; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab -2str -maxfl 1 -subst 0 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	0
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	3
;

; assembly # 1	seed: gcannngga	1 assembled patterns	length 9
;  alignt	  rev_cpl	score
gcannngga	tccnnntgc	0.27
gcannngga	tccnnntgc	0.27	best consensus

; assembly # 2	seed: ggannnnnnnnnncga	1 assembled patterns	length 16
;         alignt	         rev_cpl	score
ggannnnnnnnnncga	tcgnnnnnnnnnntcc	0.09
ggannnnnnnnnncga	tcgnnnnnnnnnntcc	0.09	best consensus

; assembly # 3	seed: accnnnnnnnnnnnnnnnnnnnncag	1 assembled patterns	length 26
;                   alignt	                   rev_cpl	score
accnnnnnnnnnnnnnnnnnnnncag	ctgnnnnnnnnnnnnnnnnnnnnggt	0.05
accnnnnnnnnnnnnnnnnnnnncag	ctgnnnnnnnnnnnnnnnnnnnnggt	0.05	best consensus
; Host name	rsat
; Job started	2025-03-02.091159
; Job done	2025-03-02.091159
; Seconds	0.13
;	user	0.13
;	system	0.01
;	cuser	0
;	csystem	0
