One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_vs_db_footprintDB
One-to-n matrix alignment; reference matrix: dyads_m1_shift5 ; 1 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m1_shift5 (dyads_m1) |
 |
|
|
; dyads_m1; m=0 (reference); ncol1=13; shift=5; ncol=18; -----mrGCArvwGGAyw
; Alignment reference
a 0 0 0 0 0 8 16 1 0 25 17 10 10 0 3 28 5 11
c 0 0 0 0 0 12 2 1 27 0 2 8 2 1 0 0 13 6
g 0 0 0 0 0 3 7 26 1 0 8 8 4 27 24 0 3 3
t 0 0 0 0 0 5 3 0 0 3 1 2 12 0 1 0 7 8
|