m2 dyads_m1 dyads_m2 dyads_m1 0.830 0.747 19 19 18 20 0.9000 0.9474 0.9474 R 1
dyads_m1 dyads_m2 dyads_m1 dyads_m2 0.830 0.747 19 19 18 20 0.9000 0.9474 0.9474 R 1
dyads_m3 dyads_m4 dyads_m3 dyads_m4 0.828 0.690 20 24 20 24 0.8333 1.0000 0.8333 D -4
dyads_m4 dyads_m3 dyads_m4 dyads_m3 0.828 0.690 24 20 20 24 0.8333 0.8333 1.0000 D 4
dyads_m4 dyads_m1 dyads_m4 dyads_m1 0.824 0.652 24 19 19 24 0.7917 0.7917 1.0000 D 3
dyads_m1 dyads_m4 dyads_m1 dyads_m4 0.824 0.652 19 24 19 24 0.7917 1.0000 0.7917 D -3
dyads_m4 dyads_m2 dyads_m4 dyads_m2 0.819 0.648 24 19 19 24 0.7917 0.7917 1.0000 R 4
dyads_m2 dyads_m4 dyads_m2 dyads_m4 0.819 0.648 19 24 19 24 0.7917 1.0000 0.7917 R -1
dyads_m1 dyads_m3 dyads_m1 dyads_m3 0.724 0.621 19 20 18 21 0.8571 0.9474 0.9000 D 1
dyads_m3 dyads_m1 dyads_m3 dyads_m1 0.724 0.621 20 19 18 21 0.8571 0.9000 0.9474 D -1 
 Host name	rsat
 Job started	2025-02-27.145152
 Job done	2025-02-27.145155
 Seconds	0.26
	user	0.26
	system	0.12
	cuser	2.75
;	csystem	0.42