RSAT - peak-motifs result

Analysis: reg (27/02/2025 14:52)

peak-motifs  -v 1 -title reg -i $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/peak-motifspeak_seq -markov auto -disco oligos,dyads,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW

motif discovery
oligos_6nt_mkv3	Not a single significant pattern	[oligos_6nt_mkv3]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	Not a single significant pattern	[oligos_7nt_mkv4]
positions_7nt	Not a single significant pattern	[positions_7nt]
dyads	dyads_m1 assembly: ataaaaagaaaaata (sig=42.63; e-value=2.3e-43) RC: tatttttctttttat dyads_m2 assembly: ctctttttcttttat (sig=42.63; e-value=2.3e-43) RC: ataaaagaaaaagag dyads_m3 assembly: atagaagaaaaagaat (sig=42.63; e-value=2.3e-43) RC: attctttttcttctat dyads_m4 assembly: taaagagaaagaaaaagaat (sig=42.63; e-value=2.3e-43) RC: attctttttctttctcttta dyads_m5 assembly: ctccaa (sig=11.82; e-value=1.5e-12) RC: ttggag	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   dyads_m1	k-mer sig=42.63; evalue=2.3e-43 aaataAAAAGAAAAataaw WTTATTTTTCTTTTTATTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 62 (16.49%) Max nb of predicted sites per peak: 28  (NZ_CP037899.1:644186-645555) Mean nb of predicted sites per peak: 1.95	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   dyads_m2	k-mer sig=42.63; evalue=2.3e-43 dyctCTTTTTCTTTTattt AAATAAAAGAAAAAGAGRH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 63 (16.76%) Max nb of predicted sites per peak: 4  (NZ_CP037899.1:644186-645555) Mean nb of predicted sites per peak: 1.41	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   dyads_m3	k-mer sig=42.63; evalue=2.3e-43 martaGaAGAAaAAGaAtmr YKATTCTTTTTCTTCTAYTK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 80 (21.28%) Max nb of predicted sites per peak: 12  (NZ_CP037899.1:644186-645555) Mean nb of predicted sites per peak: 1.55	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   dyads_m4	k-mer sig=42.63; evalue=2.3e-43 rakaaaragaaAGAAAAAGAawmw WKWTTCTTTTTCTTTCTYTTTMTY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 63 (16.76%) Max nb of predicted sites per peak: 9  (NZ_CP037899.1:1340747-1342084) Mean nb of predicted sites per peak: 1.97	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   dyads_m5	k-mer sig=11.82; evalue=1.5e-12 tvCTCCAAym KRTTGGAGBA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 81 (21.54%) Max nb of predicted sites per peak: 6  (NZ_CP037899.1:1340747-1342084) Mean nb of predicted sites per peak: 1.37	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title reg -i $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/peak-motifspeak_seq -markov auto -disco oligos,dyads,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW

Warning: Not a single pattern was found in file tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/02/27/peak-motifs.2025-02-27.145114_2025-02-27.145114_qxtruW/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab