RSAT - compare-matrices result

Analysis: result (02/03/2025 09:12)

Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.091145_2025-03-02.091145_IYXNXa/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_footprintDB

Input files

Type	File
file1	peak-motifs_dyads_m3.tf
file2	../../../../../../../../../motif_databases/footprintDB/footprintDB.motif.tf

Output files

Type	File
match_table_txt	peak-motifs_dyads_m3_vs_db_footprintDB.tab
match_table_html	peak-motifs_dyads_m3_vs_db_footprintDB.html
alignments_1ton	peak-motifs_dyads_m3_vs_db_footprintDB_alignments_1ton.tab
alignments_1ton_html	peak-motifs_dyads_m3_vs_db_footprintDB_alignments_1ton.html

Directories

Type	Directory
output	.
aligned_logos	peak-motifs_dyads_m3_vs_db_footprintDB_aligned_logos