; /var/www/html/rsat/bin/matrix-scan-quick -v 1 -i /var/www/html/rsat/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/data/sequences/peak-motifs_test.fasta -m /var/www/html/rsat/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_sig_matrices_split_assembly_1.tab -name dyads_m1 -2str -t 5 -return sites -bgfile /var/www/html/rsat/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt 
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
NZ_CP037899.1:230205-230716	site	dyads_m1	D	206	218	CGGCACGAGTACC	5.41391
NZ_CP037899.1:230205-230716	site	dyads_m1	R	232	244	GCGCAGGCGGATG	7.8638
NZ_CP037899.1:230205-230716	site	dyads_m1	D	296	308	ACGGAGCAGGACA	5.08636
NZ_CP037899.1:230205-230716	site	dyads_m1	D	308	320	AGGCAGAAGGAAG	7.67321
NZ_CP037899.1:230205-230716	site	dyads_m1	D	353	365	CACCACGGGGAGT	5.06391
NZ_CP037899.1:949092-950181	site	dyads_m1	R	195	207	AAGCAAAGGGATT	7.2067
NZ_CP037899.1:949092-950181	site	dyads_m1	D	235	247	TAGCTAGAGGACC	5.03749
NZ_CP037899.1:949092-950181	site	dyads_m1	R	590	602	CAGCAACTGAACA	5.09965
NZ_CP037899.1:949092-950181	site	dyads_m1	R	706	718	CGGCAACTGGACA	8.76169
NZ_CP037899.1:949092-950181	site	dyads_m1	R	195	207	AAGCAAAGGGATT	7.2067
NZ_CP037899.1:949092-950181	site	dyads_m1	D	235	247	TAGCTAGAGGACC	5.03749
NZ_CP037899.1:949092-950181	site	dyads_m1	R	590	602	CAGCAACTGAACA	5.09965
NZ_CP037899.1:949092-950181	site	dyads_m1	R	706	718	CGGCAACTGGACA	8.76169
NZ_CP037899.1:949092-950181	site	dyads_m1	R	195	207	AAGCAAAGGGATT	7.2067
NZ_CP037899.1:949092-950181	site	dyads_m1	D	235	247	TAGCTAGAGGACC	5.03749
NZ_CP037899.1:949092-950181	site	dyads_m1	R	590	602	CAGCAACTGAACA	5.09965
NZ_CP037899.1:949092-950181	site	dyads_m1	R	706	718	CGGCAACTGGACA	8.76169
NZ_CP037899.1:953361-953582	site	dyads_m1	R	115	127	GAACAGACGGACC	5.32821
NZ_CP037899.1:1134619-1134882	site	dyads_m1	D	199	211	AAGCAAGAGGAAA	7.42449
NZ_CP037899.1:1164899-1165284	site	dyads_m1	D	161	173	CTGCAAATGGAGA	7.86804
NZ_CP037899.1:1164899-1165284	site	dyads_m1	D	161	173	CTGCAAATGGAGA	7.86804
NZ_CP037899.1:1640064-1640409	site	dyads_m1	R	231	243	GAGCAGATGGATT	8.17096
NZ_CP037899.1:1681794-1682216	site	dyads_m1	D	209	221	TTGCATGTGGAAG	8.22452
NZ_CP037899.1:2093304-2093628	site	dyads_m1	R	114	126	AGGCAGCTGGACT	8.22104
NZ_CP037899.1:2135546-2135746	site	dyads_m1	D	13	25	TAGCAGTACGATA	5.68194
NZ_CP037899.1:2135546-2135746	site	dyads_m1	D	30	42	CAGCAATAGGAAC	8.4295
NZ_CP037899.1:2135546-2135746	site	dyads_m1	D	71	83	CAGCAGATGGAAT	8.19832
NZ_CP037899.1:2135546-2135746	site	dyads_m1	D	146	158	AGGCAAAAGGATT	7.2067
; Scanned positions 9823
; Job started 2025_03_02.091200
; Job done    2025_03_02.091200
; /var/www/html/rsat/bin/matrix-scan-quick -v 1 -i /var/www/html/rsat/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/data/sequences/peak-motifs_test.fasta -m /var/www/html/rsat/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_sig_matrices_split_assembly_2.tab -name dyads_m2 -2str -t 5 -return sites -bgfile /var/www/html/rsat/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt 
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
NZ_CP037899.1:7618-7818	site	dyads_m2	D	130	149	AAGGAAATATTTTTACGAAA	7.38688
NZ_CP037899.1:230205-230716	site	dyads_m2	R	219	238	GCGGATGAGATAGTCCGGTC	5.10876
NZ_CP037899.1:949092-950181	site	dyads_m2	R	4	23	CAGGAGTTTACAACCCGAAG	8.66949
NZ_CP037899.1:949092-950181	site	dyads_m2	D	298	317	GAGGAACACCGGTGGCGAAG	8.53285
NZ_CP037899.1:949092-950181	site	dyads_m2	D	336	355	CCTGACTCTGATACACGAAA	5.48011
NZ_CP037899.1:949092-950181	site	dyads_m2	R	648	667	CACGACACGAGCTGACGACA	7.1372
NZ_CP037899.1:949092-950181	site	dyads_m2	D	831	850	AGGGAAGCAAGACCGCGAGG	7.70099
NZ_CP037899.1:949092-950181	site	dyads_m2	R	1058	1077	ACGGCTACCTTGTTACGACT	6.28669
NZ_CP037899.1:949092-950181	site	dyads_m2	R	4	23	CAGGAGTTTACAACCCGAAG	8.66949
NZ_CP037899.1:949092-950181	site	dyads_m2	D	298	317	GAGGAACACCGGTGGCGAAG	8.53285
NZ_CP037899.1:949092-950181	site	dyads_m2	D	336	355	CCTGACTCTGATACACGAAA	5.48011
NZ_CP037899.1:949092-950181	site	dyads_m2	R	648	667	CACGACACGAGCTGACGACA	7.1372
NZ_CP037899.1:949092-950181	site	dyads_m2	D	831	850	AGGGAAGCAAGACCGCGAGG	7.70099
NZ_CP037899.1:949092-950181	site	dyads_m2	R	1058	1077	ACGGCTACCTTGTTACGACT	6.28669
NZ_CP037899.1:949092-950181	site	dyads_m2	R	4	23	CAGGAGTTTACAACCCGAAG	8.66949
NZ_CP037899.1:949092-950181	site	dyads_m2	D	298	317	GAGGAACACCGGTGGCGAAG	8.53285
NZ_CP037899.1:949092-950181	site	dyads_m2	D	336	355	CCTGACTCTGATACACGAAA	5.48011
NZ_CP037899.1:949092-950181	site	dyads_m2	R	648	667	CACGACACGAGCTGACGACA	7.1372
NZ_CP037899.1:949092-950181	site	dyads_m2	D	831	850	AGGGAAGCAAGACCGCGAGG	7.70099
NZ_CP037899.1:949092-950181	site	dyads_m2	R	1058	1077	ACGGCTACCTTGTTACGACT	6.28669
NZ_CP037899.1:953361-953582	site	dyads_m2	R	29	48	ATGGACTCTTGGGCTCGATC	7.98177
NZ_CP037899.1:953361-953582	site	dyads_m2	R	75	94	CAGGATGCGATGAGCCGACA	8.72901
NZ_CP037899.1:1134619-1134882	site	dyads_m2	D	99	118	CTGGATTTGAACCAGCGACC	8.21972
NZ_CP037899.1:1164899-1165284	site	dyads_m2	D	335	354	AAGGCCGCAACACACCGATG	5.24888
NZ_CP037899.1:1164899-1165284	site	dyads_m2	D	335	354	AAGGCCGCAACACACCGATG	5.24888
NZ_CP037899.1:1508893-1509246	site	dyads_m2	D	86	105	AGGGAATGTTCGTATCGCTA	5.00589
NZ_CP037899.1:1508893-1509246	site	dyads_m2	R	93	112	TCGGACATAGCGATACGAAC	9.78888
NZ_CP037899.1:1679730-1679930	site	dyads_m2	D	144	163	AGGGAAAGAATATTTCGAGT	7.73406
NZ_CP037899.1:2093304-2093628	site	dyads_m2	R	290	309	GCTGAGGTATTACAACGAGC	5.27715
NZ_CP037899.1:2135546-2135746	site	dyads_m2	D	6	25	GAGAACCTAGCAGTACGATA	5.72926
NZ_CP037899.1:2135546-2135746	site	dyads_m2	D	152	171	AAGGATTTTCCAATCCGATC	7.06063
; Scanned positions 9662
; Job started 2025_03_02.091200
; Job done    2025_03_02.091200
; /var/www/html/rsat/bin/matrix-scan-quick -v 1 -i /var/www/html/rsat/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/data/sequences/peak-motifs_test.fasta -m /var/www/html/rsat/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_sig_matrices_split_assembly_3.tab -name dyads_m3 -2str -t 5 -return sites -bgfile /var/www/html/rsat/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt 
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
NZ_CP037899.1:230205-230716	site	dyads_m3	D	36	65	GCACCGTACGTCTTTGCAAAGACACCACCA	6.29729
NZ_CP037899.1:230205-230716	site	dyads_m3	R	87	116	CCACCGAGCGCTCCCAGGTGGAGTCCAGCA	8.14554
NZ_CP037899.1:230205-230716	site	dyads_m3	D	214	243	GTACCGACCGGACTATCTCATCCGCCTGCG	5.70102
NZ_CP037899.1:949092-950181	site	dyads_m3	R	149	178	TAACCTCCTACACACCCTTTACGCCCAGTA	9.53258
NZ_CP037899.1:949092-950181	site	dyads_m3	D	333	362	GTACCTGACTCTGATACACGAAAGCTAGGG	5.95674
NZ_CP037899.1:949092-950181	site	dyads_m3	R	335	364	TCCCCTAGCTTTCGTGTATCAGAGTCAGGT	5.36592
NZ_CP037899.1:949092-950181	site	dyads_m3	D	379	408	ATACCCCGGTAGTCCTAGCCGTAAACGGTG	5.55966
NZ_CP037899.1:949092-950181	site	dyads_m3	D	569	598	TTACCAGGCCTTGACATGCCGTGTTCAGTT	9.00196
NZ_CP037899.1:949092-950181	site	dyads_m3	R	726	755	TCCCCGTTATACGAGGCAGTCTGTTCAGAG	5.66204
NZ_CP037899.1:949092-950181	site	dyads_m3	R	735	764	CCACCTTCCTCCCCGTTATACGAGGCAGTC	8.38636
NZ_CP037899.1:949092-950181	site	dyads_m3	R	976	1005	CAACCAGCTTTCAGGATGTGACGGGCGGTG	5.19395
NZ_CP037899.1:949092-950181	site	dyads_m3	R	149	178	TAACCTCCTACACACCCTTTACGCCCAGTA	9.53258
NZ_CP037899.1:949092-950181	site	dyads_m3	D	333	362	GTACCTGACTCTGATACACGAAAGCTAGGG	5.95674
NZ_CP037899.1:949092-950181	site	dyads_m3	R	335	364	TCCCCTAGCTTTCGTGTATCAGAGTCAGGT	5.36592
NZ_CP037899.1:949092-950181	site	dyads_m3	D	379	408	ATACCCCGGTAGTCCTAGCCGTAAACGGTG	5.55966
NZ_CP037899.1:949092-950181	site	dyads_m3	D	569	598	TTACCAGGCCTTGACATGCCGTGTTCAGTT	9.00196
NZ_CP037899.1:949092-950181	site	dyads_m3	R	726	755	TCCCCGTTATACGAGGCAGTCTGTTCAGAG	5.66204
NZ_CP037899.1:949092-950181	site	dyads_m3	R	735	764	CCACCTTCCTCCCCGTTATACGAGGCAGTC	8.38636
NZ_CP037899.1:949092-950181	site	dyads_m3	R	976	1005	CAACCAGCTTTCAGGATGTGACGGGCGGTG	5.19395
NZ_CP037899.1:949092-950181	site	dyads_m3	R	149	178	TAACCTCCTACACACCCTTTACGCCCAGTA	9.53258
NZ_CP037899.1:949092-950181	site	dyads_m3	D	333	362	GTACCTGACTCTGATACACGAAAGCTAGGG	5.95674
NZ_CP037899.1:949092-950181	site	dyads_m3	R	335	364	TCCCCTAGCTTTCGTGTATCAGAGTCAGGT	5.36592
NZ_CP037899.1:949092-950181	site	dyads_m3	D	379	408	ATACCCCGGTAGTCCTAGCCGTAAACGGTG	5.55966
NZ_CP037899.1:949092-950181	site	dyads_m3	D	569	598	TTACCAGGCCTTGACATGCCGTGTTCAGTT	9.00196
NZ_CP037899.1:949092-950181	site	dyads_m3	R	726	755	TCCCCGTTATACGAGGCAGTCTGTTCAGAG	5.66204
NZ_CP037899.1:949092-950181	site	dyads_m3	R	735	764	CCACCTTCCTCCCCGTTATACGAGGCAGTC	8.38636
NZ_CP037899.1:949092-950181	site	dyads_m3	R	976	1005	CAACCAGCTTTCAGGATGTGACGGGCGGTG	5.19395
NZ_CP037899.1:953361-953582	site	dyads_m3	R	90	119	GGACCCTTGGGACCTTCTCCAGCCCCAGGA	6.62476
NZ_CP037899.1:953361-953582	site	dyads_m3	R	148	177	GAACTGTCTCACGACGTTCTGAACCCAGCT	5.96764
NZ_CP037899.1:953361-953582	site	dyads_m3	R	188	217	GAACCCCTCAGATCTCCAGCGCCCACAGTG	8.2132
NZ_CP037899.1:1343835-1344167	site	dyads_m3	R	61	90	TAACCATCTTAATATGTGTTATTATCGGAA	5.37313
NZ_CP037899.1:1343835-1344167	site	dyads_m3	D	276	305	ACACGTTTCCATATTACCCCGTTTACAGGA	5.73257
NZ_CP037899.1:1508893-1509246	site	dyads_m3	D	296	325	TAACCTAATATAAATTAGGCAGATCCAGTA	8.46296
NZ_CP037899.1:1530412-1530753	site	dyads_m3	D	111	140	TTACCCAGAATGCCTAACGATGAAACAGCT	8.43956
NZ_CP037899.1:1530412-1530753	site	dyads_m3	R	298	327	TAACCAATACCTTTGTTACGATGCGCAGAA	9.05584
NZ_CP037899.1:1640064-1640409	site	dyads_m3	R	96	125	ACTCCATGGATCTTGTCAGGGTGTACAGAA	6.05009
NZ_CP037899.1:2135546-2135746	site	dyads_m3	D	8	37	GAACCTAGCAGTACGATAATTTCAGCAATA	5.25858
; Scanned positions 9432
; Job started 2025_03_02.091200
; Job done    2025_03_02.091200
