RSAT - peak-motifs result

Analysis: reg (02/03/2025 09:44)

peak-motifs  -v 1 -title reg -i $RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.094415_2025-03-02.094415_kwNFS0/peak-motifspeak_seq -markov auto -disco oligos,dyads,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.094415_2025-03-02.094415_kwNFS0

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: aaagaa (sig=0.16; e-value=0.69) RC: ttcttt oligos_6nt_mkv2_m2 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m3 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m4 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: cggcaac (sig=0.63; e-value=0.23) RC: gttgccg oligos_7nt_mkv2_m2 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m3 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m4 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]
dyads	dyads_m1 assembly: gcannngga (sig=0.27; e-value=0.54) RC: tccnnntgc dyads_m2 assembly: ggannnnnnnnnncga (sig=0.09; e-value=0.81) RC: tcgnnnnnnnnnntcc dyads_m3 assembly: accnnnnnnnnnnnnnnnnnnnncag (sig=0.05; e-value=0.89) RC: ctgnnnnnnnnnnnnnnnnnnnnggt dyads_m4 : (sig=; e-value=1) RC: dyads_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=0.16; evalue=0.69 kaAAAGAArw WYTTCTTTTM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (4.35%) Max nb of predicted sites per peak: 1  (NZ_CP037899.1:7618-7818) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_7nt_mkv2_m1	k-mer sig=0.63; evalue=0.23 kbCGGCAACbb VVGTTGCCGVM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (21.74%) Max nb of predicted sites per peak: 18  (NZ_CP037899.1:949092-950181) Mean nb of predicted sites per peak: 5.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   dyads_m1	k-mer sig=0.27; evalue=0.54 crGCArvwGGAcm KGTCCWBYTGCYG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (26.09%) Max nb of predicted sites per peak: 12  (NZ_CP037899.1:949092-950181) Mean nb of predicted sites per peak: 3.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   dyads_m2	k-mer sig=0.09; evalue=0.81 mmGGAckcaasrysvCGAmr YKTCGBSRYSTTGMGTCCKK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (21.74%) Max nb of predicted sites per peak: 21  (NZ_CP037899.1:949092-950181) Mean nb of predicted sites per peak: 5.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   dyads_m3	k-mer sig=0.05; evalue=0.89 khaCCtksctyysmbdyrysrbrgsCaGkr YMCTGSCYVYSRYRHVKSRRAGSMAGGTDM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (21.74%) Max nb of predicted sites per peak: 24  (NZ_CP037899.1:949092-950181) Mean nb of predicted sites per peak: 5.80	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title reg -i $RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.094415_2025-03-02.094415_kwNFS0/peak-motifspeak_seq -markov auto -disco oligos,dyads,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/03/02/peak-motifs.2025-03-02.094415_2025-03-02.094415_kwNFS0

Warning: Not a single pattern was found in file tmp/www-data/2025/03/02/peak-motifs.2025-03-02.094415_2025-03-02.094415_kwNFS0/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/03/02/peak-motifs.2025-03-02.094415_2025-03-02.094415_kwNFS0/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab