/var/www/html/rsat/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_footprintDB.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_footprintDB
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_footprintDB
	html_index   	$RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_footprintDB_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_footprintDB_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_footprintDB.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_footprintDB_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_footprintDB.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1.tf
		file1	1	13	28
	file2	13863 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf
		file2		1		17		1.01
		file2		2		7		96
		file2		3		8		5
		file2		4		8		3
		file2		5		8		5
		file2		6		8		1
		file2		7		8		2
		file2		8		8		2
		file2		9		8		6
		file2		10		8		2
		file2		11		8		8
		...	13853 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m1 ZNF527/UN0625.1/JASPAR dyads_m1 ZNF527:UN0625.1:JASPAR 0.712 0.579 13 16 13 16 0.8125 1.0000 0.8125 D -2
dyads_m1 CG3956/sna_FlyReg_FBgn0003448/FlyZincFinger dyads_m1 CG3956:sna_FlyReg_FBgn0003448:FlyZincFinger 0.726 0.559 13 10 10 13 0.7692 0.7692 1.0000 R 0
dyads_m1 ZNF527/UN0625.2/JASPAR dyads_m1 ZNF527:UN0625.2:JASPAR 0.736 0.540 13 13 11 15 0.7333 0.8462 0.8462 D -2
dyads_m1 bHLH80/MA1357.2/JASPAR dyads_m1 bHLH80:MA1357.2:JASPAR 0.718 0.497 13 9 9 13 0.6923 0.6923 1.0000 D 1
dyads_m1 Spdef/M0701_1.02/CISBP dyads_m1 Spdef:M0701_1.02:CISBP 0.749 0.481 13 10 9 14 0.6429 0.6923 0.9000 D 4
dyads_m1 Etv3/M0689_1.02/CISBP dyads_m1 Etv3:M0689_1.02:CISBP 0.744 0.478 13 10 9 14 0.6429 0.6923 0.9000 D 4
dyads_m1 Myc/MYC_MOUSE.H10MO.A|M01219/HOCOMOCO dyads_m1 Myc:MYC_MOUSE.H10MO.A|M01219:HOCOMOCO 0.711 0.474 13 12 10 15 0.6667 0.7692 0.8333 D -2
dyads_m1 IKZF1/MA1508.2/JASPAR dyads_m1 IKZF1:MA1508.2:JASPAR 0.758 0.466 13 8 8 13 0.6154 0.6154 1.0000 D 4
dyads_m1 MSN1/M4387_1.02/CISBP dyads_m1 MSN1:M4387_1.02:CISBP 0.753 0.463 13 8 8 13 0.6154 0.6154 1.0000 R 4
dyads_m1 Nfatc2/MA0152.3/JASPAR dyads_m1 Nfatc2:MA0152.3:JASPAR 0.753 0.463 13 8 8 13 0.6154 0.6154 1.0000 D 5
dyads_m1 Elf5/M0704_1.02/CISBP dyads_m1 Elf5:M0704_1.02:CISBP 0.719 0.462 13 10 9 14 0.6429 0.6923 0.9000 D 4
dyads_m1 Y48G1C.6/M0579_1.02/CISBP dyads_m1 Y48G1C.6:M0579_1.02:CISBP 0.718 0.462 13 10 9 14 0.6429 0.6923 0.9000 R -1
dyads_m1 Mafg/M0308_1.02/CISBP dyads_m1 Mafg:M0308_1.02:CISBP 0.865 0.462 13 10 8 15 0.5333 0.6154 0.8000 D -2
dyads_m1 Gm4881/M0714_1.02/CISBP dyads_m1 Gm4881:M0714_1.02:CISBP 0.718 0.461 13 10 9 14 0.6429 0.6923 0.9000 D 4
dyads_m1 T-CELL/2ypa_AB/3D-footprint dyads_m1 T-CELL:2ypa_AB:3D-footprint 0.747 0.460 13 8 8 13 0.6154 0.6154 1.0000 R 2
dyads_m1 bHLH130/MA1358.2/JASPAR dyads_m1 bHLH130:MA1358.2:JASPAR 0.744 0.458 13 8 8 13 0.6154 0.6154 1.0000 R 2
dyads_m1 Ets1/M0707_1.02/CISBP dyads_m1 Ets1:M0707_1.02:CISBP 0.712 0.458 13 10 9 14 0.6429 0.6923 0.9000 D 4
dyads_m1 Fli1/M0699_1.02/CISBP dyads_m1 Fli1:M0699_1.02:CISBP 0.702 0.451 13 10 9 14 0.6429 0.6923 0.9000 D 4
dyads_m1 CG1856/ttk-PF_SANGER_5_FBgn0003870/FlyZincFinger dyads_m1 CG1856:ttk-PF_SANGER_5_FBgn0003870:FlyZincFinger 0.836 0.450 13 7 7 13 0.5385 0.5385 1.0000 D 6
dyads_m1 ces-1/M0450_1.02/CISBP dyads_m1 ces-1:M0450_1.02:CISBP 0.835 0.449 13 7 7 13 0.5385 0.5385 1.0000 D 3
dyads_m1 Transcription/2ql2_AB/3D-footprint dyads_m1 Transcription:2ql2_AB:3D-footprint 0.730 0.449 13 8 8 13 0.6154 0.6154 1.0000 R 2
dyads_m1 bHLH112/MA0961.2/JASPAR dyads_m1 bHLH112:MA0961.2:JASPAR 0.833 0.448 13 7 7 13 0.5385 0.5385 1.0000 R 3
dyads_m1 OsFBH1/MA2350.1/JASPAR dyads_m1 OsFBH1:MA2350.1:JASPAR 0.833 0.448 13 7 7 13 0.5385 0.5385 1.0000 R 3
dyads_m1 tj/MA2288.1/JASPAR dyads_m1 tj:MA2288.1:JASPAR 0.824 0.440 13 10 8 15 0.5333 0.6154 0.8000 D -2
dyads_m1 Transcription/2ql2_CD/3D-footprint dyads_m1 Transcription:2ql2_CD:3D-footprint 0.707 0.435 13 8 8 13 0.6154 0.6154 1.0000 D 2
dyads_m1 MYC/MA0147.4/JASPAR dyads_m1 MYC:MA0147.4:JASPAR 0.705 0.434 13 8 8 13 0.6154 0.6154 1.0000 R 2
dyads_m1 NEUROD1/MA1109.2/JASPAR dyads_m1 NEUROD1:MA1109.2:JASPAR 0.704 0.433 13 8 8 13 0.6154 0.6154 1.0000 D 2
dyads_m1 ETS1/ETS1_HUMAN.H10MO.C|M01123/HOCOMOCO dyads_m1 ETS1:ETS1_HUMAN.H10MO.C|M01123:HOCOMOCO 0.756 0.432 13 9 8 14 0.5714 0.6154 0.8889 D 5
dyads_m1 ZIK1/UN0591.2/JASPAR dyads_m1 ZIK1:UN0591.2:JASPAR 0.705 0.431 13 16 11 18 0.6111 0.8462 0.6875 D -5
dyads_m1 NAC105/MA2053.2/JASPAR dyads_m1 NAC105:MA2053.2:JASPAR 0.754 0.431 13 9 8 14 0.5714 0.6154 0.8889 D -1
dyads_m1 TAL1/UN0808.1/JASPAR dyads_m1 TAL1:UN0808.1:JASPAR 0.700 0.431 13 8 8 13 0.6154 0.6154 1.0000 D 2
dyads_m1 NRL/NRL_DBD/HumanTF dyads_m1 NRL:NRL_DBD:HumanTF 0.710 0.426 13 11 9 15 0.6000 0.6923 0.8182 R -2
dyads_m1 AT1G74840/MA1397.2/JASPAR dyads_m1 AT1G74840:MA1397.2:JASPAR 0.737 0.421 13 9 8 14 0.5714 0.6154 0.8889 D 5
dyads_m1 ZNF296/UN0175.2/JASPAR dyads_m1 ZNF296:UN0175.2:JASPAR 0.781 0.420 13 7 7 13 0.5385 0.5385 1.0000 D 6
dyads_m1 MYF6/MYF6_HUMAN.H10MO.C|M01345/HOCOMOCO dyads_m1 MYF6:MYF6_HUMAN.H10MO.C|M01345:HOCOMOCO 0.780 0.420 13 7 7 13 0.5385 0.5385 1.0000 D 2
dyads_m1 NEUROG2/MA1642.2/JASPAR dyads_m1 NEUROG2:MA1642.2:JASPAR 0.779 0.419 13 7 7 13 0.5385 0.5385 1.0000 D 3
dyads_m1 PROTEIN/2drp_D/3D-footprint dyads_m1 PROTEIN:2drp_D:3D-footprint 0.838 0.419 13 8 7 14 0.5000 0.5385 0.8750 D 6
dyads_m1 ZmHOX2a(1)/ZmHOX2a/1)(Athamap dyads_m1 ZmHOX2a(1):ZmHOX2a:1)(Athamap 0.777 0.419 13 7 7 13 0.5385 0.5385 1.0000 R 5
dyads_m1 NFATC1/M1521_1.02/CISBP dyads_m1 NFATC1:M1521_1.02:CISBP 0.781 0.416 13 10 8 15 0.5333 0.6154 0.8000 R 5
dyads_m1 TCF12/MA1648.2/JASPAR dyads_m1 TCF12:MA1648.2:JASPAR 0.772 0.416 13 7 7 13 0.5385 0.5385 1.0000 R 2
dyads_m1 TCF3/MA0522.4/JASPAR dyads_m1 TCF3:MA0522.4:JASPAR 0.771 0.415 13 7 7 13 0.5385 0.5385 1.0000 R 2
dyads_m1 Atoh1/MA1467.3/JASPAR dyads_m1 Atoh1:MA1467.3:JASPAR 0.771 0.415 13 7 7 13 0.5385 0.5385 1.0000 D 3
dyads_m1 RFX7/RFX7_methyl_1/HT-SELEX2 dyads_m1 RFX7:RFX7_methyl_1:HT-SELEX2 0.724 0.414 13 9 8 14 0.5714 0.6154 0.8889 R -1
dyads_m1 SMB/UN0380.1/JASPAR dyads_m1 SMB:UN0380.1:JASPAR 0.822 0.411 13 11 8 16 0.5000 0.6154 0.7273 D -3
dyads_m1 NAC007/UN0370.1/JASPAR dyads_m1 NAC007:UN0370.1:JASPAR 0.821 0.411 13 11 8 16 0.5000 0.6154 0.7273 D -3
dyads_m1 NAC101/UN0377.1/JASPAR dyads_m1 NAC101:UN0377.1:JASPAR 0.821 0.411 13 11 8 16 0.5000 0.6154 0.7273 D -3
dyads_m1 ase/M4745_1.02/CISBP dyads_m1 ase:M4745_1.02:CISBP 0.762 0.410 13 7 7 13 0.5385 0.5385 1.0000 D 2
dyads_m1 ase/UN0748.1/JASPAR dyads_m1 ase:UN0748.1:JASPAR 0.762 0.410 13 7 7 13 0.5385 0.5385 1.0000 R 2
dyads_m1 nfatc1/M1523_1.02/CISBP dyads_m1 nfatc1:M1523_1.02:CISBP 0.765 0.408 13 10 8 15 0.5333 0.6154 0.8000 R 5
dyads_m1 l(1)sc/M5064_1.02/CISBP dyads_m1 l(1)sc:M5064_1.02:CISBP 0.756 0.407 13 7 7 13 0.5385 0.5385 1.0000 D 2
dyads_m1 NFATC1/MA0624.1/JASPAR dyads_m1 NFATC1:MA0624.1:JASPAR 0.763 0.407 13 10 8 15 0.5333 0.6154 0.8000 R 5
dyads_m1 NFATC1/M1520_1.02/CISBP dyads_m1 NFATC1:M1520_1.02:CISBP 0.762 0.406 13 10 8 15 0.5333 0.6154 0.8000 R 5
dyads_m1 Zic3/MA0697.3/JASPAR dyads_m1 Zic3:MA0697.3:JASPAR 0.753 0.406 13 7 7 13 0.5385 0.5385 1.0000 D 3
dyads_m1 NFATC3/M1517_1.02/CISBP dyads_m1 NFATC3:M1517_1.02:CISBP 0.758 0.404 13 10 8 15 0.5333 0.6154 0.8000 R 5
dyads_m1 Zic1::Zic2/MA1628.2/JASPAR dyads_m1 Zic1::Zic2:MA1628.2:JASPAR 0.751 0.404 13 7 7 13 0.5385 0.5385 1.0000 D 3
dyads_m1 NFATC3/MA0625.1/JASPAR dyads_m1 NFATC3:MA0625.1:JASPAR 0.758 0.404 13 10 8 15 0.5333 0.6154 0.8000 R 5
dyads_m1 LM195/CN0195.1/JASPAR dyads_m1 LM195:CN0195.1:JASPAR 0.728 0.404 13 15 10 18 0.5556 0.7692 0.6667 R 3
dyads_m1 NAC045/MA2048.2/JASPAR dyads_m1 NAC045:MA2048.2:JASPAR 0.808 0.404 13 8 7 14 0.5000 0.5385 0.8750 D -1
dyads_m1 NFATC3/NFATC3_4/HT-SELEX2 dyads_m1 NFATC3:NFATC3_4:HT-SELEX2 0.756 0.403 13 10 8 15 0.5333 0.6154 0.8000 D 5
dyads_m1 ZNF462/UN0616.2/JASPAR dyads_m1 ZNF462:UN0616.2:JASPAR 0.748 0.403 13 7 7 13 0.5385 0.5385 1.0000 D 3
dyads_m1 BHLH122/MA1739.2/JASPAR dyads_m1 BHLH122:MA1739.2:JASPAR 0.748 0.403 13 7 7 13 0.5385 0.5385 1.0000 R 3
dyads_m1 NAC037/UN0374.1/JASPAR dyads_m1 NAC037:UN0374.1:JASPAR 0.804 0.402 13 11 8 16 0.5000 0.6154 0.7273 D -3
dyads_m1 NFATC4/NFATC4_3/HT-SELEX2 dyads_m1 NFATC4:NFATC4_3:HT-SELEX2 0.754 0.402 13 10 8 15 0.5333 0.6154 0.8000 D 5
dyads_m1 Etv5/M0698_1.02/CISBP dyads_m1 Etv5:M0698_1.02:CISBP 0.703 0.402 13 9 8 14 0.5714 0.6154 0.8889 D 5
dyads_m1 SPIB/MA0081.1/JASPAR dyads_m1 SPIB:MA0081.1:JASPAR 0.746 0.401 13 7 7 13 0.5385 0.5385 1.0000 D 5
dyads_m1 ANAC016/UN0342.1/JASPAR dyads_m1 ANAC016:UN0342.1:JASPAR 0.801 0.401 13 11 8 16 0.5000 0.6154 0.7273 D -3 
 Host name	rsat
 Job started	2025-03-02.091220
 Job done	2025-03-02.091226
 Seconds	5.61
	user	5.61
	system	0.14
	cuser	0.47
;	csystem	0.07