One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/03/15/compare-matrices_2025-03-15.183841_2Q1EjC/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/ENCODE/encode-motifs_Kheradpour_Kellis_NAR2013.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2025/03/15/compare-matrices_2025-03-15.183841_2Q1EjC/compare-matrices.tab

One-to-n matrix alignment; reference matrix: cluster_7_shift4 ; 15 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_7_shift4 (cluster_7)														; cluster_7; m=0 (reference); ncol1=11; shift=4; ncol=15; ----gaCACTGCAvm ; Alignment reference a 0 0 0 0 139 309 2 662 1 134 19 3 563 202 241 c 0 0 0 0 148 113 686 6 668 3 102 690 22 262 311 g 0 0 0 0 295 136 6 24 10 58 573 2 107 223 20 t 0 0 0 0 113 137 1 3 16 500 1 0 3 8 123
ZBTB3_1_shift1 (ZBTB3_1)		0.905	0.585	6.886	0.940	0.961	1	11	16	1	1	6.000	1	; cluster_7 versus ZBTB3_1; m=1/14; ncol2=17; w=-3; offset=-3; strand=D; shift=1; score= 6; -rabbsCACTGCAyt ; cor=0.905; Ncor=0.585; logoDP=6.886; NsEucl=0.940; NSW=0.961; rcor=1; rNcor=11; rlogoDP=16; rNsEucl=1; rNSW=1; rank_mean=6.000; match_rank=1 a 0 401190 430224 172575 150971 133421 42798 890788 1887 11633 3597 2946 908487 76237 144926 c 0 144405 168519 268499 297110 282842 941105 2551 951368 2218 3728 903520 57072 329864 162981 g 0 268531 221247 274136 290868 434718 1785 103316 43722 2269 984819 72457 18256 228896 177370 t 0 185874 180011 284789 261051 149019 14312 3345 3023 983880 7856 21077 16185 365003 514722
SOX8_2_rc_shift4 (SOX8_2_rc)		0.801	0.551	4.424	0.897	0.883	14	39	96	34	77	52.000	23	; cluster_7 versus SOX8_2_rc; m=2/14; ncol2=16; w=0; offset=0; strand=R; shift=4; score= 52; ----AACACTGCAyA ; cor=0.801; Ncor=0.551; logoDP=4.424; NsEucl=0.897; NSW=0.883; rcor=14; rNcor=39; rlogoDP=96; rNsEucl=34; rNSW=77; rank_mean=52.000; match_rank=23 a 0 0 0 0 991379 997831 0 997831 4320 0 4310 167608 997831 73413 997831 c 0 0 0 0 0 0 1e+06 2169 993520 0 4310 698682 0 591269 2169 g 0 0 0 0 8621 0 0 0 0 0 991380 77213 0 13889 0 t 0 0 0 0 0 2169 0 0 2160 1e+06 0 56497 2169 321429 0
KLF12_1_rc_shift4 (KLF12_1_rc)		0.839	0.534	0.300	0.906	0.938	4	67	176	18	3	53.600	25	; cluster_7 versus KLF12_1_rc; m=3/14; ncol2=7; w=0; offset=0; strand=R; shift=4; score= 53.6; ----cccACtG---- ; cor=0.839; Ncor=0.534; logoDP=0.300; NsEucl=0.906; NSW=0.938; rcor=4; rNcor=67; rlogoDP=176; rNsEucl=18; rNSW=3; rank_mean=53.600; match_rank=25 a 0 0 0 0 181818 181818 90909 818182 0 181818 90909 0 0 0 0 c 0 0 0 0 545455 636364 636364 0 818182 0 0 0 0 0 0 g 0 0 0 0 90909 90909 90909 181818 90909 181818 727273 0 0 0 0 t 0 0 0 0 181818 90909 181818 0 90909 636364 181818 0 0 0 0
GFI1B_1_shift1 (GFI1B_1)		0.783	0.503	4.668	0.897	0.905	27	106	81	33	24	54.200	26	; cluster_7 versus GFI1B_1; m=4/14; ncol2=12; w=-3; offset=-3; strand=D; shift=1; score= 54.2; -yAAA-CAstGCw-- ; cor=0.783; Ncor=0.503; logoDP=4.668; NsEucl=0.897; NSW=0.905; rcor=27; rNcor=106; rlogoDP=81; rNsEucl=33; rNSW=24; rank_mean=54.200; match_rank=26 a 0 46512 901639 1e+06 1e+06 0 0 953125 62500 156250 93750 83333 473684 0 0 c 0 302326 81967 0 0 0 1e+06 15625 656250 31250 93750 816667 70175 0 0 g 0 23256 0 0 0 0 0 0 281250 234375 703125 16667 122807 0 0 t 0 627907 16393 0 0 0 0 31250 0 578125 109375 83333 333333 0 0
ZNF143_disc2_shift7 (ZNF143_disc2)		0.742	0.457	5.906	0.874	0.874	82	142	35	121	112	98.400		; cluster_7 versus ZNF143_disc2; m=5/14; ncol2=10; w=0; offset=3; strand=D; shift=7; score= 98.4; -------ACTACAwy ; cor=0.742; Ncor=0.457; logoDP=5.906; NsEucl=0.874; NSW=0.874; rcor=82; rNcor=142; rlogoDP=35; rNsEucl=121; rNSW=112; rank_mean=98.400; match_rank= a 0 0 0 0 0 0 0 991770 0 0 888889 0 913581 650206 90535 c 0 0 0 0 0 0 0 8230 1e+06 86420 41152 987654 20576 53498 333333 g 0 0 0 0 0 0 0 0 0 4115 41152 0 61728 32922 131687 t 0 0 0 0 0 0 0 0 0 909465 28807 12346 4115 263374 444444
FOXB1_1_shift0 (FOXB1_1)		0.717	0.478	4.889	0.889	0.877	142	129	69	60	104	100.800		; cluster_7 versus FOXB1_1; m=6/14; ncol2=14; w=-4; offset=-4; strand=D; shift=0; score= 100.8; gAATGACACrGCga- ; cor=0.717; Ncor=0.478; logoDP=4.889; NsEucl=0.889; NSW=0.877; rcor=142; rNcor=129; rlogoDP=69; rNsEucl=60; rNSW=104; rank_mean=100.800; match_rank= a 132163 761035 917688 0 30440 951785 21851 971223 5755 507982 107561 121495 99718 565217 0 c 81331 80670 7005 16169 0 21429 876607 3597 971224 68215 19169 704440 57385 198068 0 g 650646 95890 31524 6219 957159 17857 0 25180 15827 374456 842386 106308 663217 140097 0 t 135860 62405 43783 977612 12401 8929 101542 0 7194 49347 30884 67757 179680 96618 0
SMARC_disc2_shift7 (SMARC_disc2)		0.730	0.449	5.875	0.869	0.864	109	148	38	138	132	113.000		; cluster_7 versus SMARC_disc2; m=7/14; ncol2=10; w=0; offset=3; strand=D; shift=7; score= 113; -------ACTACAAy ; cor=0.730; Ncor=0.449; logoDP=5.875; NsEucl=0.869; NSW=0.864; rcor=109; rNcor=148; rlogoDP=38; rNsEucl=138; rNSW=132; rank_mean=113.000; match_rank= a 0 0 0 0 0 0 0 1e+06 27027 0 1e+06 0 905405 716216 162162 c 0 0 0 0 0 0 0 0 972973 94595 0 1e+06 0 54054 445946 g 0 0 0 0 0 0 0 0 0 0 0 0 67568 67568 94595 t 0 0 0 0 0 0 0 0 0 905405 0 0 27027 162162 297297
SIX5_disc1_rc_shift7 (SIX5_disc1_rc)		0.750	0.461	0.476	0.875	0.876	65	136	169	116	106	118.400		; cluster_7 versus SIX5_disc1_rc; m=8/14; ncol2=10; w=0; offset=3; strand=R; shift=7; score= 118.4; -------ACTACAwy ; cor=0.750; Ncor=0.461; logoDP=0.476; NsEucl=0.875; NSW=0.876; rcor=65; rNcor=136; rlogoDP=169; rNsEucl=116; rNSW=106; rank_mean=118.400; match_rank= a 0 0 0 0 0 0 0 987234 0 0 910638 0 940425 578724 127660 c 0 0 0 0 0 0 0 12766 1e+06 51064 29787 1e+06 12766 85106 344681 g 0 0 0 0 0 0 0 0 0 4255 21277 0 46809 85106 72340 t 0 0 0 0 0 0 0 0 0 944681 38298 0 0 251064 455319
SOX10_8_rc_shift4 (SOX10_8_rc)		0.710	0.521	3.572	0.885	0.856	155	88	135	79	141	119.600		; cluster_7 versus SOX10_8_rc; m=9/14; ncol2=15; w=0; offset=0; strand=R; shift=4; score= 119.6; ----A-CACTGmA-T ; cor=0.710; Ncor=0.521; logoDP=3.572; NsEucl=0.885; NSW=0.856; rcor=155; rNcor=88; rlogoDP=135; rNsEucl=79; rNSW=141; rank_mean=119.600; match_rank= a 0 0 0 0 911932 0 0 996895 121597 0 0 446539 995864 0 0 c 0 0 0 0 7576 0 998963 1035 873866 1037 0 312967 1034 0 37962 g 0 0 0 0 78598 0 1037 1035 0 0 1e+06 129022 0 0 0 t 0 0 0 0 1894 0 0 1035 4537 998963 0 111472 3102 0 962038
SOX10_3_rc_shift4 (SOX10_3_rc)		0.704	0.516	4.255	0.881	0.845	166	93	104	96	157	123.200		; cluster_7 versus SOX10_3_rc; m=10/14; ncol2=15; w=0; offset=0; strand=R; shift=4; score= 123.2; ----A-CACTGmAAT ; cor=0.704; Ncor=0.516; logoDP=4.255; NsEucl=0.881; NSW=0.845; rcor=166; rNcor=93; rlogoDP=104; rNsEucl=96; rNSW=157; rank_mean=123.200; match_rank= a 0 0 0 0 995025 0 0 998440 936 0 165026 311972 829973 999531 0 c 0 0 0 0 0 0 999531 312 998752 0 313 579869 169558 0 0 g 0 0 0 0 4198 0 0 780 0 0 834348 74086 0 469 469 t 0 0 0 0 777 0 469 468 312 1e+06 313 34073 469 0 999531
SOX4_2_rc_shift4 (SOX4_2_rc)		0.736	0.506	0.536	0.881	0.843	97	103	166	98	159	124.600		; cluster_7 versus SOX4_2_rc; m=11/14; ncol2=16; w=0; offset=0; strand=R; shift=4; score= 124.6; ----AACACTGcAAT ; cor=0.736; Ncor=0.506; logoDP=0.536; NsEucl=0.881; NSW=0.843; rcor=97; rNcor=103; rlogoDP=166; rNsEucl=98; rNSW=159; rank_mean=124.600; match_rank= a 0 0 0 0 992740 998175 0 992740 43706 0 0 232813 980287 998175 1815 c 0 0 0 0 1815 0 998175 7260 956294 1825 0 621875 19713 1825 5445 g 0 0 0 0 1815 1825 0 0 0 0 1e+06 60937 0 0 0 t 0 0 0 0 3630 0 1825 0 0 998175 0 84375 0 0 992740
SOX10_9_rc_shift4 (SOX10_9_rc)		0.715	0.524	3.497	0.879	0.839	147	85	137	102	168	127.800		; cluster_7 versus SOX10_9_rc; m=12/14; ncol2=15; w=0; offset=0; strand=R; shift=4; score= 127.8; ----ATCACTGcA-T ; cor=0.715; Ncor=0.524; logoDP=3.497; NsEucl=0.879; NSW=0.839; rcor=147; rNcor=85; rlogoDP=137; rNsEucl=102; rNSW=168; rank_mean=127.800; match_rank= a 0 0 0 0 993564 0 0 998299 7442 0 0 240330 991884 0 0 c 0 0 0 0 2710 681 999659 340 992220 341 0 637332 7778 0 0 g 0 0 0 0 2371 341 0 1021 338 341 1e+06 4129 338 0 0 t 0 0 0 0 1355 998978 341 340 0 999318 0 118209 0 0 1e+06
SREBP_known3_shift6 (SREBP_known3)		0.719	0.457	7.018	0.845	0.832	141	141	14	177	173	129.200		; cluster_7 versus SREBP_known3; m=13/14; ncol2=7; w=0; offset=2; strand=D; shift=6; score= 129.2; ------CACsCCA-- ; cor=0.719; Ncor=0.457; logoDP=7.018; NsEucl=0.845; NSW=0.832; rcor=141; rNcor=141; rlogoDP=14; rNsEucl=177; rNSW=173; rank_mean=129.200; match_rank= a 0 0 0 0 0 0 0 1e+06 0 166667 0 0 1e+06 0 0 c 0 0 0 0 0 0 1e+06 0 1e+06 500000 1e+06 833333 0 0 0 g 0 0 0 0 0 0 0 0 0 333333 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 166667 0 0 0
SOX8_4_rc_shift3 (SOX8_4_rc)		0.709	0.459	4.136	0.879	0.838	163	140	112	103	169	137.400		; cluster_7 versus SOX8_4_rc; m=14/14; ncol2=17; w=-1; offset=-1; strand=R; shift=3; score= 137.4; ---rAACACTGmAAT ; cor=0.709; Ncor=0.459; logoDP=4.136; NsEucl=0.879; NSW=0.838; rcor=163; rNcor=140; rlogoDP=112; rNsEucl=103; rNSW=169; rank_mean=137.400; match_rank= a 0 0 0 311660 986158 997487 240 995225 16631 359 109863 314577 880528 999280 593 c 0 0 0 136876 2721 2274 999400 3462 983251 2152 2152 482903 118394 240 9256 g 0 0 0 369722 8163 0 120 597 0 837 886670 105339 359 240 949 t 0 0 0 181742 2958 239 240 716 118 996652 1315 97181 719 240 989202

One-to-n matrix alignment; reference matrix: cluster_1_shift0 ; 4 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_1_shift0 (cluster_1)														; cluster_1; m=0 (reference); ncol1=19; shift=0; ncol=19; AAAAAAAAAAAAAAwwwwa ; Alignment reference a 5276 5393 5928 6364 6295 6533 6509 4910 6131 6478 5786 5205 4900 4839 784 973 696 829 820 c 395 207 281 53 37 21 13 27 8 72 39 67 305 195 30 287 112 312 379 g 128 121 42 35 162 47 30 166 302 30 38 148 303 823 74 50 67 129 147 t 672 750 220 253 211 104 153 1602 264 125 842 1285 1197 848 868 446 881 486 410
HDAC2_disc6_shift0 (HDAC2_disc6)		0.783	0.618	5.843	0.920	0.903	26	6	39	3	26	20.000	2	; cluster_1 versus HDAC2_disc6; m=1/3; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 20; arrrrAArAAArrmA---- ; cor=0.783; Ncor=0.618; logoDP=5.843; NsEucl=0.920; NSW=0.903; rcor=26; rNcor=6; rlogoDP=39; rNsEucl=3; rNSW=26; rank_mean=20.000; match_rank=2 a 533333 600000 383333 566666 550000 966666 750000 316667 750000 883333 766667 533333 450000 616666 800000 0 0 0 0 c 116667 0 0 0 0 16667 16667 0 116667 66667 0 16667 0 316667 0 0 0 0 0 g 183333 300000 500000 416667 450000 0 233333 616666 133333 50000 200000 300000 416667 0 16667 0 0 0 0 t 166667 100000 116667 16667 0 16667 0 66667 0 0 33333 150000 133333 66667 183333 0 0 0 0
ZNF35_1_shift1 (ZNF35_1)		0.724	0.571	4.386	0.913	0.885	126	19	98	7	72	64.400	38	; cluster_1 versus ZNF35_1; m=2/3; ncol2=15; w=0; offset=1; strand=D; shift=1; score= 64.4; -wayAAwhAAmAAkar--- ; cor=0.724; Ncor=0.571; logoDP=4.386; NsEucl=0.913; NSW=0.885; rcor=126; rNcor=19; rlogoDP=98; rNsEucl=7; rNSW=72; rank_mean=64.400; match_rank=38 a 0 363104 419707 164481 715575 883836 558797 267037 939762 897072 305904 880940 710082 246712 429749 339643 0 0 0 c 0 182807 133742 418263 117639 26985 151280 403488 13627 9878 516040 27958 52464 125155 181755 97216 0 0 0 g 0 145232 222546 52397 64914 32584 33120 26746 34579 35642 55311 48350 40250 318627 176892 355250 0 0 0 t 0 308856 224005 364858 101872 56596 256803 302729 12032 57408 122746 42752 197204 309506 211603 207891 0 0 0
FOXC1_3_shift0 (FOXC1_3)		0.738	0.505	7.772	0.900	0.870	96	104	9	28	121	71.600	50	; cluster_1 versus FOXC1_3; m=3/3; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 71.6; AarTAAAyAAAcA------ ; cor=0.738; Ncor=0.505; logoDP=7.772; NsEucl=0.900; NSW=0.870; rcor=96; rNcor=104; rlogoDP=9; rNsEucl=28; rNSW=121; rank_mean=71.600; match_rank=50 a 734538 574350 409533 188141 890192 953105 958485 4129 983975 946851 885548 109282 847826 0 0 0 0 0 0 c 48358 109879 30731 81061 99938 17503 2657 363730 12956 17388 25161 633312 45828 0 0 0 0 0 0 g 158310 85962 495453 8757 7711 10568 36533 2753 3069 17060 32832 44766 64630 0 0 0 0 0 0 t 58794 229809 64283 722041 2159 18824 2325 629388 0 18701 56459 212640 41716 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: cluster_2_shift5 ; 30 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_2_shift5 (cluster_2)														; cluster_2; m=0 (reference); ncol1=11; shift=5; ncol=16; -----aaAArAATtaw ; Alignment reference a 0 0 0 0 0 839 741 1443 1379 976 1380 1373 258 246 784 714 c 0 0 0 0 0 270 247 7 2 6 8 22 8 9 183 109 g 0 0 0 0 0 203 339 17 14 473 74 5 9 242 194 197 t 0 0 0 0 0 162 147 7 79 19 12 74 1199 977 313 454
LHX3_2_shift5 (LHX3_2)		0.786	0.665	4.947	0.910	0.911	24	3	66	12	18	24.600	3	; cluster_2 versus LHX3_2; m=1/29; ncol2=13; w=0; offset=0; strand=D; shift=5; score= 24.6; -----wAA--AATTAw ; cor=0.786; Ncor=0.665; logoDP=4.947; NsEucl=0.910; NSW=0.911; rcor=24; rNcor=3; rlogoDP=66; rNsEucl=12; rNSW=18; rank_mean=24.600; match_rank=3 a 0 0 0 0 0 450000 800000 950000 0 0 950000 1e+06 100000 0 800000 450000 c 0 0 0 0 0 0 100000 0 0 0 0 0 100000 50000 50000 0 g 0 0 0 0 0 150000 100000 0 0 0 0 0 0 0 0 150000 t 0 0 0 0 0 400000 0 50000 0 0 50000 0 800000 950000 150000 400000
PAX4_2_shift6 (PAX4_2)		0.832	0.694	3.580	0.923	0.940	6	1	134	2	2	29.000	5	; cluster_2 versus PAX4_2; m=2/29; ncol2=11; w=0; offset=1; strand=D; shift=6; score= 29; ------rAmwAATTav ; cor=0.832; Ncor=0.694; logoDP=3.580; NsEucl=0.923; NSW=0.940; rcor=6; rNcor=1; rlogoDP=134; rNsEucl=2; rNSW=2; rank_mean=29.000; match_rank=5 a 0 0 0 0 0 0 266667 722222 550000 400000 750000 1e+06 100000 100000 550000 250000 c 0 0 0 0 0 0 133333 55556 250000 0 100000 0 0 50000 50000 450000 g 0 0 0 0 0 0 466667 222222 50000 100000 100000 0 0 50000 200000 250000 t 0 0 0 0 0 0 133333 0 150000 500000 50000 0 900000 800000 200000 50000
ZNF384_1_shift6 (ZNF384_1)		0.765	0.626	6.674	0.893	0.896	41	4	22	43	38	29.600	6	; cluster_2 versus ZNF384_1; m=3/29; ncol2=9; w=0; offset=1; strand=D; shift=6; score= 29.6; ------sAAAAAvyc- ; cor=0.765; Ncor=0.626; logoDP=6.674; NsEucl=0.893; NSW=0.896; rcor=41; rNcor=4; rlogoDP=22; rNsEucl=43; rNSW=38; rank_mean=29.600; match_rank=6 a 0 0 0 0 0 0 0 1e+06 1e+06 1e+06 1e+06 1e+06 384615 128205 230769 0 c 0 0 0 0 0 0 435897 0 0 0 0 0 256410 333333 384615 0 g 0 0 0 0 0 0 564103 0 0 0 0 0 333333 153846 179487 0 t 0 0 0 0 0 0 0 0 0 0 0 0 25641 384615 205128 0
SOX17_3_shift4 (SOX17_3)		0.781	0.573	4.373	0.915	0.921	29	17	99	5	7	31.400	7	; cluster_2 versus SOX17_3; m=4/29; ncol2=15; w=-1; offset=-1; strand=D; shift=4; score= 31.4; ----mwaAACAATTrA ; cor=0.781; Ncor=0.573; logoDP=4.373; NsEucl=0.915; NSW=0.921; rcor=29; rNcor=17; rlogoDP=99; rNsEucl=5; rNSW=7; rank_mean=31.400; match_rank=7 a 0 0 0 0 384811 309402 481080 767683 721907 15843 946041 968744 19919 184775 391691 686419 c 0 0 0 0 284700 148547 63522 76339 20423 855728 14076 3602 12714 20594 169606 86126 g 0 0 0 0 175936 182807 236227 78689 21208 37803 6202 10784 5072 79338 345342 77592 t 0 0 0 0 154553 359244 219171 77290 236461 90627 33681 16871 962296 715293 93361 149862
SOX13_1_shift2 (SOX13_1)		0.765	0.526	5.011	0.911	0.912	43	79	62	11	16	42.200	13	; cluster_2 versus SOX13_1; m=5/29; ncol2=16; w=-3; offset=-3; strand=D; shift=2; score= 42.2; --wtwrgAACAATwww ; cor=0.765; Ncor=0.526; logoDP=5.011; NsEucl=0.911; NSW=0.912; rcor=43; rNcor=79; rlogoDP=62; rNsEucl=11; rNSW=16; rank_mean=42.200; match_rank=13 a 0 0 269275 188801 368195 497992 130964 825318 959293 19733 943830 949658 38214 465769 416082 356556 c 0 0 121320 239798 140376 105708 90292 23531 7648 898543 5894 10125 25063 16866 86340 103268 g 0 0 165706 175798 162749 282795 620010 125342 10682 14756 14484 29732 6015 79467 115778 179331 t 0 0 443700 395603 328680 113505 158734 25809 22377 66968 35792 10485 930708 437898 381801 360845
SOX5_3_shift2 (SOX5_3)		0.757	0.521	5.470	0.908	0.907	52	87	54	16	21	46.000	16	; cluster_2 versus SOX5_3; m=6/29; ncol2=16; w=-3; offset=-3; strand=D; shift=2; score= 46; --wwdrgAACAATwaa ; cor=0.757; Ncor=0.521; logoDP=5.470; NsEucl=0.908; NSW=0.907; rcor=52; rNcor=87; rlogoDP=54; rNsEucl=16; rNSW=21; rank_mean=46.000; match_rank=16 a 0 0 305368 257879 257635 446808 148292 827592 976345 5230 973417 974095 30624 491667 451773 434242 c 0 0 133033 197076 122462 93619 91229 26174 3817 937364 3014 4350 11927 15453 100304 114442 g 0 0 173233 146872 256979 289963 632311 130622 5452 8904 6136 11425 3795 85481 244084 217049 t 0 0 388366 398174 362924 169610 128169 15612 14386 48502 17433 10130 953653 407399 203838 234267
NKX6-2_1_shift5 (NKX6-2_1)		0.744	0.682	3.809	0.912	0.916	78	2	129	8	14	46.200	17	; cluster_2 versus NKX6-2_1; m=7/29; ncol2=12; w=0; offset=0; strand=D; shift=5; score= 46.2; -----rwrd-AAwTab ; cor=0.744; Ncor=0.682; logoDP=3.809; NsEucl=0.912; NSW=0.916; rcor=78; rNcor=2; rlogoDP=129; rNsEucl=8; rNSW=14; rank_mean=46.200; match_rank=17 a 0 0 0 0 0 285714 428571 571429 428571 0 1e+06 1e+06 428571 142857 571429 142857 c 0 0 0 0 0 142857 142857 0 0 0 0 0 0 0 142857 285714 g 0 0 0 0 0 428571 0 285714 285714 0 0 0 0 142857 142857 285714 t 0 0 0 0 0 142857 428571 142857 285714 0 0 0 571429 714286 142857 285714
SOX18_1_rc_shift1 (SOX18_1_rc)		0.790	0.543	0.531	0.918	0.926	20	50	167	4	4	49.000	18	; cluster_2 versus SOX18_1_rc; m=8/29; ncol2=16; w=-4; offset=-4; strand=R; shift=1; score= 49; -wktkarAACAATdrw ; cor=0.790; Ncor=0.543; logoDP=0.531; NsEucl=0.918; NSW=0.926; rcor=20; rNcor=50; rlogoDP=167; rNsEucl=4; rNSW=4; rank_mean=49.000; match_rank=18 a 0 260874 207369 246983 181766 549985 262131 763854 924459 20176 966753 957359 58809 278290 301571 393358 c 0 148396 139104 175575 167160 75255 245065 51283 15312 844558 9748 8364 8324 23094 213820 115062 g 0 238643 278435 100035 276156 143849 284484 77857 6877 25833 4244 14069 6960 286682 330371 126080 t 0 352086 375092 477406 374917 230912 208320 107006 53352 109433 19255 20208 925907 411934 154238 365499
SOX12_1_rc_shift1 (SOX12_1_rc)		0.791	0.527	0.367	0.908	0.916	19	74	173	14	13	58.600	33	; cluster_2 versus SOX12_1_rc; m=9/29; ncol2=14; w=-4; offset=-4; strand=R; shift=1; score= 58.6; -kwtkagAACAATwa- ; cor=0.791; Ncor=0.527; logoDP=0.367; NsEucl=0.908; NSW=0.916; rcor=19; rNcor=74; rlogoDP=173; rNsEucl=14; rNSW=13; rank_mean=58.600; match_rank=33 a 0 249246 337459 219261 247648 660606 172976 877615 965849 13616 968159 966772 140710 320722 533982 0 c 0 197403 91821 105361 202704 70431 175089 23058 5622 926393 7268 10273 9822 25428 113860 0 g 0 280517 149322 109529 259108 110477 424131 63776 4368 12476 2662 12156 4610 237036 227558 0 t 0 272834 421399 565848 290539 158486 227803 35551 24161 47515 21911 10799 844859 416814 124600 0
ZNF35_1_shift0 (ZNF35_1)		0.778	0.486	3.498	0.912	0.923	31	117	136	9	6	59.800	34	; cluster_2 versus ZNF35_1; m=10/29; ncol2=15; w=-5; offset=-5; strand=D; shift=0; score= 59.8; wayAAwhAAmAAkar- ; cor=0.778; Ncor=0.486; logoDP=3.498; NsEucl=0.912; NSW=0.923; rcor=31; rNcor=117; rlogoDP=136; rNsEucl=9; rNSW=6; rank_mean=59.800; match_rank=34 a 363104 419707 164481 715575 883836 558797 267037 939762 897072 305904 880940 710082 246712 429749 339643 0 c 182807 133742 418263 117639 26985 151280 403488 13627 9878 516040 27958 52464 125155 181755 97216 0 g 145232 222546 52397 64914 32584 33120 26746 34579 35642 55311 48350 40250 318627 176892 355250 0 t 308856 224005 364858 101872 56596 256803 302729 12032 57408 122746 42752 197204 309506 211603 207891 0
SOX8_1_rc_shift2 (SOX8_1_rc)		0.773	0.500	2.181	0.915	0.920	35	108	148	6	8	61.000	35	; cluster_2 versus SOX8_1_rc; m=11/29; ncol2=17; w=-3; offset=-3; strand=R; shift=2; score= 61; --twmwkAACAATwra ; cor=0.773; Ncor=0.500; logoDP=2.181; NsEucl=0.915; NSW=0.920; rcor=35; rNcor=108; rlogoDP=148; rNsEucl=6; rNSW=8; rank_mean=61.000; match_rank=35 a 0 0 241867 366344 360857 426374 234610 753435 874058 5635 964244 960817 36291 449726 325544 598267 c 0 0 153551 164403 296366 147771 82152 59611 7797 806085 9294 4166 11975 35110 193904 125500 g 0 0 128717 152457 137656 174578 432576 99671 7155 38995 5554 26630 6713 130540 325860 86232 t 0 0 475864 316796 205121 251277 250662 87283 110990 149285 20908 8386 945021 384624 154692 190001
SOX15_1_shift2 (SOX15_1)		0.740	0.479	4.808	0.907	0.906	89	128	73	17	23	66.000	40	; cluster_2 versus SOX15_1; m=12/29; ncol2=17; w=-3; offset=-3; strand=D; shift=2; score= 66; --wrkwgAACAATwrr ; cor=0.740; Ncor=0.479; logoDP=4.808; NsEucl=0.907; NSW=0.906; rcor=89; rNcor=128; rlogoDP=73; rNsEucl=17; rNSW=23; rank_mean=66.000; match_rank=40 a 0 0 287334 278683 196938 343773 217683 795638 932914 18504 960471 966816 86103 475989 304890 458453 c 0 0 139055 214056 172103 89222 69371 49144 8887 893128 8180 8885 16953 13028 97952 118585 g 0 0 124297 278266 339663 198442 485495 86842 6817 12624 9943 8787 5969 97844 464158 307695 t 0 0 449314 228994 291296 368564 227451 68377 51381 75744 21405 15512 890975 413139 133000 115267
TATA_known1_shift2 (TATA_known1)		0.810	0.405	4.995	0.885	0.907	12	178	63	83	22	71.600	49	; cluster_2 versus TATA_known1; m=13/29; ncol2=10; w=-3; offset=-3; strand=D; shift=2; score= 71.6; --yCTW-AAAAr---- ; cor=0.810; Ncor=0.405; logoDP=4.995; NsEucl=0.885; NSW=0.907; rcor=12; rNcor=178; rlogoDP=63; rNsEucl=83; rNSW=22; rank_mean=71.600; match_rank=49 a 0 0 224551 0 24682 729993 0 1e+06 928144 1e+06 1e+06 293413 0 0 0 0 c 0 0 291168 762154 249065 0 0 0 0 0 0 101796 0 0 0 0 g 0 0 185629 198953 0 0 0 0 0 0 0 457335 0 0 0 0 t 0 0 298653 38893 726253 270007 0 0 71856 0 0 147455 0 0 0 0
HMGA1_2_rc_shift4 (HMGA1_2_rc)		0.725	0.531	1.647	0.911	0.913	119	70	154	10	15	73.600		; cluster_2 versus HMGA1_2_rc; m=14/29; ncol2=15; w=-1; offset=-1; strand=R; shift=4; score= 73.6; ----wmrrrAAWwTsm ; cor=0.725; Ncor=0.531; logoDP=1.647; NsEucl=0.911; NSW=0.913; rcor=119; rNcor=70; rlogoDP=154; rNsEucl=10; rNSW=15; rank_mean=73.600; match_rank= a 0 0 0 0 320000 280000 600000 480000 400000 800000 920000 680000 320000 160000 160000 320000 c 0 0 0 0 200000 360000 0 40000 160000 40000 0 40000 120000 40000 320000 560000 g 0 0 0 0 80000 160000 280000 360000 320000 0 80000 0 0 80000 400000 40000 t 0 0 0 0 400000 200000 120000 120000 120000 160000 0 280000 560000 720000 120000 80000
SOX30_1_shift3 (SOX30_1)		0.715	0.492	4.961	0.904	0.898	146	112	65	20	34	75.400		; cluster_2 versus SOX30_1; m=15/29; ncol2=16; w=-2; offset=-2; strand=D; shift=3; score= 75.4; ---rwdgAACAATkra ; cor=0.715; Ncor=0.492; logoDP=4.961; NsEucl=0.904; NSW=0.898; rcor=146; rNcor=112; rlogoDP=65; rNsEucl=20; rNSW=34; rank_mean=75.400; match_rank= a 0 0 0 372432 328072 289417 157571 716832 957368 3907 977231 976481 67568 158205 334549 456431 c 0 0 0 102933 182071 84511 227851 49010 3162 862678 7658 4510 4353 108442 91557 182602 g 0 0 0 322145 157347 292873 441662 201411 4402 9407 4263 15225 5071 467023 510241 150234 t 0 0 0 202491 332510 333198 172917 32747 35068 124008 10847 3784 923008 266330 63654 210732
ONECUT3_1_shift6 (ONECUT3_1)		0.739	0.492	4.720	0.891	0.882	93	111	79	47	81	82.200		; cluster_2 versus ONECUT3_1; m=16/29; ncol2=14; w=0; offset=1; strand=D; shift=6; score= 82.2; ------aaAAAATCrA ; cor=0.739; Ncor=0.492; logoDP=4.720; NsEucl=0.891; NSW=0.882; rcor=93; rNcor=111; rlogoDP=79; rNsEucl=47; rNSW=81; rank_mean=82.200; match_rank= a 0 0 0 0 0 0 466941 633388 786547 801477 970625 990712 5137 3764 646375 993951 c 0 0 0 0 0 0 168092 62336 35446 22805 4470 815 16536 994927 3273 981 g 0 0 0 0 0 0 228289 187664 64424 14764 16284 6681 2248 491 348552 1471 t 0 0 0 0 0 0 136678 116612 113583 160954 8621 1792 976079 818 1800 3597
FOXJ2_2_rc_shift5 (FOXJ2_2_rc)		0.700	0.550	4.844	0.896	0.881	180	41	72	35	83	82.200		; cluster_2 versus FOXJ2_2_rc; m=17/29; ncol2=14; w=0; offset=0; strand=R; shift=5; score= 82.2; -----amAAaTATTrT ; cor=0.700; Ncor=0.550; logoDP=4.844; NsEucl=0.896; NSW=0.881; rcor=180; rNcor=41; rlogoDP=72; rNsEucl=35; rNSW=83; rank_mean=82.200; match_rank= a 0 0 0 0 0 500000 500000 833333 833333 666667 0 833333 0 0 666667 166667 c 0 0 0 0 0 166667 333333 166667 0 166667 166667 0 0 0 0 0 g 0 0 0 0 0 166667 0 0 166667 166667 0 166667 0 0 333333 0 t 0 0 0 0 0 166667 166667 0 0 0 833333 0 1e+06 1e+06 0 833333
HOXD8_2_shift7 (HOXD8_2)		0.721	0.540	1.979	0.894	0.899	135	54	152	40	32	82.600		; cluster_2 versus HOXD8_2; m=18/29; ncol2=10; w=0; offset=2; strand=D; shift=7; score= 82.6; -------rmwAATtar ; cor=0.721; Ncor=0.540; logoDP=1.979; NsEucl=0.894; NSW=0.899; rcor=135; rNcor=54; rlogoDP=152; rNsEucl=40; rNSW=32; rank_mean=82.600; match_rank= a 0 0 0 0 0 0 0 353933 345506 309960 734777 891113 176471 58874 643180 365682 c 0 0 0 0 0 0 0 217697 366573 62948 165119 3755 28361 119454 53297 82982 g 0 0 0 0 0 0 0 396067 87079 59761 54696 10013 47269 214164 55104 371308 t 0 0 0 0 0 0 0 32303 200843 567331 45408 95119 747899 607508 248419 180028
FOXJ3_2_shift4 (FOXJ3_2)		0.779	0.454	3.986	0.881	0.900	30	143	122	97	28	84.000		; cluster_2 versus FOXJ3_2; m=19/29; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score= 84; ----rTAAAcAA---- ; cor=0.779; Ncor=0.454; logoDP=3.986; NsEucl=0.881; NSW=0.900; rcor=30; rNcor=143; rlogoDP=122; rNsEucl=97; rNSW=28; rank_mean=84.000; match_rank= a 0 0 0 0 453438 129527 910460 922151 900470 234165 993945 705774 0 0 0 0 c 0 0 0 0 0 49110 35658 9631 0 551344 0 90909 0 0 0 0 g 0 0 0 0 546562 116022 30903 21669 46238 143954 6055 75553 0 0 0 0 t 0 0 0 0 0 705341 22979 46549 53292 70537 0 127764 0 0 0 0
SOX7_3_shift6 (SOX7_3)		0.738	0.410	7.004	0.890	0.878	95	174	15	53	99	87.200		; cluster_2 versus SOX7_3; m=20/29; ncol2=17; w=0; offset=1; strand=D; shift=6; score= 87.2; ------rAACAATkky ; cor=0.738; Ncor=0.410; logoDP=7.004; NsEucl=0.890; NSW=0.878; rcor=95; rNcor=174; rlogoDP=15; rNsEucl=53; rNSW=99; rank_mean=87.200; match_rank= a 0 0 0 0 0 0 511363 998161 997549 307 1e+06 987864 307 31167 235565 613 c 0 0 0 0 0 0 77396 0 0 999693 0 607 614 2375 62961 637867 g 0 0 0 0 0 0 257985 1226 2145 0 0 11226 0 380528 356265 1532 t 0 0 0 0 0 0 153256 613 306 0 0 303 999079 585930 345209 359988
HDAC2_disc6_shift2 (HDAC2_disc6)		0.705	0.517	3.872	0.904	0.898	164	92	127	21	35	87.800		; cluster_2 versus HDAC2_disc6; m=21/29; ncol2=15; w=-3; offset=-3; strand=D; shift=2; score= 87.8; --arrrrAArAAArrm ; cor=0.705; Ncor=0.517; logoDP=3.872; NsEucl=0.904; NSW=0.898; rcor=164; rNcor=92; rlogoDP=127; rNsEucl=21; rNSW=35; rank_mean=87.800; match_rank= a 0 0 533333 600000 383333 566666 550000 966666 750000 316667 750000 883333 766667 533333 450000 616666 c 0 0 116667 0 0 0 0 16667 16667 0 116667 66667 0 16667 0 316667 g 0 0 183333 300000 500000 416667 450000 0 233333 616666 133333 50000 200000 300000 416667 0 t 0 0 166667 100000 116667 16667 0 16667 0 66667 0 0 33333 150000 133333 66667
SOX3_1_shift6 (SOX3_1)		0.732	0.407	6.766	0.890	0.878	104	177	20	54	101	91.200		; cluster_2 versus SOX3_1; m=22/29; ncol2=17; w=0; offset=1; strand=D; shift=6; score= 91.2; ------aAACAATray ; cor=0.732; Ncor=0.407; logoDP=6.766; NsEucl=0.890; NSW=0.878; rcor=104; rNcor=177; rlogoDP=20; rNsEucl=54; rNSW=101; rank_mean=91.200; match_rank= a 0 0 0 0 0 0 630589 979202 986663 203 998883 999695 0 333542 472358 105608 c 0 0 0 0 0 0 127846 2488 602 998275 203 102 305 986 151524 455149 g 0 0 0 0 0 0 159045 11941 11030 0 102 203 0 548405 168598 91 t 0 0 0 0 0 0 82520 6369 1705 1522 812 0 999695 117067 207520 439153
CPEB1_1_shift4 (CPEB1_1)		0.777	0.454	4.804	0.871	0.883	33	144	74	134	76	92.200		; cluster_2 versus CPEB1_1; m=23/29; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score= 92.2; ----aATAAAAa---- ; cor=0.777; Ncor=0.454; logoDP=4.804; NsEucl=0.871; NSW=0.883; rcor=33; rNcor=144; rlogoDP=74; rNsEucl=134; rNSW=76; rank_mean=92.200; match_rank= a 0 0 0 0 525709 827471 5570 981525 949236 938347 994200 516227 0 0 0 0 c 0 0 0 0 51365 13391 0 0 0 1043 0 90019 0 0 0 0 g 0 0 0 0 249502 137299 4332 12612 5999 33042 5800 249787 0 0 0 0 t 0 0 0 0 173424 21839 990098 5863 44765 27568 0 143967 0 0 0 0
PDX1_3_rc_shift10 (PDX1_3_rc)		0.773	0.422	0.415	0.871	0.900	34	168	171	135	30	107.600		; cluster_2 versus PDX1_3_rc; m=24/29; ncol2=6; w=0; offset=5; strand=R; shift=10; score= 107.6; ----------mATT-g ; cor=0.773; Ncor=0.422; logoDP=0.415; NsEucl=0.871; NSW=0.900; rcor=34; rNcor=168; rlogoDP=171; rNsEucl=135; rNSW=30; rank_mean=107.600; match_rank= a 0 0 0 0 0 0 0 0 0 0 612903 967742 0 0 0 193548 c 0 0 0 0 0 0 0 0 0 0 322581 32258 0 0 0 161290 g 0 0 0 0 0 0 0 0 0 0 32258 0 0 0 0 612903 t 0 0 0 0 0 0 0 0 0 0 32258 0 1e+06 1e+06 0 32258
TATA_known3_shift6 (TATA_known3)		0.724	0.526	3.650	0.877	0.879	124	77	133	110	95	107.800		; cluster_2 versus TATA_known3; m=25/29; ncol2=8; w=0; offset=1; strand=D; shift=6; score= 107.8; ------tA-AAATw-- ; cor=0.724; Ncor=0.526; logoDP=3.650; NsEucl=0.877; NSW=0.879; rcor=124; rNcor=77; rlogoDP=133; rNsEucl=110; rNSW=95; rank_mean=107.800; match_rank= a 0 0 0 0 0 0 63830 723404 0 1e+06 1e+06 851064 63830 446809 0 0 c 0 0 0 0 0 0 85106 0 0 0 0 21277 63830 85106 0 0 g 0 0 0 0 0 0 191489 127660 0 0 0 85106 127660 85106 0 0 t 0 0 0 0 0 0 659574 148936 0 0 0 42553 744681 382979 0 0
BARHL2_1_shift3 (BARHL2_1)		0.702	0.482	5.101	0.889	0.865	174	121	56	58	130	107.800		; cluster_2 versus BARHL2_1; m=26/29; ncol2=16; w=-2; offset=-2; strand=D; shift=3; score= 107.8; ---aamAAcCAATTAA ; cor=0.702; Ncor=0.482; logoDP=5.101; NsEucl=0.889; NSW=0.865; rcor=174; rNcor=121; rlogoDP=56; rNsEucl=58; rNSW=130; rank_mean=107.800; match_rank= a 0 0 0 461695 573918 509202 781754 909629 185305 4152 952728 962648 2949 2773 985960 728479 c 0 0 0 224449 178052 299283 35879 18003 442819 938941 4094 6522 2007 3794 635 23198 g 0 0 0 118884 84607 46830 132996 66327 168153 741 36915 1095 2143 1682 3183 141457 t 0 0 0 194972 163423 144686 49371 6042 203723 56166 6262 29735 992902 991751 10222 106866
SRY_3_shift4 (SRY_3)		0.722	0.482	4.234	0.878	0.880	129	124	106	108	91	111.600		; cluster_2 versus SRY_3; m=27/29; ncol2=9; w=-1; offset=-1; strand=D; shift=4; score= 111.6; ----kwwaACAAw--- ; cor=0.722; Ncor=0.482; logoDP=4.234; NsEucl=0.878; NSW=0.880; rcor=129; rNcor=124; rlogoDP=106; rNsEucl=108; rNSW=91; rank_mean=111.600; match_rank= a 0 0 0 0 178571 285714 535714 642857 892857 0 1e+06 964286 250000 0 0 0 c 0 0 0 0 178571 107143 0 107143 0 928571 0 0 0 0 0 0 g 0 0 0 0 357143 142857 107143 107143 0 0 0 35714 71429 0 0 0 t 0 0 0 0 285714 464286 357143 142857 107143 71429 0 0 678571 0 0 0
NKX2-5_4_rc_shift9 (NKX2-5_4_rc)		0.709	0.451	1.924	0.875	0.890	157	146	153	119	48	124.600		; cluster_2 versus NKX2-5_4_rc; m=28/29; ncol2=7; w=0; offset=4; strand=R; shift=9; score= 124.6; ---------camTTAw ; cor=0.709; Ncor=0.451; logoDP=1.924; NsEucl=0.875; NSW=0.890; rcor=157; rNcor=146; rlogoDP=153; rNsEucl=119; rNSW=48; rank_mean=124.600; match_rank= a 0 0 0 0 0 0 0 0 0 176471 647059 588235 0 0 764706 529412 c 0 0 0 0 0 0 0 0 0 647059 0 411765 0 0 0 58824 g 0 0 0 0 0 0 0 0 0 58824 117647 0 0 0 235294 0 t 0 0 0 0 0 0 0 0 0 117647 235294 0 1e+06 1e+06 0 411765
HOXA13_4_shift3 (HOXA13_4)		0.702	0.432	3.104	0.873	0.872	173	156	143	124	115	142.200		; cluster_2 versus HOXA13_4; m=29/29; ncol2=10; w=-2; offset=-2; strand=D; shift=3; score= 142.2; ---cyaA-AAAam--- ; cor=0.702; Ncor=0.432; logoDP=3.104; NsEucl=0.873; NSW=0.872; rcor=173; rNcor=156; rlogoDP=143; rNsEucl=124; rNSW=115; rank_mean=142.200; match_rank= a 0 0 0 161458 2625 669377 888489 0 894927 939163 988000 641558 421053 0 0 0 c 0 0 0 643229 648294 189702 0 0 32609 0 12000 155844 291498 0 0 0 g 0 0 0 184896 20997 24390 0 0 18116 0 0 114286 93117 0 0 0 t 0 0 0 10417 328084 116531 111511 0 54348 60837 0 88312 194332 0 0 0

One-to-n matrix alignment; reference matrix: cluster_5_shift5 ; 74 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_5_shift5 (cluster_5)														; cluster_5; m=0 (reference); ncol1=11; shift=5; ncol=16; -----AgAATTATsaa ; Alignment reference a 0 0 0 0 0 99 26 129 135 15 3 129 4 5 91 78 c 0 0 0 0 0 7 13 1 0 0 1 3 0 62 9 14 g 0 0 0 0 0 22 76 3 2 2 2 2 4 55 24 20 t 0 0 0 0 0 10 23 5 1 121 132 4 130 16 14 26
DLX1_2_shift4 (DLX1_2)		0.828	0.621	4.254	0.908	0.924	7	5	105	15	5	27.400	4	; cluster_5 versus DLX1_2; m=1/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 27.4; ----mmyAATTAkc-- ; cor=0.828; Ncor=0.621; logoDP=4.254; NsEucl=0.908; NSW=0.924; rcor=7; rNcor=5; rlogoDP=105; rNsEucl=15; rNSW=5; rank_mean=27.400; match_rank=4 a 0 0 0 0 256370 312002 213986 836042 923909 106903 16867 801646 214225 194807 0 0 c 0 0 0 0 341142 337479 256690 86926 11715 4374 38569 9971 228716 377536 0 0 g 0 0 0 0 219056 192224 13893 41999 4686 5228 54899 3485 250815 228623 0 0 t 0 0 0 0 183432 158295 515431 35033 59690 883495 889665 184898 306243 199034 0 0
DLX5_2_shift5 (DLX5_2)		0.816	0.594	4.209	0.895	0.912	9	10	107	38	17	36.200	9	; cluster_5 versus DLX5_2; m=2/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 36.2; -----vyAATTAh--- ; cor=0.816; Ncor=0.594; logoDP=4.209; NsEucl=0.895; NSW=0.912; rcor=9; rNcor=10; rlogoDP=107; rNsEucl=38; rNSW=17; rank_mean=36.200; match_rank=9 a 0 0 0 0 0 255490 69070 838448 875905 33376 58957 913503 258385 0 0 0 c 0 0 0 0 0 265880 433753 65730 46329 26701 26592 11432 263817 0 0 0 g 0 0 0 0 0 278867 11077 28113 29162 27993 41435 9707 172414 0 0 0 t 0 0 0 0 0 199764 486099 67709 48604 911930 873016 65358 305385 0 0 0
DLX1_3_shift5 (DLX1_3)		0.795	0.578	4.741	0.889	0.902	17	14	78	57	27	38.600	10	; cluster_5 versus DLX1_3; m=3/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 38.6; -----syAATTAm--- ; cor=0.795; Ncor=0.578; logoDP=4.741; NsEucl=0.889; NSW=0.902; rcor=17; rNcor=14; rlogoDP=78; rNsEucl=57; rNSW=27; rank_mean=38.600; match_rank=10 a 0 0 0 0 0 249973 54672 825530 915887 106 26673 910385 265908 0 0 0 c 0 0 0 0 0 293072 510039 69226 50877 5174 67852 13951 301128 0 0 0 g 0 0 0 0 0 279983 11233 46824 10234 2534 26018 7654 187061 0 0 0 t 0 0 0 0 0 176971 424056 58420 23002 992186 879457 68010 245903 0 0 0
DLX6_1_shift5 (DLX6_1)		0.787	0.572	5.026	0.887	0.898	23	18	61	72	36	42.000	11	; cluster_5 versus DLX6_1; m=4/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 42; -----syAATTAm--- ; cor=0.787; Ncor=0.572; logoDP=5.026; NsEucl=0.887; NSW=0.898; rcor=23; rNcor=18; rlogoDP=61; rNsEucl=72; rNSW=36; rank_mean=42.000; match_rank=11 a 0 0 0 0 0 229596 49281 813837 935783 4554 16672 916493 268014 0 0 0 c 0 0 0 0 0 352784 507194 84704 44238 0 48628 10482 313763 0 0 0 g 0 0 0 0 0 259344 7554 44369 0 0 23619 5590 180328 0 0 0 t 0 0 0 0 0 158276 435971 57090 19979 995446 911081 67435 237896 0 0 0
HESX1_1_rc_shift4 (HESX1_1_rc)		0.760	0.570	5.938	0.889	0.889	47	21	34	62	54	43.600	14	; cluster_5 versus HESX1_1_rc; m=5/73; ncol2=10; w=-1; offset=-1; strand=R; shift=4; score= 43.6; ----ryyAATTArc-- ; cor=0.760; Ncor=0.570; logoDP=5.938; NsEucl=0.889; NSW=0.889; rcor=47; rNcor=21; rlogoDP=34; rNsEucl=62; rNSW=54; rank_mean=43.600; match_rank=14 a 0 0 0 0 296906 91624 23057 996330 996330 0 7459 948521 322525 182756 0 0 c 0 0 0 0 113212 412921 518183 0 3670 2202 12753 7920 109801 428150 0 0 g 0 0 0 0 393173 189634 9033 3670 0 1712 0 0 351756 184967 0 0 t 0 0 0 0 196709 305822 449727 0 0 996086 979788 43559 215917 204127 0 0
EN2_2_shift4 (EN2_2)		0.753	0.565	5.537	0.890	0.891	61	23	49	51	45	45.800	15	; cluster_5 versus EN2_2; m=6/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 45.8; ----hyyAATTAac-- ; cor=0.753; Ncor=0.565; logoDP=5.537; NsEucl=0.890; NSW=0.891; rcor=61; rNcor=23; rlogoDP=49; rNsEucl=51; rNSW=45; rank_mean=45.800; match_rank=15 a 0 0 0 0 285068 143072 0 882823 1e+06 0 0 900815 348416 195783 0 0 c 0 0 0 0 260935 365964 503771 13316 0 4505 116580 0 232278 390060 0 0 g 0 0 0 0 146305 206325 0 79893 0 0 24611 14946 214178 209337 0 0 t 0 0 0 0 307692 284639 496229 23968 0 995495 858809 84239 205128 204819 0 0
DLX3_2_shift5 (DLX3_2)		0.788	0.573	4.048	0.888	0.900	22	16	118	65	29	50.000	19	; cluster_5 versus DLX3_2; m=7/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 50; -----syAATTAm--- ; cor=0.788; Ncor=0.573; logoDP=4.048; NsEucl=0.888; NSW=0.900; rcor=22; rNcor=16; rlogoDP=118; rNsEucl=65; rNSW=29; rank_mean=50.000; match_rank=19 a 0 0 0 0 0 231767 70977 766967 890875 22697 45815 880485 276799 0 0 0 c 0 0 0 0 0 319312 512842 104210 65207 8659 61431 24288 291001 0 0 0 g 0 0 0 0 0 283939 20350 61479 7543 7872 51900 12144 185170 0 0 0 t 0 0 0 0 0 164982 395831 67344 36375 960772 840854 83083 247030 0 0 0
DLX4_2_shift5 (DLX4_2)		0.784	0.570	4.398	0.887	0.898	25	20	97	73	37	50.400	20	; cluster_5 versus DLX4_2; m=8/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 50.4; -----syAATTAm--- ; cor=0.784; Ncor=0.570; logoDP=4.398; NsEucl=0.887; NSW=0.898; rcor=25; rNcor=20; rlogoDP=97; rNsEucl=73; rNSW=37; rank_mean=50.400; match_rank=20 a 0 0 0 0 0 218747 56024 794281 902786 7175 31646 884308 254294 0 0 0 c 0 0 0 0 0 325840 529367 98840 55722 6930 62428 23182 307226 0 0 0 g 0 0 0 0 0 305185 11220 48695 4119 3098 38982 9831 189662 0 0 0 t 0 0 0 0 0 150228 403389 58184 37373 982797 866944 82679 248818 0 0 0
GBX2_2_shift4 (GBX2_2)		0.750	0.563	6.209	0.888	0.887	64	25	31	68	66	50.800	21	; cluster_5 versus GBX2_2; m=9/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 50.8; ----rsyAATTArs-- ; cor=0.750; Ncor=0.563; logoDP=6.209; NsEucl=0.888; NSW=0.887; rcor=64; rNcor=25; rlogoDP=31; rNsEucl=68; rNSW=66; rank_mean=50.800; match_rank=21 a 0 0 0 0 377622 137438 24813 934759 985985 0 10993 973221 300946 196923 0 0 c 0 0 0 0 188080 384323 550601 19470 9007 2219 19705 2596 164505 334685 0 0 g 0 0 0 0 297632 308021 3763 38017 4107 2364 23265 1067 388716 258532 0 0 t 0 0 0 0 136666 170217 420823 7754 901 995417 946037 23116 145833 209859 0 0
RAX_2_shift4 (RAX_2)		0.747	0.561	5.893	0.888	0.887	68	26	37	66	64	52.200	24	; cluster_5 versus RAX_2; m=10/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 52.2; ----ryyAATTAry-- ; cor=0.747; Ncor=0.561; logoDP=5.893; NsEucl=0.888; NSW=0.887; rcor=68; rNcor=26; rlogoDP=37; rNsEucl=66; rNSW=64; rank_mean=52.200; match_rank=24 a 0 0 0 0 321177 140547 80724 975728 970233 48521 27276 942924 435919 223466 0 0 c 0 0 0 0 153336 398425 483214 6877 15286 0 27276 0 117793 347430 0 0 g 0 0 0 0 381683 173715 9430 1214 4827 0 18824 7819 290751 158789 0 0 t 0 0 0 0 143804 287313 426631 16181 9654 951479 926624 49257 155537 270315 0 0
NKX6-2_1_shift2 (NKX6-2_1)		0.790	0.508	4.178	0.899	0.908	21	100	108	32	20	56.200	27	; cluster_5 versus NKX6-2_1; m=11/73; ncol2=12; w=-3; offset=-3; strand=D; shift=2; score= 56.2; --rwrd-AAwTabb-- ; cor=0.790; Ncor=0.508; logoDP=4.178; NsEucl=0.899; NSW=0.908; rcor=21; rNcor=100; rlogoDP=108; rNsEucl=32; rNSW=20; rank_mean=56.200; match_rank=27 a 0 0 285714 428571 571429 428571 0 1e+06 1e+06 428571 142857 571429 142857 142857 0 0 c 0 0 142857 142857 0 0 0 0 0 0 0 142857 285714 285714 0 0 g 0 0 428571 0 285714 285714 0 0 0 0 142857 142857 285714 285714 0 0 t 0 0 142857 428571 142857 285714 0 0 0 571429 714286 142857 285714 285714 0 0
EVX1_2_shift4 (EVX1_2)		0.747	0.561	4.480	0.891	0.892	70	27	93	49	44	56.600	28	; cluster_5 versus EVX1_2; m=12/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 56.6; ----gvtaATTAsc-- ; cor=0.747; Ncor=0.561; logoDP=4.480; NsEucl=0.891; NSW=0.892; rcor=70; rNcor=27; rlogoDP=93; rNsEucl=49; rNSW=44; rank_mean=56.600; match_rank=28 a 0 0 0 0 248163 259058 102205 493919 967521 0 26484 896536 168862 181404 0 0 c 0 0 0 0 228781 317456 200222 221941 3554 8143 52854 1590 265771 420319 0 0 g 0 0 0 0 391690 333038 22988 238789 28925 32450 19521 82340 344565 248036 0 0 t 0 0 0 0 131366 90448 674585 45351 0 959407 901141 19534 220801 150241 0 0
ALX3_2_shift4 (ALX3_2)		0.745	0.559	4.905	0.889	0.889	75	28	68	61	53	57.000	30	; cluster_5 versus ALX3_2; m=13/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 57; ----rcyAATTArc-- ; cor=0.745; Ncor=0.559; logoDP=4.905; NsEucl=0.889; NSW=0.889; rcor=75; rNcor=28; rlogoDP=68; rNsEucl=61; rNSW=53; rank_mean=57.000; match_rank=30 a 0 0 0 0 256975 135629 69878 852721 940759 6302 38694 903996 323179 226898 0 0 c 0 0 0 0 178358 472732 311037 52554 28842 10633 39532 18168 172683 407022 0 0 g 0 0 0 0 418072 174718 27254 36089 12345 1856 35551 4952 342765 208614 0 0 t 0 0 0 0 146595 216920 591831 58636 18054 981209 886223 72884 161373 157465 0 0
PRRX1_2_shift5 (PRRX1_2)		0.765	0.557	5.087	0.882	0.888	42	31	58	95	61	57.400	32	; cluster_5 versus PRRX1_2; m=14/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 57.4; -----yyAATTAr--- ; cor=0.765; Ncor=0.557; logoDP=5.087; NsEucl=0.882; NSW=0.888; rcor=42; rNcor=31; rlogoDP=58; rNsEucl=95; rNSW=61; rank_mean=57.400; match_rank=32 a 0 0 0 0 0 172901 86634 866743 963161 0 44402 922450 397439 0 0 0 c 0 0 0 0 0 379237 406046 39462 20273 126 80866 24859 178634 0 0 0 g 0 0 0 0 0 181563 40926 64416 8142 0 35269 5250 266382 0 0 0 t 0 0 0 0 0 266298 466394 29379 8424 999874 839463 47441 157545 0 0 0
GBX1_3_shift4 (GBX1_3)		0.741	0.556	5.518	0.887	0.886	85	33	50	71	71	62.000	36	; cluster_5 versus GBX1_3; m=15/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 62; ----rcyAATTArs-- ; cor=0.741; Ncor=0.556; logoDP=5.518; NsEucl=0.887; NSW=0.886; rcor=85; rNcor=33; rlogoDP=50; rNsEucl=71; rNSW=71; rank_mean=62.000; match_rank=36 a 0 0 0 0 311976 134988 46732 869693 983470 0 28483 938940 328217 218453 0 0 c 0 0 0 0 236259 440181 516167 58510 15260 0 42746 12212 211926 344092 0 0 g 0 0 0 0 271141 179984 10838 34869 0 1599 35700 5792 324894 260556 0 0 t 0 0 0 0 180625 244848 426263 36928 1270 998401 893071 43056 134964 176900 0 0
LHX3_2_shift2 (LHX3_2)		0.740	0.529	5.471	0.893	0.886	88	72	53	42	69	64.800	39	; cluster_5 versus LHX3_2; m=16/73; ncol2=13; w=-3; offset=-3; strand=D; shift=2; score= 64.8; --wAA--AATTAwyy- ; cor=0.740; Ncor=0.529; logoDP=5.471; NsEucl=0.893; NSW=0.886; rcor=88; rNcor=72; rlogoDP=53; rNsEucl=42; rNSW=69; rank_mean=64.800; match_rank=39 a 0 0 450000 800000 950000 0 0 950000 1e+06 100000 0 800000 450000 100000 100000 0 c 0 0 0 100000 0 0 0 0 0 100000 50000 50000 0 400000 450000 0 g 0 0 150000 100000 0 0 0 0 0 0 0 0 150000 0 150000 0 t 0 0 400000 0 50000 0 0 50000 0 800000 950000 150000 400000 500000 300000 0
GBX2_4_shift4 (GBX2_4)		0.742	0.557	3.903	0.890	0.891	81	30	126	52	47	67.200	41	; cluster_5 versus GBX2_4; m=17/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 67.2; ----vcyAATTArc-- ; cor=0.742; Ncor=0.557; logoDP=3.903; NsEucl=0.890; NSW=0.891; rcor=81; rNcor=30; rlogoDP=126; rNsEucl=52; rNSW=47; rank_mean=67.200; match_rank=41 a 0 0 0 0 306591 191079 58967 767247 879098 21957 42382 872965 289710 203130 0 0 c 0 0 0 0 261651 405459 575380 111139 62061 0 92543 22384 242091 381951 0 0 g 0 0 0 0 254993 235353 28267 79458 16686 8395 59549 25581 309024 227439 0 0 t 0 0 0 0 176764 168109 337386 42156 42155 969648 805526 79070 159174 187479 0 0
ESX1_2_shift4 (ESX1_2)		0.741	0.556	4.021	0.890	0.890	84	32	119	55	49	67.800	42	; cluster_5 versus ESX1_2; m=18/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 67.8; ----mcyAATTAvc-- ; cor=0.741; Ncor=0.556; logoDP=4.021; NsEucl=0.890; NSW=0.890; rcor=84; rNcor=32; rlogoDP=119; rNsEucl=55; rNSW=49; rank_mean=67.800; match_rank=42 a 0 0 0 0 289005 161955 60987 790922 897603 10066 71642 909162 288026 195026 0 0 c 0 0 0 0 279001 428047 497286 73604 66892 25460 125009 18162 259667 414586 0 0 g 0 0 0 0 245564 190835 14787 78831 12247 2355 47191 9540 274382 195454 0 0 t 0 0 0 0 186429 219163 426940 56643 23258 962119 756158 63136 177925 194934 0 0
SHOX_1_shift5 (SHOX_1)		0.755	0.549	5.662	0.878	0.880	58	44	43	107	89	68.200	43	; cluster_5 versus SHOX_1; m=19/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 68.2; -----yyAATTAr--- ; cor=0.755; Ncor=0.549; logoDP=5.662; NsEucl=0.878; NSW=0.880; rcor=58; rNcor=44; rlogoDP=43; rNsEucl=107; rNSW=89; rank_mean=68.200; match_rank=43 a 0 0 0 0 0 149090 66893 889075 983443 0 37345 946402 376484 0 0 0 c 0 0 0 0 0 380988 445883 37969 11644 1640 35277 7870 173151 0 0 0 g 0 0 0 0 0 186183 21341 29998 0 0 25462 1133 319064 0 0 0 t 0 0 0 0 0 283739 465882 42958 4913 998360 901916 44595 131301 0 0 0
ESX1_3_shift4 (ESX1_3)		0.741	0.556	4.078	0.889	0.890	86	34	115	56	50	68.200	44	; cluster_5 versus ESX1_3; m=20/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 68.2; ----rcyAATTArc-- ; cor=0.741; Ncor=0.556; logoDP=4.078; NsEucl=0.889; NSW=0.890; rcor=86; rNcor=34; rlogoDP=115; rNsEucl=56; rNSW=50; rank_mean=68.200; match_rank=44 a 0 0 0 0 299377 181714 73989 801291 890152 20226 82390 912241 338686 212952 0 0 c 0 0 0 0 228863 427348 461300 67886 60971 26620 100635 12215 215002 409370 0 0 g 0 0 0 0 266253 150525 12109 76838 21665 107 28209 11498 286613 174915 0 0 t 0 0 0 0 205508 240413 452603 53985 27212 953047 788766 64046 159700 202762 0 0
PAX4_2_shift3 (PAX4_2)		0.755	0.523	3.842	0.892	0.896	56	86	128	44	39	70.600	45	; cluster_5 versus PAX4_2; m=21/73; ncol2=11; w=-2; offset=-2; strand=D; shift=3; score= 70.6; ---rAmwAATTavs-- ; cor=0.755; Ncor=0.523; logoDP=3.842; NsEucl=0.892; NSW=0.896; rcor=56; rNcor=86; rlogoDP=128; rNsEucl=44; rNSW=39; rank_mean=70.600; match_rank=45 a 0 0 0 266667 722222 550000 400000 750000 1e+06 100000 100000 550000 250000 157895 0 0 c 0 0 0 133333 55556 250000 0 100000 0 0 50000 50000 450000 473684 0 0 g 0 0 0 466667 222222 50000 100000 100000 0 0 50000 200000 250000 315789 0 0 t 0 0 0 133333 0 150000 500000 50000 0 900000 800000 200000 50000 52632 0 0
DLX2_1_shift2 (DLX2_1)		0.722	0.496	5.810	0.900	0.891	131	110	40	27	46	70.800	46	; cluster_5 versus DLX2_1; m=22/73; ncol2=16; w=-3; offset=-3; strand=D; shift=2; score= 70.8; --vrdrYAATTRbhym ; cor=0.722; Ncor=0.496; logoDP=5.810; NsEucl=0.900; NSW=0.891; rcor=131; rNcor=110; rlogoDP=40; rNsEucl=27; rNSW=46; rank_mean=70.800; match_rank=46 a 0 0 325237 268070 314889 488521 11042 974839 979637 14820 7673 694940 81356 296403 177909 254519 c 0 0 286661 236142 78265 91236 293634 8852 3933 1610 8637 384 369572 310443 317594 435683 g 0 0 343859 380964 310443 312895 384 8637 1610 3933 8852 293634 282530 78265 80845 118544 t 0 0 44243 114824 296403 107348 694940 7673 14820 979637 974839 11042 266541 314889 423652 191255
DLX3_1_rc_shift1 (DLX3_1_rc)		0.756	0.489	3.386	0.904	0.899	53	114	138	19	33	71.400	48	; cluster_5 versus DLX3_1_rc; m=23/73; ncol2=17; w=-4; offset=-4; strand=R; shift=1; score= 71.4; -kwskgTAATTAthky ; cor=0.756; Ncor=0.489; logoDP=3.386; NsEucl=0.904; NSW=0.899; rcor=53; rNcor=114; rlogoDP=138; rNsEucl=19; rNSW=33; rank_mean=71.400; match_rank=48 a 0 202600 301055 149159 110764 233601 5260 983452 991496 4523 13754 963356 125406 295508 72424 150831 c 0 129498 128879 365948 53716 121013 247141 7184 1886 1926 2953 450 228390 299277 246477 374243 g 0 384010 201561 304469 490403 571797 881 2610 2257 1618 2051 31749 39818 118521 415436 201589 t 0 283893 368505 180424 345116 73590 746718 6754 4360 991934 981242 4445 606385 286693 265663 273337
DLX2_2_shift5 (DLX2_2)		0.762	0.554	3.114	0.882	0.889	45	35	142	87	51	72.000	51	; cluster_5 versus DLX2_2; m=24/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 72; -----syaATTAm--- ; cor=0.762; Ncor=0.554; logoDP=3.114; NsEucl=0.882; NSW=0.889; rcor=45; rNcor=35; rlogoDP=142; rNsEucl=87; rNSW=51; rank_mean=72.000; match_rank=51 a 0 0 0 0 0 225210 100674 677727 820609 24983 56891 816509 264564 0 0 0 c 0 0 0 0 0 335726 545062 144566 102468 18044 112743 33296 309756 0 0 0 g 0 0 0 0 0 265403 24705 82552 11299 13491 62449 23207 199423 0 0 0 t 0 0 0 0 0 173660 329559 95155 65624 943482 767917 126988 226256 0 0 0
PRRX2_4_shift5 (PRRX2_4)		0.759	0.552	3.938	0.882	0.888	50	37	123	94	60	72.800		; cluster_5 versus PRRX2_4; m=25/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 72.8; -----yyAATTAr--- ; cor=0.759; Ncor=0.552; logoDP=3.938; NsEucl=0.882; NSW=0.888; rcor=50; rNcor=37; rlogoDP=123; rNsEucl=94; rNSW=60; rank_mean=72.800; match_rank= a 0 0 0 0 0 167273 90324 782317 900351 3338 92131 858003 320603 0 0 0 c 0 0 0 0 0 395325 455393 73374 54269 5648 99644 44137 228111 0 0 0 g 0 0 0 0 0 185714 55482 83740 29006 2824 47252 8694 268901 0 0 0 t 0 0 0 0 0 251688 398802 60569 16374 988190 760973 89166 182385 0 0 0
EVX2_2_shift4 (EVX2_2)		0.734	0.550	4.559	0.888	0.886	103	40	88	69	67	73.400		; cluster_5 versus EVX2_2; m=26/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 73.4; ----svTaATTAgc-- ; cor=0.734; Ncor=0.550; logoDP=4.559; NsEucl=0.888; NSW=0.886; rcor=103; rNcor=40; rlogoDP=88; rNsEucl=69; rNSW=67; rank_mean=73.400; match_rank= a 0 0 0 0 216014 251873 85850 495029 951668 235 13754 910587 200304 185015 0 0 c 0 0 0 0 250392 308830 191533 245752 7271 7796 39174 0 237916 377816 0 0 g 0 0 0 0 382664 344826 32739 222391 41061 32970 20200 69524 381458 244711 0 0 t 0 0 0 0 150930 94471 689878 36828 0 958999 926872 19889 180322 192458 0 0
MIXL1_1_shift4 (MIXL1_1)		0.735	0.551	4.149	0.888	0.888	99	38	110	64	59	74.000		; cluster_5 versus MIXL1_1; m=27/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 74; ----wyyAATTArm-- ; cor=0.735; Ncor=0.551; logoDP=4.149; NsEucl=0.888; NSW=0.888; rcor=99; rNcor=38; rlogoDP=110; rNsEucl=64; rNSW=59; rank_mean=74.000; match_rank= a 0 0 0 0 250499 147215 85214 803602 932611 0 39881 846253 358258 297833 0 0 c 0 0 0 0 223245 333925 376399 56789 22831 18390 122956 59552 180978 312921 0 0 g 0 0 0 0 245766 201945 40263 108763 19175 6527 58483 3599 315398 226647 0 0 t 0 0 0 0 280490 316914 498124 30846 25383 975083 778680 90596 145366 162599 0 0
VSX1_4_shift5 (VSX1_4)		0.755	0.549	4.148	0.880	0.886	55	42	111	99	70	75.400		; cluster_5 versus VSX1_4; m=28/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 75.4; -----yyAATTAr--- ; cor=0.755; Ncor=0.549; logoDP=4.148; NsEucl=0.880; NSW=0.886; rcor=55; rNcor=42; rlogoDP=111; rNsEucl=99; rNSW=70; rank_mean=75.400; match_rank= a 0 0 0 0 0 147311 79575 773719 889456 10899 39623 878221 319810 0 0 0 c 0 0 0 0 0 415330 454321 91593 61003 8215 71874 33876 246155 0 0 0 g 0 0 0 0 0 178901 45534 67730 22848 2521 35866 15843 258459 0 0 0 t 0 0 0 0 0 258459 420570 66958 26693 978365 852637 72060 175576 0 0 0
EN1_4_shift4 (EN1_4)		0.731	0.548	4.762	0.886	0.884	107	45	77	76	74	75.800		; cluster_5 versus EN1_4; m=29/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 75.8; ----vcyAATTArc-- ; cor=0.731; Ncor=0.548; logoDP=4.762; NsEucl=0.886; NSW=0.884; rcor=107; rNcor=45; rlogoDP=77; rNsEucl=76; rNSW=74; rank_mean=75.800; match_rank= a 0 0 0 0 275904 119417 33410 851708 962844 0 22505 900903 283500 150106 0 0 c 0 0 0 0 303859 469158 519298 68064 16676 15138 109589 11497 203586 384686 0 0 g 0 0 0 0 298086 234883 18721 48137 0 8014 62867 13414 367973 236402 0 0 t 0 0 0 0 122151 176542 428571 32091 20480 976848 805039 74186 144941 228806 0 0
DLX1_1_shift0 (DLX1_1)		0.758	0.426	6.580	0.887	0.885	51	162	25	74	73	77.000		; cluster_5 versus DLX1_1; m=30/73; ncol2=14; w=-5; offset=-5; strand=D; shift=0; score= 77; btgarrTAATTAay-- ; cor=0.758; Ncor=0.426; logoDP=6.580; NsEucl=0.887; NSW=0.885; rcor=51; rNcor=162; rlogoDP=25; rNsEucl=74; rNSW=73; rank_mean=77.000; match_rank= a 163842 132817 169467 447414 352705 285954 8260 987317 990185 7233 3462 942617 408909 76008 0 0 c 291218 241988 114132 244155 65283 141939 119989 5592 2369 1028 7126 920 192781 358323 0 0 g 273647 127403 606759 212138 403228 371251 1052 5756 1821 2257 8135 45030 197071 120230 0 0 t 271293 497792 109642 96293 178784 200856 870700 1335 5626 989482 981277 11433 201240 445440 0 0
HOXA2_3_shift4 (HOXA2_3)		0.727	0.546	4.872	0.886	0.883	113	47	70	77	78	77.000		; cluster_5 versus HOXA2_3; m=31/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 77; ----rsTmATTAvc-- ; cor=0.727; Ncor=0.546; logoDP=4.872; NsEucl=0.886; NSW=0.883; rcor=113; rNcor=47; rlogoDP=70; rNsEucl=77; rNSW=78; rank_mean=77.000; match_rank= a 0 0 0 0 316543 182764 63327 615420 942252 2653 30431 980266 264588 221033 0 0 c 0 0 0 0 230962 376784 219458 282799 16888 15753 80471 666 280472 375042 0 0 g 0 0 0 0 255850 287717 34117 74276 35137 5555 1244 0 292789 174652 0 0 t 0 0 0 0 196645 152735 683098 27505 5723 976039 887854 19068 162151 229273 0 0
SHOX2_2_shift5 (SHOX2_2)		0.747	0.544	5.501	0.876	0.877	69	49	51	115	103	77.400		; cluster_5 versus SHOX2_2; m=32/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 77.4; -----yyAATTAr--- ; cor=0.747; Ncor=0.544; logoDP=5.501; NsEucl=0.876; NSW=0.877; rcor=69; rNcor=49; rlogoDP=51; rNsEucl=115; rNSW=103; rank_mean=77.400; match_rank= a 0 0 0 0 0 147336 59853 893510 977177 10578 37281 917376 371561 0 0 0 c 0 0 0 0 0 405695 471912 45455 13600 1737 15936 19225 144434 0 0 0 g 0 0 0 0 0 182691 21029 14866 4533 789 32895 2495 364203 0 0 0 t 0 0 0 0 0 264278 447206 46169 4690 986896 913888 60904 119802 0 0 0
HOXD8_2_shift4 (HOXD8_2)		0.738	0.554	2.507	0.889	0.889	94	36	146	59	52	77.400		; cluster_5 versus HOXD8_2; m=33/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 77.4; ----rmwAATtarc-- ; cor=0.738; Ncor=0.554; logoDP=2.507; NsEucl=0.889; NSW=0.889; rcor=94; rNcor=36; rlogoDP=146; rNsEucl=59; rNSW=52; rank_mean=77.400; match_rank= a 0 0 0 0 353933 345506 309960 734777 891113 176471 58874 643180 365682 230337 0 0 c 0 0 0 0 217697 366573 62948 165119 3755 28361 119454 53297 82982 401685 0 0 g 0 0 0 0 396067 87079 59761 54696 10013 47269 214164 55104 371308 195225 0 0 t 0 0 0 0 32303 200843 567331 45408 95119 747899 607508 248419 180028 172753 0 0
NOBOX_1_rc_shift4 (NOBOX_1_rc)		0.822	0.479	0.681	0.887	0.910	8	127	164	75	19	78.600		; cluster_5 versus NOBOX_1_rc; m=34/73; ncol2=8; w=-1; offset=-1; strand=R; shift=4; score= 78.6; ----rsyAATTA---- ; cor=0.822; Ncor=0.479; logoDP=0.681; NsEucl=0.887; NSW=0.910; rcor=8; rNcor=127; rlogoDP=164; rNsEucl=75; rNSW=19; rank_mean=78.600; match_rank= a 0 0 0 0 447368 105263 26316 842105 894737 0 52632 973684 0 0 0 0 c 0 0 0 0 157895 473684 578947 105263 52632 0 0 0 0 0 0 0 g 0 0 0 0 342105 315789 0 0 26316 0 0 26316 0 0 0 0 t 0 0 0 0 52632 105263 394737 52632 26316 1e+06 947368 0 0 0 0 0
ALX3_3_shift4 (ALX3_3)		0.732	0.549	4.177	0.888	0.886	105	43	109	70	68	79.000		; cluster_5 versus ALX3_3; m=35/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 79; ----yyyAATTArm-- ; cor=0.732; Ncor=0.549; logoDP=4.177; NsEucl=0.888; NSW=0.886; rcor=105; rNcor=43; rlogoDP=109; rNsEucl=70; rNSW=68; rank_mean=79.000; match_rank= a 0 0 0 0 158817 125317 88066 795897 919566 9461 73045 838871 329736 350305 0 0 c 0 0 0 0 275993 431945 373447 51127 37007 8963 76399 47817 212164 310564 0 0 g 0 0 0 0 134823 146013 38265 89421 16460 996 25047 9265 279964 190833 0 0 t 0 0 0 0 430367 296724 500222 63555 26967 980580 825509 104047 178136 148299 0 0
SHOX2_3_shift5 (SHOX2_3)		0.745	0.542	5.745	0.875	0.875	76	52	41	118	110	79.400		; cluster_5 versus SHOX2_3; m=36/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 79.4; -----yyAATTAr--- ; cor=0.745; Ncor=0.542; logoDP=5.745; NsEucl=0.875; NSW=0.875; rcor=76; rNcor=52; rlogoDP=41; rNsEucl=118; rNSW=110; rank_mean=79.400; match_rank= a 0 0 0 0 0 131470 50500 909086 988043 1592 29568 941771 359886 0 0 0 c 0 0 0 0 0 423291 465645 31305 7500 659 26992 9998 166190 0 0 0 g 0 0 0 0 0 181088 11761 21303 163 0 43089 1865 348608 0 0 0 t 0 0 0 0 0 264151 472093 38306 4294 997749 900351 46366 125316 0 0 0
DLX4_1_rc_shift1 (DLX4_1_rc)		0.744	0.481	3.236	0.903	0.896	79	125	139	23	40	81.200		; cluster_5 versus DLX4_1_rc; m=37/73; ncol2=17; w=-4; offset=-4; strand=R; shift=1; score= 81.2; -gwskgTAATTAthgy ; cor=0.744; Ncor=0.481; logoDP=3.236; NsEucl=0.903; NSW=0.896; rcor=79; rNcor=125; rlogoDP=139; rNsEucl=23; rNSW=40; rank_mean=81.200; match_rank= a 0 129323 252620 163998 162741 141000 8640 973444 988742 3308 24709 946241 151513 298548 124648 152464 c 0 122796 111645 398406 60293 138530 230062 12094 2398 3111 5827 1328 238211 291900 170471 321815 g 0 530982 139574 264513 485094 523905 1219 5398 3047 1679 3560 43674 66796 126893 484478 225189 t 0 216899 496161 173083 291872 196565 760080 9065 5813 991903 965904 8757 543480 282659 220403 300532
PRRX1_3_shift5 (PRRX1_3)		0.747	0.543	4.447	0.878	0.881	73	51	94	105	87	82.000		; cluster_5 versus PRRX1_3; m=38/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 82; -----cyAATTAr--- ; cor=0.747; Ncor=0.543; logoDP=4.447; NsEucl=0.878; NSW=0.881; rcor=73; rNcor=51; rlogoDP=94; rNsEucl=105; rNSW=87; rank_mean=82.000; match_rank= a 0 0 0 0 0 138954 61142 840171 928643 5554 44213 853632 322951 0 0 0 c 0 0 0 0 0 441529 456870 63073 32667 2729 97801 59470 219100 0 0 0 g 0 0 0 0 0 171580 29141 52836 10676 0 35403 4781 291609 0 0 0 t 0 0 0 0 0 247936 452847 43920 28014 991717 822583 82117 166339 0 0 0
PAX4_7_shift5 (PAX4_7)		0.743	0.540	5.332	0.875	0.875	80	56	55	117	109	83.400		; cluster_5 versus PAX4_7; m=39/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 83.4; -----ctAATTAr--- ; cor=0.743; Ncor=0.540; logoDP=5.332; NsEucl=0.875; NSW=0.875; rcor=80; rNcor=56; rlogoDP=55; rNsEucl=117; rNSW=109; rank_mean=83.400; match_rank= a 0 0 0 0 0 148796 111111 944559 990312 7495 18054 743735 316348 0 0 0 c 0 0 0 0 0 503282 38153 30801 3229 7495 17051 132579 116773 0 0 0 g 0 0 0 0 0 113786 234940 9240 6459 0 42126 50121 488323 0 0 0 t 0 0 0 0 0 234136 615796 15400 0 985010 922769 73565 78556 0 0 0
HOXA2_2_shift4 (HOXA2_2)		0.722	0.542	4.620	0.885	0.882	128	53	85	78	82	85.200		; cluster_5 versus HOXA2_2; m=40/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 85.2; ----ssymATTAsc-- ; cor=0.722; Ncor=0.542; logoDP=4.620; NsEucl=0.885; NSW=0.882; rcor=128; rNcor=53; rlogoDP=85; rNsEucl=78; rNSW=82; rank_mean=85.200; match_rank= a 0 0 0 0 244380 175161 87082 595264 911165 0 15491 947085 243517 182506 0 0 c 0 0 0 0 291453 377699 265667 317854 34885 0 119985 14230 317084 421322 0 0 g 0 0 0 0 263744 296350 49308 66152 49792 667 0 3268 316082 227020 0 0 t 0 0 0 0 200423 150790 597943 20730 4158 999333 864524 35417 123317 169152 0 0
ALX1_4_shift4 (ALX1_4)		0.719	0.539	5.571	0.882	0.875	140	58	47	88	107	88.000		; cluster_5 versus ALX1_4; m=41/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 88; ----yyyAATTArm-- ; cor=0.719; Ncor=0.539; logoDP=5.571; NsEucl=0.882; NSW=0.875; rcor=140; rNcor=58; rlogoDP=47; rNsEucl=88; rNSW=107; rank_mean=88.000; match_rank= a 0 0 0 0 138864 94769 76449 900329 985796 3372 34955 906478 360292 378396 0 0 c 0 0 0 0 266416 470192 266319 13493 3195 5763 49241 33195 190282 291925 0 0 g 0 0 0 0 123031 125857 30277 65493 5840 838 6383 1422 314941 190447 0 0 t 0 0 0 0 471688 309182 626955 20685 5169 990027 909421 58905 134485 139233 0 0
GBX1_2_shift4 (GBX1_2)		0.720	0.540	6.506	0.880	0.870	137	55	26	101	122	88.200		; cluster_5 versus GBX1_2; m=42/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 88.2; ----rsyAATTAgc-- ; cor=0.720; Ncor=0.540; logoDP=6.506; NsEucl=0.880; NSW=0.870; rcor=137; rNcor=55; rlogoDP=26; rNsEucl=101; rNSW=122; rank_mean=88.200; match_rank= a 0 0 0 0 365801 61231 8805 947856 991874 1636 11011 986326 209225 128973 0 0 c 0 0 0 0 246050 547862 490742 20421 6240 4652 15458 1804 233257 428582 0 0 g 0 0 0 0 286686 254728 544 26280 1052 36 8682 289 446359 199020 0 0 t 0 0 0 0 101463 136179 499909 5443 834 993676 964849 11581 111160 243425 0 0
RAX2_1_shift5 (RAX2_1)		0.741	0.539	4.102	0.877	0.880	87	59	113	109	93	92.200		; cluster_5 versus RAX2_1; m=43/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 92.2; -----yyAATTAr--- ; cor=0.741; Ncor=0.539; logoDP=4.102; NsEucl=0.877; NSW=0.880; rcor=87; rNcor=59; rlogoDP=113; rNsEucl=109; rNSW=93; rank_mean=92.200; match_rank= a 0 0 0 0 0 137265 80669 795806 921508 6751 45361 842549 345102 0 0 0 c 0 0 0 0 0 406856 445404 62665 36116 18453 88587 57326 192661 0 0 0 g 0 0 0 0 0 181399 38271 91950 17951 3126 52604 7805 318108 0 0 0 t 0 0 0 0 0 274480 435655 49579 24425 971670 813448 92320 144129 0 0 0
MSX1_5_shift5 (MSX1_5)		0.735	0.535	5.100	0.874	0.873	101	66	57	123	114	92.200		; cluster_5 versus MSX1_5; m=44/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 92.2; -----syAATTAv--- ; cor=0.735; Ncor=0.535; logoDP=5.100; NsEucl=0.874; NSW=0.873; rcor=101; rNcor=66; rlogoDP=57; rNsEucl=123; rNSW=114; rank_mean=92.200; match_rank= a 0 0 0 0 0 150016 25721 863203 966352 0 17539 907293 278139 0 0 0 c 0 0 0 0 0 430849 664053 93258 33648 0 57071 34839 264802 0 0 0 g 0 0 0 0 0 256102 10351 39045 0 9987 69878 31001 307417 0 0 0 t 0 0 0 0 0 163033 299875 4494 0 990013 855512 26867 149642 0 0 0
POU1F1_2_rc_shift0 (POU1F1_2_rc)		0.736	0.450	2.075	0.903	0.896	98	147	151	24	41	92.200		; cluster_5 versus POU1F1_2_rc; m=45/73; ncol2=18; w=-5; offset=-5; strand=R; shift=0; score= 92.2; trkgwAtawttATGAA ; cor=0.736; Ncor=0.450; logoDP=2.075; NsEucl=0.903; NSW=0.896; rcor=98; rNcor=147; rlogoDP=151; rNsEucl=24; rNSW=41; rank_mean=92.200; match_rank= a 230769 250000 176471 235294 294118 705882 0 647059 588235 235294 176471 882353 235294 0 764706 941176 c 0 125000 58824 117647 58824 0 235294 176471 58824 0 235294 0 0 0 176471 0 g 230769 437500 352941 411765 176471 58824 117647 176471 0 235294 58824 0 58824 1e+06 58824 0 t 538462 187500 411765 235294 470588 235294 647059 0 352941 529412 529412 117647 705882 0 0 58824
HOXB3_2_shift4 (HOXB3_2)		0.716	0.537	4.571	0.884	0.880	145	62	87	84	92	94.000		; cluster_5 versus HOXB3_2; m=46/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 94; ----asymATTArc-- ; cor=0.716; Ncor=0.537; logoDP=4.571; NsEucl=0.884; NSW=0.880; rcor=145; rNcor=62; rlogoDP=87; rNsEucl=84; rNSW=92; rank_mean=94.000; match_rank= a 0 0 0 0 348864 198015 114383 539906 900391 0 31102 949014 352120 248004 0 0 c 0 0 0 0 195829 321368 326556 353748 38043 11495 59172 8755 164276 309714 0 0 g 0 0 0 0 244283 310513 39614 58057 44674 0 0 0 366850 231103 0 0 t 0 0 0 0 211024 170104 519447 48289 16892 988505 909726 42231 116753 211179 0 0
MSX2_5_shift5 (MSX2_5)		0.709	0.433	4.783	0.899	0.889	158	154	76	30	56	94.800		; cluster_5 versus MSX2_5; m=47/73; ncol2=18; w=0; offset=0; strand=D; shift=5; score= 94.8; -----syAATTAaaww ; cor=0.709; Ncor=0.433; logoDP=4.783; NsEucl=0.899; NSW=0.889; rcor=158; rNcor=154; rlogoDP=76; rNsEucl=30; rNSW=56; rank_mean=94.800; match_rank= a 0 0 0 0 0 141427 42984 824898 927820 0 50401 888400 520508 472902 431356 462500 c 0 0 0 0 0 297872 653603 75239 51128 1242 77892 11747 128906 187937 116102 98611 g 0 0 0 0 0 430538 24020 65663 16541 2484 9164 76358 170898 172203 167797 156944 t 0 0 0 0 0 130163 279393 34200 4511 996274 862543 23495 179688 166958 284746 281944
UNCX_3_shift5 (UNCX_3)		0.739	0.538	4.097	0.877	0.879	92	60	114	112	97	95.000		; cluster_5 versus UNCX_3; m=48/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 95; -----yyAATTAr--- ; cor=0.739; Ncor=0.538; logoDP=4.097; NsEucl=0.877; NSW=0.879; rcor=92; rNcor=60; rlogoDP=114; rNsEucl=112; rNSW=97; rank_mean=95.000; match_rank= a 0 0 0 0 0 134868 92470 791096 933937 12549 67960 843965 374018 0 0 0 c 0 0 0 0 0 361896 390816 54417 32930 21028 86463 50534 211910 0 0 0 g 0 0 0 0 0 154665 48526 98164 10623 3052 38928 16707 283811 0 0 0 t 0 0 0 0 0 348571 468188 56323 22510 963371 806649 88794 130261 0 0 0
LBX2_3_shift4 (LBX2_3)		0.719	0.539	4.020	0.885	0.881	139	57	120	80	84	96.000		; cluster_5 versus LBX2_3; m=49/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 96; ----rcyAATTArc-- ; cor=0.719; Ncor=0.539; logoDP=4.020; NsEucl=0.885; NSW=0.881; rcor=139; rNcor=57; rlogoDP=120; rNsEucl=80; rNSW=84; rank_mean=96.000; match_rank= a 0 0 0 0 270027 122204 48130 806243 854779 0 40573 912302 330330 240988 0 0 c 0 0 0 0 246662 479800 500920 90958 82739 9227 69786 10353 144811 326101 0 0 g 0 0 0 0 277704 159265 33415 87460 37090 37544 79253 32278 378712 245995 0 0 t 0 0 0 0 205607 238731 417535 15339 25392 953229 810388 45067 146146 186916 0 0
MNX1_2_shift4 (MNX1_2)		0.714	0.536	4.715	0.883	0.877	149	64	80	85	102	96.000		; cluster_5 versus MNX1_2; m=50/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 96; ----dsyAATTAaa-- ; cor=0.714; Ncor=0.536; logoDP=4.715; NsEucl=0.883; NSW=0.877; rcor=149; rNcor=64; rlogoDP=80; rNsEucl=85; rNSW=102; rank_mean=96.000; match_rank= a 0 0 0 0 349180 208197 1618 775096 944272 12103 167464 1e+06 523810 432079 0 0 c 0 0 0 0 40984 273770 351133 153748 55728 65053 25120 0 88670 201309 0 0 g 0 0 0 0 350820 313115 11327 0 0 0 77751 0 183908 178396 0 0 t 0 0 0 0 259016 204918 635922 71156 0 922844 729665 0 203612 188216 0 0
SRY_4_shift4 (SRY_4)		0.704	0.484	5.668	0.891	0.869	168	119	42	48	125	100.400		; cluster_5 versus SRY_4; m=51/73; ncol2=16; w=-1; offset=-1; strand=D; shift=4; score= 100.4; ----thtwATTATAAT ; cor=0.704; Ncor=0.484; logoDP=5.668; NsEucl=0.891; NSW=0.869; rcor=168; rNcor=119; rlogoDP=42; rNsEucl=48; rNSW=125; rank_mean=100.400; match_rank= a 0 0 0 0 173554 317107 240662 431219 958925 49111 72130 917456 8798 908615 926981 22903 c 0 0 0 0 244647 259459 181192 156611 11290 11065 13140 3886 69860 6115 12843 6882 g 0 0 0 0 248735 118295 247535 141440 6882 12843 6115 69860 3886 13140 11065 11290 t 0 0 0 0 333064 305139 330610 270729 22903 926981 908615 8798 917456 72130 49111 958925
DBX1_1_shift2 (DBX1_1)		0.713	0.461	2.092	0.902	0.894	151	137	150	26	42	101.200		; cluster_5 versus DBX1_1; m=52/73; ncol2=17; w=-3; offset=-3; strand=D; shift=2; score= 101.2; --twrttaATTAwtaa ; cor=0.713; Ncor=0.461; logoDP=2.092; NsEucl=0.902; NSW=0.894; rcor=151; rNcor=137; rlogoDP=150; rNsEucl=26; rNSW=42; rank_mean=101.200; match_rank= a 0 0 193358 611960 459770 226103 241226 621421 737972 110802 129567 729342 540257 195987 587529 497416 c 0 0 228955 68099 57385 127408 228640 137382 31899 98497 110629 31636 104927 148698 72583 161804 g 0 0 160692 48494 307824 101076 67165 78412 51833 73668 36048 88480 48065 98709 170635 219409 t 0 0 416995 271446 175021 545413 462969 162785 178295 717033 723756 150541 306750 556606 169252 121371
LMX1B_2_shift5 (LMX1B_2)		0.735	0.535	3.784	0.877	0.878	100	65	130	114	100	101.800		; cluster_5 versus LMX1B_2; m=53/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 101.8; -----tyAATtAa--- ; cor=0.735; Ncor=0.535; logoDP=3.784; NsEucl=0.877; NSW=0.878; rcor=100; rNcor=65; rlogoDP=130; rNsEucl=114; rNSW=100; rank_mean=101.800; match_rank= a 0 0 0 0 0 211220 111735 791087 935020 70230 214912 871811 513171 0 0 0 c 0 0 0 0 0 235366 294216 59028 13680 2460 65318 19983 161463 0 0 0 g 0 0 0 0 0 239512 34956 63465 9804 10065 66433 4252 197317 0 0 0 t 0 0 0 0 0 313902 559093 86420 41496 917245 653337 103954 128049 0 0 0
CBX5_1_shift7 (CBX5_1)		0.727	0.467	4.372	0.885	0.881	114	133	100	81	86	102.800		; cluster_5 versus CBX5_1; m=54/73; ncol2=12; w=0; offset=2; strand=D; shift=7; score= 102.8; -------AATwtTyam ; cor=0.727; Ncor=0.467; logoDP=4.372; NsEucl=0.885; NSW=0.881; rcor=114; rNcor=133; rlogoDP=100; rNsEucl=81; rNSW=86; rank_mean=102.800; match_rank= a 0 0 0 0 0 0 0 1e+06 833333 166667 500000 166667 166667 0 666667 666667 c 0 0 0 0 0 0 0 0 166667 0 0 0 0 666667 0 333333 g 0 0 0 0 0 0 0 0 0 0 166667 166667 0 0 166667 0 t 0 0 0 0 0 0 0 0 0 833333 333333 666667 833333 333333 166667 0
NKX2-5_4_rc_shift6 (NKX2-5_4_rc)		0.766	0.487	2.597	0.870	0.882	40	116	144	136	79	103.000		; cluster_5 versus NKX2-5_4_rc; m=55/73; ncol2=7; w=0; offset=1; strand=R; shift=6; score= 103; ------camTTAw--- ; cor=0.766; Ncor=0.487; logoDP=2.597; NsEucl=0.870; NSW=0.882; rcor=40; rNcor=116; rlogoDP=144; rNsEucl=136; rNSW=79; rank_mean=103.000; match_rank= a 0 0 0 0 0 0 176471 647059 588235 0 0 764706 529412 0 0 0 c 0 0 0 0 0 0 647059 0 411765 0 0 0 58824 0 0 0 g 0 0 0 0 0 0 58824 117647 0 0 0 235294 0 0 0 0 t 0 0 0 0 0 0 117647 235294 0 1e+06 1e+06 0 411765 0 0 0
MSX1_3_shift5 (MSX1_3)		0.704	0.430	4.490	0.899	0.888	169	161	92	31	62	103.000		; cluster_5 versus MSX1_3; m=56/73; ncol2=18; w=0; offset=0; strand=D; shift=5; score= 103; -----syAATTAaaww ; cor=0.704; Ncor=0.430; logoDP=4.490; NsEucl=0.899; NSW=0.888; rcor=169; rNcor=161; rlogoDP=92; rNsEucl=31; rNSW=62; rank_mean=103.000; match_rank= a 0 0 0 0 0 144368 42722 791258 923898 3553 79789 885714 532916 504303 446652 484702 c 0 0 0 0 0 343186 634208 84617 46186 3553 78757 10133 116942 163490 120351 120053 g 0 0 0 0 0 377722 21214 71395 20294 2985 11085 61462 159954 153142 155202 139674 t 0 0 0 0 0 134723 301856 52730 9622 989909 830369 42691 190188 179065 277795 255570
EN2_4_shift4 (EN2_4)		0.702	0.526	5.558	0.878	0.866	172	78	48	106	129	106.600		; cluster_5 versus EN2_4; m=57/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 106.6; ----ssTAATTAgb-- ; cor=0.702; Ncor=0.526; logoDP=5.558; NsEucl=0.878; NSW=0.866; rcor=172; rNcor=78; rlogoDP=48; rNsEucl=106; rNSW=129; rank_mean=106.600; match_rank= a 0 0 0 0 200000 96677 0 780142 970588 11976 0 1e+06 235650 84848 0 0 c 0 0 0 0 296970 459215 200000 174941 0 0 41995 0 196375 372727 0 0 g 0 0 0 0 339394 347432 0 44917 29412 0 91864 0 447130 269697 0 0 t 0 0 0 0 163636 96677 800000 0 0 988024 866141 0 120846 272727 0 0
HOXD3_2_shift4 (HOXD3_2)		0.711	0.533	3.131	0.885	0.880	154	68	141	82	90	107.000		; cluster_5 versus HOXD3_2; m=58/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 107; ----rsyaATTArs-- ; cor=0.711; Ncor=0.533; logoDP=3.131; NsEucl=0.885; NSW=0.880; rcor=154; rNcor=68; rlogoDP=141; rNsEucl=82; rNSW=90; rank_mean=107.000; match_rank= a 0 0 0 0 319738 178441 55744 628663 794101 20408 42127 897385 329694 182083 0 0 c 0 0 0 0 206118 297160 343304 209249 67669 0 41601 18301 211063 315368 0 0 g 0 0 0 0 298616 348871 10877 85165 44534 45578 193260 13072 310771 268026 0 0 t 0 0 0 0 175528 175528 590075 76923 93696 934014 723012 71242 148472 234523 0 0
SOX14_1_shift4 (SOX14_1)		0.701	0.482	4.075	0.896	0.881	178	123	116	36	85	107.600		; cluster_5 versus SOX14_1; m=59/73; ncol2=16; w=-1; offset=-1; strand=D; shift=4; score= 107.6; ----khtaATTATAAT ; cor=0.701; Ncor=0.482; logoDP=4.075; NsEucl=0.896; NSW=0.881; rcor=178; rNcor=123; rlogoDP=116; rNsEucl=36; rNSW=85; rank_mean=107.600; match_rank= a 0 0 0 0 193172 269798 215773 580839 904889 92628 192085 789459 16188 772459 860764 50334 c 0 0 0 0 139618 305700 216827 104549 34236 15755 17813 10913 183440 17642 30853 10542 g 0 0 0 0 364670 121123 189842 88691 10542 30853 17642 183440 10913 17813 15755 34236 t 0 0 0 0 302541 303378 377558 225921 50334 860764 772459 16188 789459 192085 92628 904889
PDX1_3_shift5 (PDX1_3)		0.762	0.416	4.508	0.860	0.882	46	172	90	154	80	108.400		; cluster_5 versus PDX1_3; m=60/73; ncol2=6; w=0; offset=0; strand=D; shift=5; score= 108.4; -----c-AATk----- ; cor=0.762; Ncor=0.416; logoDP=4.508; NsEucl=0.860; NSW=0.882; rcor=46; rNcor=172; rlogoDP=90; rNsEucl=154; rNSW=80; rank_mean=108.400; match_rank= a 0 0 0 0 0 32258 0 1e+06 1e+06 0 32258 0 0 0 0 0 c 0 0 0 0 0 612903 0 0 0 0 32258 0 0 0 0 0 g 0 0 0 0 0 161290 0 0 0 32258 322581 0 0 0 0 0 t 0 0 0 0 0 193548 0 0 0 967742 612903 0 0 0 0 0
MEOX2_4_shift5 (MEOX2_4)		0.724	0.526	4.288	0.873	0.871	123	76	102	126	117	108.800		; cluster_5 versus MEOX2_4; m=61/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 108.8; -----kTAATkAc--- ; cor=0.724; Ncor=0.526; logoDP=4.288; NsEucl=0.873; NSW=0.871; rcor=123; rNcor=76; rlogoDP=102; rNsEucl=126; rNSW=117; rank_mean=108.800; match_rank= a 0 0 0 0 0 212888 23875 860856 980605 0 5581 807765 238409 0 0 0 c 0 0 0 0 0 205657 130883 0 13973 47304 57206 4638 312846 0 0 0 g 0 0 0 0 0 296682 37616 100513 0 10222 319514 143103 249468 0 0 0 t 0 0 0 0 0 284772 807626 38631 5422 942474 617699 44494 199277 0 0 0
VSX1_2_shift5 (VSX1_2)		0.724	0.527	4.439	0.872	0.869	122	75	95	129	124	109.000		; cluster_5 versus VSX1_2; m=62/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 109; -----yTAATTAb--- ; cor=0.724; Ncor=0.527; logoDP=4.439; NsEucl=0.872; NSW=0.869; rcor=122; rNcor=75; rlogoDP=95; rNsEucl=129; rNSW=124; rank_mean=109.000; match_rank= a 0 0 0 0 0 50776 96070 886769 970261 12245 55381 722031 193501 0 0 0 c 0 0 0 0 0 567734 163832 40902 11009 14168 46932 27451 261956 0 0 0 g 0 0 0 0 0 37679 29930 36132 12296 7333 60685 177528 269545 0 0 0 t 0 0 0 0 0 343811 710168 36197 6434 966254 837002 72990 274998 0 0 0
UNCX_5_shift5 (UNCX_5)		0.721	0.525	4.496	0.872	0.869	132	82	91	132	127	112.800		; cluster_5 versus UNCX_5; m=63/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 112.8; -----ytAATTAm--- ; cor=0.721; Ncor=0.525; logoDP=4.496; NsEucl=0.872; NSW=0.869; rcor=132; rNcor=82; rlogoDP=91; rNsEucl=132; rNSW=127; rank_mean=112.800; match_rank= a 0 0 0 0 0 35738 102897 883588 984685 16484 48970 702675 338159 0 0 0 c 0 0 0 0 0 513861 146628 44227 5457 10932 78232 80141 255943 0 0 0 g 0 0 0 0 0 30060 124818 47860 6161 1909 37623 159025 212869 0 0 0 t 0 0 0 0 0 420341 625657 24325 3697 970675 835175 58159 193029 0 0 0
NKX6-2_3_shift5 (NKX6-2_3)		0.721	0.524	4.061	0.873	0.871	134	84	117	125	116	115.200		; cluster_5 versus NKX6-2_3; m=64/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 115.2; -----symATTAa--- ; cor=0.721; Ncor=0.524; logoDP=4.061; NsEucl=0.873; NSW=0.871; rcor=134; rNcor=84; rlogoDP=117; rNsEucl=125; rNSW=116; rank_mean=115.200; match_rank= a 0 0 0 0 0 198627 56020 503057 947602 29920 102038 912179 526618 0 0 0 c 0 0 0 0 0 320676 374313 335888 15514 0 92322 17824 182582 0 0 0 g 0 0 0 0 0 276102 38908 46655 9559 0 22781 37335 87673 0 0 0 t 0 0 0 0 0 204595 530759 114400 27325 970080 782859 32662 203127 0 0 0
POU2F2_known14_rc_shift2 (POU2F2_known14_rc)		0.703	0.483	1.232	0.896	0.881	171	120	160	37	88	115.200		; cluster_5 versus POU2F2_known14_rc; m=65/73; ncol2=16; w=-3; offset=-3; strand=R; shift=2; score= 115.2; --wamyTAATTAwywh ; cor=0.703; Ncor=0.483; logoDP=1.232; NsEucl=0.896; NSW=0.881; rcor=171; rNcor=120; rlogoDP=160; rNsEucl=37; rNSW=88; rank_mean=115.200; match_rank= a 0 0 317954 542709 285569 146780 57612 858308 982610 16411 7375 948333 419488 142553 367951 260385 c 0 0 117968 73106 438102 316162 4216 102898 4794 2679 8403 4507 19064 310736 85023 312745 g 0 0 52882 175267 169218 46638 9777 21021 1638 3033 93706 8174 240495 95745 242793 118740 t 0 0 511195 208918 107111 490420 928395 17772 10958 977877 890516 38986 320953 450966 304233 308131
VSX2_2_shift5 (VSX2_2)		0.712	0.518	5.063	0.867	0.858	152	90	59	143	137	116.200		; cluster_5 versus VSX2_2; m=66/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 116.2; -----yTAATTAg--- ; cor=0.712; Ncor=0.518; logoDP=5.063; NsEucl=0.867; NSW=0.858; rcor=152; rNcor=90; rlogoDP=59; rNsEucl=143; rNSW=137; rank_mean=116.200; match_rank= a 0 0 0 0 0 29085 60077 923617 978044 8307 40520 800383 209356 0 0 0 c 0 0 0 0 0 650774 151583 26553 8782 13094 36701 18605 234847 0 0 0 g 0 0 0 0 0 30311 20192 22942 8712 6477 28934 122240 310522 0 0 0 t 0 0 0 0 0 289830 768148 26888 4462 972122 893845 58772 245275 0 0 0
PAX4_8_shift5 (PAX4_8)		0.709	0.516	5.614	0.866	0.856	159	94	46	145	140	116.800		; cluster_5 versus PAX4_8; m=67/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 116.8; -----ctAATTAg--- ; cor=0.709; Ncor=0.516; logoDP=5.614; NsEucl=0.866; NSW=0.856; rcor=159; rNcor=94; rlogoDP=46; rNsEucl=145; rNSW=140; rank_mean=116.800; match_rank= a 0 0 0 0 0 70881 107209 985207 1e+06 0 48387 748315 243112 0 0 0 c 0 0 0 0 0 637932 55453 5917 0 0 29570 200000 150729 0 0 0 g 0 0 0 0 0 90038 221811 0 0 14793 26882 24719 539708 0 0 0 t 0 0 0 0 0 201149 615527 8876 0 985207 895161 26966 66451 0 0 0
MEOX2_1_shift4 (MEOX2_1)		0.701	0.526	3.713	0.882	0.875	177	80	132	91	111	118.200		; cluster_5 versus MEOX2_1; m=68/73; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score= 118.2; ----rsTaATtAwc-- ; cor=0.701; Ncor=0.526; logoDP=3.713; NsEucl=0.882; NSW=0.875; rcor=177; rNcor=80; rlogoDP=132; rNsEucl=91; rNSW=111; rank_mean=118.200; match_rank= a 0 0 0 0 338460 108933 47241 649671 939094 3139 31916 813392 402591 247315 0 0 c 0 0 0 0 159681 298614 162561 244014 30924 1569 167308 12203 141245 300681 0 0 g 0 0 0 0 285553 500484 20646 81881 10674 6980 137803 139327 170748 238539 0 0 t 0 0 0 0 216307 91969 769552 24434 19308 988312 662973 35078 285416 213465 0 0
LMX1B_3_shift5 (LMX1B_3)		0.715	0.520	4.274	0.871	0.867	148	89	103	133	128	120.200		; cluster_5 versus LMX1B_3; m=69/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 120.2; -----yyAATTAm--- ; cor=0.715; Ncor=0.520; logoDP=4.274; NsEucl=0.871; NSW=0.867; rcor=148; rNcor=89; rlogoDP=103; rNsEucl=133; rNSW=128; rank_mean=120.200; match_rank= a 0 0 0 0 0 57183 0 798441 818493 0 102564 880835 417598 0 0 0 c 0 0 0 0 0 401674 425333 197105 101598 11034 61772 0 294693 0 0 0 g 0 0 0 0 0 242678 45333 4454 0 0 0 62654 104749 0 0 0 t 0 0 0 0 0 298466 529334 0 79909 988966 835664 56511 182961 0 0 0
NKX6-2_2_shift5 (NKX6-2_2)		0.709	0.516	4.617	0.870	0.864	162	96	86	137	131	122.400		; cluster_5 versus NKX6-2_2; m=70/73; ncol2=8; w=0; offset=0; strand=D; shift=5; score= 122.4; -----symATTAa--- ; cor=0.709; Ncor=0.516; logoDP=4.617; NsEucl=0.870; NSW=0.864; rcor=162; rNcor=96; rlogoDP=86; rNsEucl=137; rNSW=131; rank_mean=122.400; match_rank= a 0 0 0 0 0 173520 38633 491219 982674 17009 84190 954576 522396 0 0 0 c 0 0 0 0 0 341674 366498 352759 10654 0 89397 9409 195324 0 0 0 g 0 0 0 0 0 289219 28157 41871 0 0 20606 28592 91556 0 0 0 t 0 0 0 0 0 195587 566712 114151 6672 982991 805807 7423 190724 0 0 0
LHX3_1_shift3 (LHX3_1)		0.701	0.431	6.001	0.859	0.841	175	157	32	155	162	136.200		; cluster_5 versus LHX3_1; m=71/73; ncol2=10; w=-2; offset=-2; strand=D; shift=3; score= 136.2; ---AwT-AATTAa--- ; cor=0.701; Ncor=0.431; logoDP=6.001; NsEucl=0.859; NSW=0.841; rcor=175; rNcor=157; rlogoDP=32; rNsEucl=155; rNSW=162; rank_mean=136.200; match_rank= a 0 0 0 800000 550000 0 0 1e+06 1e+06 0 25000 850000 575000 0 0 0 c 0 0 0 125000 50000 0 0 0 0 25000 50000 25000 100000 0 0 0 g 0 0 0 50000 125000 100000 0 0 0 0 25000 0 150000 0 0 0 t 0 0 0 25000 275000 900000 0 0 0 975000 900000 125000 175000 0 0 0
STAT_known8_rc_shift4 (STAT_known8_rc)		0.728	0.425	0.378	0.869	0.880	112	165	172	140	94	136.600		; cluster_5 versus STAT_known8_rc; m=72/73; ncol2=8; w=-1; offset=-1; strand=R; shift=4; score= 136.6; ----wrGAAwtr---- ; cor=0.728; Ncor=0.425; logoDP=0.378; NsEucl=0.869; NSW=0.880; rcor=112; rNcor=165; rlogoDP=172; rNsEucl=140; rNSW=94; rank_mean=136.600; match_rank= a 0 0 0 0 290000 300000 20000 828283 939394 455446 188119 333333 0 0 0 0 c 0 0 0 0 200000 80000 20000 20202 20202 128713 168317 171717 0 0 0 0 g 0 0 0 0 220000 570000 930000 40404 20202 49505 108911 262626 0 0 0 0 t 0 0 0 0 290000 50000 30000 111111 20202 366337 534653 232323 0 0 0 0
STAT_known9_rc_shift4 (STAT_known9_rc)		0.724	0.423	0.276	0.868	0.878	120	166	177	141	98	140.400		; cluster_5 versus STAT_known9_rc; m=73/73; ncol2=8; w=-1; offset=-1; strand=R; shift=4; score= 140.4; ----tgGAAwwa---- ; cor=0.724; Ncor=0.423; logoDP=0.276; NsEucl=0.868; NSW=0.878; rcor=120; rNcor=166; rlogoDP=177; rNsEucl=141; rNSW=98; rank_mean=140.400; match_rank= a 0 0 0 0 247525 141414 30000 898990 920000 440000 250000 420000 0 0 0 0 c 0 0 0 0 227723 141414 40000 20202 20000 190000 210000 130000 0 0 0 0 g 0 0 0 0 178218 535354 820000 30303 30000 40000 30000 220000 0 0 0 0 t 0 0 0 0 346535 181818 110000 50505 30000 330000 510000 230000 0 0 0 0

One-to-n matrix alignment; reference matrix: cluster_10_shift3 ; 4 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_10_shift3 (cluster_10)														; cluster_10; m=0 (reference); ncol1=10; shift=3; ncol=13; ---aaATATATtt ; Alignment reference a 0 0 0 6 8 14 0 14 0 14 0 2 3 c 0 0 0 2 2 0 0 0 0 0 0 2 3 g 0 0 0 3 2 0 0 0 0 0 0 2 2 t 0 0 0 3 2 0 14 0 14 0 14 8 6
TATA_known6_shift0 (TATA_known6)		0.815	0.509	5.648	0.910	0.918	11	99	44	13	11	35.600	8	; cluster_10 versus TATA_known6; m=1/3; ncol2=16; w=-3; offset=-3; strand=D; shift=0; score= 35.6; yywwwwTATAwww ; cor=0.815; Ncor=0.509; logoDP=5.648; NsEucl=0.910; NSW=0.918; rcor=11; rNcor=99; rlogoDP=44; rNsEucl=13; rNSW=11; rank_mean=35.600; match_rank=8 a 221327 124324 291647 381252 274538 652158 82858 767761 228110 905892 336043 666622 468941 c 269618 399377 232852 98493 38963 5017 7221 2085 2044 4029 6783 19877 109491 g 215905 122464 122870 105716 19877 6783 4029 2044 2085 7221 5017 38963 97950 t 293150 353835 352630 414539 666622 336043 905892 228110 767761 82858 652158 274538 323618
FOXL1_2_shift2 (FOXL1_2)		0.843	0.537	4.621	0.890	0.916	2	63	84	50	12	42.200	12	; cluster_10 versus FOXL1_2; m=2/3; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score= 42.2; --wwdayATA--- ; cor=0.843; Ncor=0.537; logoDP=4.621; NsEucl=0.890; NSW=0.916; rcor=2; rNcor=63; rlogoDP=84; rNsEucl=50; rNSW=12; rank_mean=42.200; match_rank=12 a 0 0 304348 434783 260870 565217 173913 913043 0 956522 0 0 0 c 0 0 43478 173913 130435 173913 434783 0 86957 43478 0 0 0 g 0 0 173913 86957 260870 173913 86957 86957 0 0 0 0 0 t 0 0 478261 304348 347826 86957 304348 0 913043 0 0 0 0
POU6F1_1_shift0 (POU6F1_1)		0.747	0.460	5.978	0.869	0.863	71	138	33	139	133	102.800		; cluster_10 versus POU6F1_1; m=3/3; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score= 102.8; GCATAAw-TAT-- ; cor=0.747; Ncor=0.460; logoDP=5.978; NsEucl=0.869; NSW=0.863; rcor=71; rNcor=138; rlogoDP=33; rNsEucl=139; rNSW=133; rank_mean=102.800; match_rank= a 187500 125000 875000 125000 812500 812500 437500 0 187500 1e+06 0 0 0 c 62500 812500 0 0 62500 62500 0 0 0 0 0 0 0 g 750000 0 0 0 0 125000 0 0 0 0 62500 0 0 t 0 62500 125000 875000 125000 0 562500 0 812500 0 937500 0 0

One-to-n matrix alignment; reference matrix: cluster_6_shift2 ; 8 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_6_shift2 (cluster_6)														; cluster_6; m=0 (reference); ncol1=12; shift=2; ncol=14; --yGgGAGGCyGsa ; Alignment reference a 0 0 78 22 102 31 750 0 0 0 41 108 99 220 c 0 0 148 15 170 175 0 0 0 750 188 16 112 66 g 0 0 14 305 462 542 0 750 750 0 80 622 186 100 t 0 0 108 6 16 2 0 0 0 0 441 4 5 16
GTF2I_1_shift0 (GTF2I_1)		0.837	0.418	6.388	0.892	0.919	5	171	27	45	10	51.600	22	; cluster_6 versus GTF2I_1; m=1/7; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score= 51.6; rGAgGkAGG----- ; cor=0.837; Ncor=0.418; logoDP=6.388; NsEucl=0.892; NSW=0.919; rcor=5; rNcor=171; rlogoDP=27; rNsEucl=45; rNSW=10; rank_mean=51.600; match_rank=22 a 400000 0 800000 0 0 0 1e+06 0 0 0 0 0 0 0 c 0 0 0 200000 0 0 0 0 0 0 0 0 0 0 g 400000 1e+06 200000 600000 800000 600000 0 1e+06 1e+06 0 0 0 0 0 t 200000 0 0 200000 200000 400000 0 0 0 0 0 0 0 0
AP1_disc10_shift3 (AP1_disc10)		0.726	0.605	3.929	0.894	0.887	117	8	124	41	65	71.000	47	; cluster_6 versus AP1_disc10; m=2/7; ncol2=10; w=0; offset=1; strand=D; shift=3; score= 71; ---GssgrGssGs- ; cor=0.726; Ncor=0.605; logoDP=3.929; NsEucl=0.894; NSW=0.887; rcor=117; rNcor=8; rlogoDP=124; rNsEucl=41; rNSW=65; rank_mean=71.000; match_rank=47 a 0 0 0 0 155951 84815 225718 274966 0 0 225718 0 41040 0 c 0 0 0 244870 343365 363885 195622 187415 0 536252 272230 247606 433653 0 g 0 0 0 755130 500684 525308 430917 537619 1e+06 463748 410397 752394 525307 0 t 0 0 0 0 0 25992 147743 0 0 0 91655 0 0 0
CACBP_1_shift5 (CACBP_1)		0.726	0.545	5.641	0.880	0.871	118	48	45	100	119	86.000		; cluster_6 versus CACBP_1; m=3/7; ncol2=9; w=0; offset=3; strand=D; shift=5; score= 86; -----RrGGsWGGS ; cor=0.726; Ncor=0.545; logoDP=5.641; NsEucl=0.880; NSW=0.871; rcor=118; rNcor=48; rlogoDP=45; rNsEucl=100; rNSW=119; rank_mean=86.000; match_rank= a 0 0 0 0 0 285714 571429 0 0 0 285714 0 0 0 c 0 0 0 0 0 0 0 0 0 428571 0 0 0 285714 g 0 0 0 0 0 714286 428571 857143 1e+06 571429 0 1e+06 1e+06 714286 t 0 0 0 0 0 0 0 142857 0 0 714286 0 0 0
MYC_disc10_shift5 (MYC_disc10)		0.726	0.467	3.191	0.889	0.889	116	134	140	63	57	102.000		; cluster_6 versus MYC_disc10; m=4/7; ncol2=11; w=0; offset=3; strand=D; shift=5; score= 102; -----swGsvvgsg ; cor=0.726; Ncor=0.467; logoDP=3.191; NsEucl=0.889; NSW=0.889; rcor=116; rNcor=134; rlogoDP=140; rNsEucl=63; rNSW=57; rank_mean=102.000; match_rank= a 0 0 0 0 0 0 355152 0 0 256970 256970 117576 32727 241212 c 0 0 0 0 0 404848 201212 0 329697 376970 273939 218182 347879 141818 g 0 0 0 0 0 595152 150303 1e+06 670303 351515 310303 578181 567273 469091 t 0 0 0 0 0 0 293333 0 0 14545 158788 86061 52121 147879
STAT_disc6_shift6 (STAT_disc6)		0.747	0.459	6.741	0.865	0.854	72	139	21	148	146	105.200		; cluster_6 versus STAT_disc6; m=5/7; ncol2=9; w=0; offset=4; strand=D; shift=6; score= 105.2; ------AGGsAGGA ; cor=0.747; Ncor=0.459; logoDP=6.741; NsEucl=0.865; NSW=0.854; rcor=72; rNcor=139; rlogoDP=21; rNsEucl=148; rNSW=146; rank_mean=105.200; match_rank= a 0 0 0 0 0 0 1e+06 0 0 0 1e+06 107143 0 1e+06 c 0 0 0 0 0 0 0 0 142857 642857 0 0 0 0 g 0 0 0 0 0 0 0 1e+06 857143 357143 0 892857 1e+06 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SP1_known1_shift5 (SP1_known1)		0.701	0.485	4.982	0.883	0.876	179	118	64	86	105	110.400		; cluster_6 versus SP1_known1; m=6/7; ncol2=10; w=0; offset=3; strand=D; shift=5; score= 110.4; -----grGGCrkGg ; cor=0.701; Ncor=0.485; logoDP=4.982; NsEucl=0.883; NSW=0.876; rcor=179; rNcor=118; rlogoDP=64; rNsEucl=86; rNSW=105; rank_mean=110.400; match_rank= a 0 0 0 0 0 181818 272727 0 0 0 272727 0 90909 90909 c 0 0 0 0 0 90909 90909 0 0 727273 0 90909 0 181818 g 0 0 0 0 0 545455 545455 1e+06 1e+06 181818 545455 636364 727273 636364 t 0 0 0 0 0 181818 90909 0 0 90909 181818 272727 181818 90909
TEAD2_1_shift5 (TEAD2_1)		0.721	0.421	5.486	0.854	0.851	133	169	52	162	150	133.200		; cluster_6 versus TEAD2_1; m=7/7; ncol2=7; w=0; offset=3; strand=D; shift=5; score= 133.2; -----GvGGmGG-- ; cor=0.721; Ncor=0.421; logoDP=5.486; NsEucl=0.854; NSW=0.851; rcor=133; rNcor=169; rlogoDP=52; rNsEucl=162; rNSW=150; rank_mean=133.200; match_rank= a 0 0 0 0 0 0 307692 0 0 384615 0 0 0 0 c 0 0 0 0 0 0 384615 0 0 615385 153846 0 0 0 g 0 0 0 0 0 846154 307692 923077 1e+06 0 846154 1e+06 0 0 t 0 0 0 0 0 153846 0 76923 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: cluster_4_shift1 ; 7 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_4_shift1 (cluster_4)														; cluster_4; m=0 (reference); ncol1=13; shift=1; ncol=14; -sGCtCCTCMCTyC ; Alignment reference a 0 18 83 137 1653 1 0 29 0 4672 28 179 44 16 c 0 716 27 6268 964 6599 6703 11 6620 1806 6518 946 1730 4498 g 0 1138 1714 122 273 103 1 15 75 53 118 5 312 122 t 0 23 71 179 3816 3 2 6651 11 175 42 3681 2725 175
ZNF263_disc1_rc_shift2 (ZNF263_disc1_rc)		0.793	0.610	0.929	0.895	0.889	18	7	162	39	58	56.800	29	; cluster_4 versus ZNF263_disc1_rc; m=1/6; ncol2=10; w=0; offset=1; strand=R; shift=2; score= 56.8; --cCTCCTCCCy-- ; cor=0.793; Ncor=0.610; logoDP=0.929; NsEucl=0.895; NSW=0.889; rcor=18; rNcor=7; rlogoDP=162; rNsEucl=39; rNSW=58; rank_mean=56.800; match_rank=29 a 0 0 176000 0 4000 0 8000 4000 0 0 28000 108000 0 0 c 0 0 560000 836000 32000 912000 976000 0 864000 920000 836000 432000 0 0 g 0 0 208000 72000 0 32000 0 0 44000 0 0 60000 0 0 t 0 0 56000 92000 964000 56000 16000 996000 92000 80000 136000 400000 0 0
IRF_disc5_rc_shift6 (IRF_disc5_rc)		0.841	0.449	0.463	0.900	0.919	3	150	170	29	9	72.200		; cluster_4 versus IRF_disc5_rc; m=2/6; ncol2=10; w=0; offset=5; strand=R; shift=6; score= 72.2; ------yyCwsYTC ; cor=0.841; Ncor=0.449; logoDP=0.463; NsEucl=0.900; NSW=0.919; rcor=3; rNcor=150; rlogoDP=170; rNsEucl=29; rNSW=9; rank_mean=72.200; match_rank= a 0 0 0 0 0 0 0 0 0 561151 0 0 0 0 c 0 0 0 0 0 0 402878 366906 1e+06 129496 618705 302158 244604 1e+06 g 0 0 0 0 0 0 151079 0 0 0 381295 0 0 0 t 0 0 0 0 0 0 446043 633094 0 309353 0 697842 755396 0
GTF2I_1_rc_shift5 (GTF2I_1_rc)		0.767	0.531	0.262	0.882	0.875	37	71	178	89	108	96.600		; cluster_4 versus GTF2I_1_rc; m=3/6; ncol2=9; w=0; offset=4; strand=R; shift=5; score= 96.6; -----CCTmCcTCy ; cor=0.767; Ncor=0.531; logoDP=0.262; NsEucl=0.882; NSW=0.875; rcor=37; rNcor=71; rlogoDP=178; rNsEucl=89; rNSW=108; rank_mean=96.600; match_rank= a 0 0 0 0 0 0 0 0 400000 200000 200000 0 0 200000 c 0 0 0 0 0 1e+06 1e+06 0 600000 800000 600000 200000 1e+06 400000 g 0 0 0 0 0 0 0 0 0 0 200000 0 0 0 t 0 0 0 0 0 0 0 1e+06 0 0 0 800000 0 400000
TCF12_disc3_rc_shift0 (TCF12_disc3_rc)		0.816	0.408	2.579	0.877	0.893	10	175	145	113	43	97.200		; cluster_4 versus TCF12_disc3_rc; m=4/6; ncol2=8; w=-1; offset=-1; strand=R; shift=0; score= 97.2; sCGCmcCT------ ; cor=0.816; Ncor=0.408; logoDP=2.579; NsEucl=0.877; NSW=0.893; rcor=10; rNcor=175; rlogoDP=145; rNsEucl=113; rNSW=43; rank_mean=97.200; match_rank= a 0 0 0 0 615385 0 0 0 0 0 0 0 0 0 c 576923 1e+06 0 1e+06 384615 615385 1e+06 0 0 0 0 0 0 0 g 346154 0 1e+06 0 0 230769 0 0 0 0 0 0 0 0 t 76923 0 0 0 0 153846 0 1e+06 0 0 0 0 0 0
MAZ_1_rc_shift4 (MAZ_1_rc)		0.716	0.441	0.343	0.859	0.840	144	152	175	156	165	158.400		; cluster_4 versus MAZ_1_rc; m=5/6; ncol2=8; w=0; offset=3; strand=R; shift=4; score= 158.4; ----CCCTCCCy-- ; cor=0.716; Ncor=0.441; logoDP=0.343; NsEucl=0.859; NSW=0.840; rcor=144; rNcor=152; rlogoDP=175; rNsEucl=156; rNSW=165; rank_mean=158.400; match_rank= a 0 0 0 0 0 0 0 0 0 83333 0 83333 0 0 c 0 0 0 0 1e+06 750000 1e+06 0 916667 916667 1e+06 666667 0 0 g 0 0 0 0 0 83333 0 166667 83333 0 0 0 0 0 t 0 0 0 0 0 166667 0 833333 0 0 0 250000 0 0
MZF1_1_rc_shift4 (MZF1_1_rc)		0.704	0.433	0.146	0.863	0.850	167	155	180	153	152	161.400		; cluster_4 versus MZF1_1_rc; m=6/6; ncol2=8; w=0; offset=3; strand=R; shift=4; score= 161.4; ----TCCCCmcy-- ; cor=0.704; Ncor=0.433; logoDP=0.146; NsEucl=0.863; NSW=0.850; rcor=167; rNcor=155; rlogoDP=180; rNsEucl=153; rNSW=152; rank_mean=161.400; match_rank= a 0 0 0 0 0 0 50000 50000 0 450000 150000 150000 0 0 c 0 0 0 0 50000 1e+06 950000 900000 1e+06 250000 550000 300000 0 0 g 0 0 0 0 50000 0 0 0 0 150000 100000 150000 0 0 t 0 0 0 0 900000 0 0 50000 0 150000 200000 400000 0 0

One-to-n matrix alignment; reference matrix: cluster_9_shift7 ; 27 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_9_shift7 (cluster_9)														; cluster_9; m=0 (reference); ncol1=10; shift=7; ncol=17; -------GTAGACATGG ; Alignment reference a 0 0 0 0 0 0 0 15 2 173 0 173 0 173 0 3 7 c 0 0 0 0 0 0 0 2 20 0 0 0 173 0 0 4 1 g 0 0 0 0 0 0 0 136 21 0 173 0 0 0 0 149 135 t 0 0 0 0 0 0 0 20 130 0 0 0 0 0 173 17 30
FOXO3_4_shift7 (FOXO3_4)		0.782	0.558	10.933	0.882	0.860	28	29	1	93	135	57.200	31	; cluster_9 versus FOXO3_4; m=1/26; ncol2=14; w=0; offset=0; strand=D; shift=7; score= 57.2; -------GTAAACATG- ; cor=0.782; Ncor=0.558; logoDP=10.933; NsEucl=0.882; NSW=0.860; rcor=28; rNcor=29; rlogoDP=1; rNsEucl=93; rNSW=135; rank_mean=57.200; match_rank=31 a 0 0 0 0 0 0 0 89645 9892 894736 998649 996021 0 992157 1850 2417 0 c 0 0 0 0 0 0 0 0 4496 102632 1351 3979 996269 0 0 0 0 g 0 0 0 0 0 0 0 910355 3597 0 0 0 0 0 0 997583 0 t 0 0 0 0 0 0 0 0 982015 2632 0 0 3731 7843 998150 0 0
FOXO1_4_shift7 (FOXO1_4)		0.767	0.548	9.506	0.882	0.860	39	46	3	92	134	62.800	37	; cluster_9 versus FOXO1_4; m=2/26; ncol2=14; w=0; offset=0; strand=D; shift=7; score= 62.8; -------rTAAACATG- ; cor=0.767; Ncor=0.548; logoDP=9.506; NsEucl=0.882; NSW=0.860; rcor=39; rNcor=46; rlogoDP=3; rNsEucl=92; rNSW=134; rank_mean=62.800; match_rank=37 a 0 0 0 0 0 0 0 306931 96491 834808 971154 993630 0 977987 6944 32491 0 c 0 0 0 0 0 0 0 21782 10965 165192 25641 3185 940559 3145 2315 0 0 g 0 0 0 0 0 0 0 669307 6579 0 0 0 3497 6289 0 965704 0 t 0 0 0 0 0 0 0 1980 885965 0 3205 3185 55944 12579 990741 1805 0
FOXO6_2_shift7 (FOXO6_2)		0.768	0.538	7.483	0.854	0.851	36	61	11	163	151	84.400		; cluster_9 versus FOXO6_2; m=3/26; ncol2=7; w=0; offset=0; strand=D; shift=7; score= 84.4; -------GTAAACA--- ; cor=0.768; Ncor=0.538; logoDP=7.483; NsEucl=0.854; NSW=0.851; rcor=36; rNcor=61; rlogoDP=11; rNsEucl=163; rNSW=151; rank_mean=84.400; match_rank= a 0 0 0 0 0 0 0 170602 21356 858907 969501 1e+06 0 998153 0 0 0 c 0 0 0 0 0 0 0 0 0 140237 26911 0 944094 0 0 0 0 g 0 0 0 0 0 0 0 829398 4438 856 0 0 4166 1847 0 0 0 t 0 0 0 0 0 0 0 0 974206 0 3588 0 51740 0 0 0 0
SMAD3_3_shift4 (SMAD3_3)		0.800	0.431	7.871	0.864	0.871	15	159	8	150	118	90.000		; cluster_9 versus SMAD3_3; m=4/26; ncol2=10; w=-3; offset=-3; strand=D; shift=4; score= 90; ----yGTCTAGACA--- ; cor=0.800; Ncor=0.431; logoDP=7.871; NsEucl=0.864; NSW=0.871; rcor=15; rNcor=159; rlogoDP=8; rNsEucl=150; rNSW=118; rank_mean=90.000; match_rank= a 0 0 0 0 134076 5642 27793 2559 0 985324 0 930685 5648 698340 0 0 0 c 0 0 0 0 442643 4513 7825 992607 12892 8467 2854 53053 985880 86817 0 0 0 g 0 0 0 0 21055 984767 22396 3128 8688 6209 996290 1333 2824 63213 0 0 0 t 0 0 0 0 402227 5078 941986 1706 978420 0 856 14929 5648 151630 0 0 0
FOXI1_3_shift7 (FOXI1_3)		0.759	0.532	6.846	0.852	0.846	49	69	17	169	156	92.000		; cluster_9 versus FOXI1_3; m=5/26; ncol2=7; w=0; offset=0; strand=D; shift=7; score= 92; -------GTAAACA--- ; cor=0.759; Ncor=0.532; logoDP=6.846; NsEucl=0.852; NSW=0.846; rcor=49; rNcor=69; rlogoDP=17; rNsEucl=169; rNSW=156; rank_mean=92.000; match_rank= a 0 0 0 0 0 0 0 105967 13847 899687 995575 977707 25363 992901 0 0 0 c 0 0 0 0 0 0 0 6687 11228 93880 4425 4345 836027 2302 0 0 0 g 0 0 0 0 0 0 0 887346 6549 6433 0 5479 7754 4797 0 0 0 t 0 0 0 0 0 0 0 0 968376 0 0 12469 130856 0 0 0 0
FOXO3_3_shift6 (FOXO3_3)		0.767	0.488	7.186	0.858	0.858	38	115	13	159	136	92.200		; cluster_9 versus FOXO3_3; m=6/26; ncol2=8; w=-1; offset=-1; strand=D; shift=6; score= 92.2; ------kGTAAACA--- ; cor=0.767; Ncor=0.488; logoDP=7.186; NsEucl=0.858; NSW=0.858; rcor=38; rNcor=115; rlogoDP=13; rNsEucl=159; rNSW=136; rank_mean=92.200; match_rank= a 0 0 0 0 0 0 0 76923 230769 1e+06 923077 1e+06 0 923077 0 0 0 c 0 0 0 0 0 0 0 153846 0 0 76923 0 923077 0 0 0 0 g 0 0 0 0 0 0 384615 769231 76923 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 615385 0 692308 0 0 0 76923 76923 0 0 0
FOXG1_5_shift7 (FOXG1_5)		0.755	0.528	6.838	0.853	0.848	57	73	18	166	153	93.400		; cluster_9 versus FOXG1_5; m=7/26; ncol2=7; w=0; offset=0; strand=D; shift=7; score= 93.4; -------GTAAACA--- ; cor=0.755; Ncor=0.528; logoDP=6.838; NsEucl=0.853; NSW=0.848; rcor=57; rNcor=73; rlogoDP=18; rNsEucl=166; rNSW=153; rank_mean=93.400; match_rank= a 0 0 0 0 0 0 0 220252 54655 898242 991466 1e+06 8227 995577 0 0 0 c 0 0 0 0 0 0 0 0 43847 101758 7846 0 820924 0 0 0 0 g 0 0 0 0 0 0 0 777532 16826 0 688 0 4114 4423 0 0 0 t 0 0 0 0 0 0 0 2216 884672 0 0 0 166735 0 0 0 0
FOXO3_5_shift7 (FOXO3_5)		0.727	0.582	8.178	0.852	0.824	115	13	6	170	179	96.600		; cluster_9 versus FOXO3_5; m=8/26; ncol2=8; w=0; offset=0; strand=D; shift=7; score= 96.6; -------GTAAACAw-- ; cor=0.727; Ncor=0.582; logoDP=8.178; NsEucl=0.852; NSW=0.824; rcor=115; rNcor=13; rlogoDP=6; rNsEucl=170; rNSW=179; rank_mean=96.600; match_rank= a 0 0 0 0 0 0 0 37975 0 960289 998124 981550 27273 979742 546551 0 0 c 0 0 0 0 0 0 0 0 0 28881 1876 18450 967272 20258 20690 0 0 g 0 0 0 0 0 0 0 962025 23853 9025 0 0 0 0 62069 0 0 t 0 0 0 0 0 0 0 0 976147 1805 0 0 5455 0 370690 0 0
FOXO6_1_shift7 (FOXO6_1)		0.735	0.525	9.220	0.872	0.837	102	81	5	128	170	97.200		; cluster_9 versus FOXO6_1; m=9/26; ncol2=14; w=0; offset=0; strand=D; shift=7; score= 97.2; -------GTAAACATGT ; cor=0.735; Ncor=0.525; logoDP=9.220; NsEucl=0.872; NSW=0.837; rcor=102; rNcor=81; rlogoDP=5; rNsEucl=128; rNSW=170; rank_mean=97.200; match_rank= a 0 0 0 0 0 0 0 173418 41963 805439 914062 960854 2904 933026 4323 23627 0 c 0 0 0 0 0 0 0 4430 30988 147490 46875 0 964182 6928 1441 1916 0 g 0 0 0 0 0 0 0 810760 21950 10460 10045 27284 968 12702 0 972541 1407 t 0 0 0 0 0 0 0 11392 905099 36611 29018 11862 31946 47344 994236 1916 998593
SMAD_2_shift4 (SMAD_2)		0.754	0.464	7.208	0.867	0.858	60	135	12	144	138	97.800		; cluster_9 versus SMAD_2; m=10/26; ncol2=11; w=-3; offset=-3; strand=D; shift=4; score= 97.8; ----tdksYAGACws-- ; cor=0.754; Ncor=0.464; logoDP=7.208; NsEucl=0.867; NSW=0.858; rcor=60; rNcor=135; rlogoDP=12; rNsEucl=144; rNSW=138; rank_mean=97.800; match_rank= a 0 0 0 0 200000 400000 100000 150000 0 1e+06 0 850000 0 550000 100000 0 0 c 0 0 0 0 200000 50000 150000 350000 750000 0 0 50000 1e+06 100000 300000 0 0 g 0 0 0 0 50000 300000 500000 300000 0 0 1e+06 100000 0 50000 400000 0 0 t 0 0 0 0 550000 250000 250000 200000 250000 0 0 0 0 300000 200000 0 0
FOXO4_4_shift7 (FOXO4_4)		0.749	0.524	6.315	0.852	0.847	67	83	28	168	155	100.200		; cluster_9 versus FOXO4_4; m=11/26; ncol2=7; w=0; offset=0; strand=D; shift=7; score= 100.2; -------GTAAACA--- ; cor=0.749; Ncor=0.524; logoDP=6.315; NsEucl=0.852; NSW=0.847; rcor=67; rNcor=83; rlogoDP=28; rNsEucl=168; rNSW=155; rank_mean=100.200; match_rank= a 0 0 0 0 0 0 0 236402 58326 804007 966745 981746 9024 988966 0 0 0 c 0 0 0 0 0 0 0 1841 11665 188219 26245 0 836782 1839 0 0 0 g 0 0 0 0 0 0 0 761757 20795 4784 3415 16429 5135 1839 0 0 0 t 0 0 0 0 0 0 0 0 909214 2990 3595 1825 149059 7356 0 0 0
TP53_2_shift9 (TP53_2)		0.753	0.502	4.862	0.865	0.854	62	107	71	149	147	107.200		; cluster_9 versus TP53_2; m=12/26; ncol2=10; w=0; offset=2; strand=D; shift=9; score= 107.2; ---------aGrCwTGy ; cor=0.753; Ncor=0.502; logoDP=4.862; NsEucl=0.865; NSW=0.854; rcor=62; rNcor=107; rlogoDP=71; rNsEucl=149; rNSW=147; rank_mean=107.200; match_rank= a 0 0 0 0 0 0 0 0 0 404040 204082 561224 0 535354 150000 0 0 c 0 0 0 0 0 0 0 0 0 131313 30612 30612 948980 80808 0 0 500000 g 0 0 0 0 0 0 0 0 0 232323 714286 408163 0 80808 30000 1e+06 0 t 0 0 0 0 0 0 0 0 0 232323 51020 0 51020 303030 820000 0 500000
FOXO1_3_shift7 (FOXO1_3)		0.709	0.567	6.610	0.854	0.828	160	22	24	164	176	109.200		; cluster_9 versus FOXO1_3; m=13/26; ncol2=8; w=0; offset=0; strand=D; shift=7; score= 109.2; -------rTAAACAw-- ; cor=0.709; Ncor=0.567; logoDP=6.610; NsEucl=0.854; NSW=0.828; rcor=160; rNcor=22; rlogoDP=24; rNsEucl=164; rNSW=176; rank_mean=109.200; match_rank= a 0 0 0 0 0 0 0 289239 103540 857431 910448 974144 0 979358 507326 0 0 c 0 0 0 0 0 0 0 26772 23380 131191 85288 0 922911 12232 107327 0 0 g 0 0 0 0 0 0 0 672440 17368 8701 1421 25856 7925 1529 79604 0 0 t 0 0 0 0 0 0 0 11549 855712 2677 2843 0 69164 6881 305743 0 0
FOXO4_3_rc_shift7 (FOXO4_3_rc)		0.722	0.516	9.251	0.868	0.826	130	95	4	142	178	109.800		; cluster_9 versus FOXO4_3_rc; m=14/26; ncol2=14; w=0; offset=0; strand=R; shift=7; score= 109.8; -------GTMAACATGT ; cor=0.722; Ncor=0.516; logoDP=9.251; NsEucl=0.868; NSW=0.826; rcor=130; rNcor=95; rlogoDP=4; rNsEucl=142; rNSW=178; rank_mean=109.800; match_rank= a 0 0 0 0 0 0 0 135246 35922 724160 979263 994526 0 972093 39254 37166 0 c 0 0 0 0 0 0 0 6148 27184 269499 13057 1564 977104 1550 3925 0 2049 g 0 0 0 0 0 0 0 857581 14563 0 6144 1564 0 3101 0 962834 0 t 0 0 0 0 0 0 0 1025 922331 6341 1536 2346 22896 23256 956821 0 997951
TP53_3_shift9 (TP53_3)		0.759	0.506	4.018	0.865	0.854	48	102	121	147	145	112.600		; cluster_9 versus TP53_3; m=15/26; ncol2=10; w=0; offset=2; strand=D; shift=9; score= 112.6; ---------rRrCAwGy ; cor=0.759; Ncor=0.506; logoDP=4.018; NsEucl=0.865; NSW=0.854; rcor=48; rNcor=102; rlogoDP=121; rNsEucl=147; rNSW=145; rank_mean=112.600; match_rank= a 0 0 0 0 0 0 0 0 0 543478 304348 543478 43478 695652 500000 65217 195652 c 0 0 0 0 0 0 0 0 0 65217 0 0 847826 43478 43478 0 326087 g 0 0 0 0 0 0 0 0 0 347826 695652 456522 86957 86957 43478 934783 108696 t 0 0 0 0 0 0 0 0 0 43478 0 0 21739 173913 413043 0 369565
TP53_6_rc_shift0 (TP53_6_rc)		0.722	0.425	6.643	0.878	0.852	127	164	23	104	149	113.400		; cluster_9 versus TP53_6_rc; m=16/26; ncol2=17; w=-7; offset=-7; strand=R; shift=0; score= 113.4; ACaTGTchyaGACwTGT ; cor=0.722; Ncor=0.425; logoDP=6.643; NsEucl=0.878; NSW=0.852; rcor=127; rNcor=164; rlogoDP=23; rNsEucl=104; rNSW=149; rank_mean=113.400; match_rank= a 893462 7973 645480 4659 388 14607 95002 319807 154428 386949 104394 874335 16357 508319 498 606 24246 c 5278 980938 110347 8067 0 154255 667652 261482 279148 184744 56162 2071 979327 42368 7719 0 91520 g 73287 9060 13503 2613 997827 2766 6786 109516 174794 188977 802051 114053 1817 5804 5976 999394 797 t 27973 2029 230670 984661 1785 828372 230560 309195 391629 239330 37393 9541 2499 443509 985807 0 883437
FOXA_disc1_shift4 (FOXA_disc1)		0.746	0.402	6.792	0.851	0.844	74	180	19	171	158	120.400		; cluster_9 versus FOXA_disc1; m=17/26; ncol2=10; w=-3; offset=-3; strand=D; shift=4; score= 120.4; ----wrwGYAAAYA--- ; cor=0.746; Ncor=0.402; logoDP=6.792; NsEucl=0.851; NSW=0.844; rcor=74; rNcor=180; rlogoDP=19; rNsEucl=171; rNSW=158; rank_mean=120.400; match_rank= a 0 0 0 0 491429 645714 514286 0 0 885714 931429 988571 0 1e+06 0 0 0 c 0 0 0 0 0 0 0 0 268571 114286 68571 11429 702857 0 0 0 0 g 0 0 0 0 0 354286 165714 1e+06 0 0 0 0 0 0 0 0 0 t 0 0 0 0 508571 0 320000 0 731429 0 0 0 297143 0 0 0 0
FOXL1_4_shift7 (FOXL1_4)		0.724	0.507	6.217	0.846	0.833	125	101	30	176	172	120.800		; cluster_9 versus FOXL1_4; m=18/26; ncol2=7; w=0; offset=0; strand=D; shift=7; score= 120.8; -------rTAAACA--- ; cor=0.724; Ncor=0.507; logoDP=6.217; NsEucl=0.846; NSW=0.833; rcor=125; rNcor=101; rlogoDP=30; rNsEucl=176; rNSW=172; rank_mean=120.800; match_rank= a 0 0 0 0 0 0 0 426110 1921 874657 989033 973127 0 985364 0 0 0 c 0 0 0 0 0 0 0 2635 79908 114913 7863 16694 778870 11132 0 0 0 g 0 0 0 0 0 0 0 542875 0 10430 0 10179 0 0 0 0 0 t 0 0 0 0 0 0 0 28380 918171 0 3104 0 221130 3504 0 0 0
FOXP3_2_shift7 (FOXP3_2)		0.731	0.511	4.639	0.852	0.848	108	97	83	167	154	121.800		; cluster_9 versus FOXP3_2; m=19/26; ncol2=7; w=0; offset=0; strand=D; shift=7; score= 121.8; -------rTAAACA--- ; cor=0.731; Ncor=0.511; logoDP=4.639; NsEucl=0.852; NSW=0.848; rcor=108; rNcor=97; rlogoDP=83; rNsEucl=167; rNSW=154; rank_mean=121.800; match_rank= a 0 0 0 0 0 0 0 350711 70671 871901 925438 767273 0 921397 0 0 0 c 0 0 0 0 0 0 0 0 183746 0 0 54545 748227 0 0 0 0 g 0 0 0 0 0 0 0 649289 0 0 39474 178182 113475 78603 0 0 0 t 0 0 0 0 0 0 0 0 745583 128099 35088 0 138298 0 0 0 0
FOXK1_4_shift7 (FOXK1_4)		0.739	0.518	3.925	0.856	0.854	91	91	125	161	144	122.400		; cluster_9 versus FOXK1_4; m=20/26; ncol2=7; w=0; offset=0; strand=D; shift=7; score= 122.4; -------rTAAACA--- ; cor=0.739; Ncor=0.518; logoDP=3.925; NsEucl=0.856; NSW=0.854; rcor=91; rNcor=91; rlogoDP=125; rNsEucl=161; rNSW=144; rank_mean=122.400; match_rank= a 0 0 0 0 0 0 0 363985 82468 787094 853200 817789 104992 937027 0 0 0 c 0 0 0 0 0 0 0 0 121406 161984 39971 106043 683308 0 0 0 0 g 0 0 0 0 0 0 0 617405 80072 25022 42113 24401 53354 21949 0 0 0 t 0 0 0 0 0 0 0 18610 716054 25900 64716 51767 158346 41024 0 0 0
YY1_disc2_shift9 (YY1_disc2)		0.717	0.478	9.518	0.844	0.806	143	130	2	179	180	126.800		; cluster_9 versus YY1_disc2; m=21/26; ncol2=10; w=0; offset=2; strand=D; shift=9; score= 126.8; ---------AAACA-GG ; cor=0.717; Ncor=0.478; logoDP=9.518; NsEucl=0.844; NSW=0.806; rcor=143; rNcor=130; rlogoDP=2; rNsEucl=179; rNSW=180; rank_mean=126.800; match_rank= a 0 0 0 0 0 0 0 0 0 1e+06 1e+06 1e+06 0 1e+06 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 1e+06 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1e+06 1e+06 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
FOXD2_2_shift7 (FOXD2_2)		0.720	0.504	4.789	0.849	0.841	136	105	75	172	161	129.800		; cluster_9 versus FOXD2_2; m=22/26; ncol2=7; w=0; offset=0; strand=D; shift=7; score= 129.8; -------rTAAAYA--- ; cor=0.720; Ncor=0.504; logoDP=4.789; NsEucl=0.849; NSW=0.841; rcor=136; rNcor=105; rlogoDP=75; rNsEucl=172; rNSW=161; rank_mean=129.800; match_rank= a 0 0 0 0 0 0 0 310416 103943 823115 943855 981589 0 823841 0 0 0 c 0 0 0 0 0 0 0 27193 152927 123952 29843 0 718585 0 0 0 0 g 0 0 0 0 0 0 0 646998 0 0 10116 0 14784 98455 0 0 0 t 0 0 0 0 0 0 0 15393 743130 52933 16186 18411 266631 77704 0 0 0
FOXC1_7_shift7 (FOXC1_7)		0.710	0.497	5.902	0.844	0.830	156	109	36	178	174	130.600		; cluster_9 versus FOXC1_7; m=23/26; ncol2=7; w=0; offset=0; strand=D; shift=7; score= 130.6; -------rTAAACA--- ; cor=0.710; Ncor=0.497; logoDP=5.902; NsEucl=0.844; NSW=0.830; rcor=156; rNcor=109; rlogoDP=36; rNsEucl=178; rNSW=174; rank_mean=130.600; match_rank= a 0 0 0 0 0 0 0 598010 38786 814144 908257 976332 7028 993976 0 0 0 c 0 0 0 0 0 0 0 14925 126476 160362 19266 5917 768072 0 0 0 0 g 0 0 0 0 0 0 0 387065 0 21382 37615 0 0 6024 0 0 0 t 0 0 0 0 0 0 0 0 834738 4112 34862 17751 224900 0 0 0 0
RFX5_known6_rc_shift6 (RFX5_known6_rc)		0.709	0.443	4.655	0.875	0.843	161	151	82	120	160	134.800		; cluster_9 versus RFX5_known6_rc; m=24/26; ncol2=16; w=-1; offset=-1; strand=R; shift=6; score= 134.8; ------sGTwrCCATRG ; cor=0.709; Ncor=0.443; logoDP=4.655; NsEucl=0.875; NSW=0.843; rcor=161; rNcor=151; rlogoDP=82; rNsEucl=120; rNSW=160; rank_mean=134.800; match_rank= a 0 0 0 0 0 0 149171 33290 2421 315390 352094 5659 56 877797 73907 281043 148222 c 0 0 0 0 0 0 411286 1205 18302 112910 8825 728686 832639 29699 71538 3643 1641 g 0 0 0 0 0 0 278538 961891 14041 8033 518415 29564 3777 37706 65423 715233 849864 t 0 0 0 0 0 0 161005 3614 965236 563667 120666 236091 163528 54798 789132 81 273
SMAD_1_shift9 (SMAD_1)		0.701	0.510	4.912	0.853	0.828	176	98	67	165	177	136.600		; cluster_9 versus SMAD_1; m=25/26; ncol2=9; w=0; offset=2; strand=D; shift=9; score= 136.6; ---------AGACwbcm ; cor=0.701; Ncor=0.510; logoDP=4.912; NsEucl=0.853; NSW=0.828; rcor=176; rNcor=98; rlogoDP=67; rNsEucl=165; rNSW=177; rank_mean=136.600; match_rank= a 0 0 0 0 0 0 0 0 0 833333 0 833333 0 416667 0 166667 333333 c 0 0 0 0 0 0 0 0 0 83333 0 83333 916667 166667 416667 500000 333333 g 0 0 0 0 0 0 0 0 0 83333 916667 0 0 83333 333333 166667 166667 t 0 0 0 0 0 0 0 0 0 0 83333 83333 83333 333333 250000 166667 166667
SMAD3_1_rc_shift5 (SMAD3_1_rc)		0.724	0.422	4.326	0.849	0.841	121	167	101	174	164	145.400		; cluster_9 versus SMAD3_1_rc; m=26/26; ncol2=9; w=-2; offset=-2; strand=R; shift=5; score= 145.4; -----AGaCAGACa--- ; cor=0.724; Ncor=0.422; logoDP=4.326; NsEucl=0.849; NSW=0.841; rcor=121; rNcor=167; rlogoDP=101; rNsEucl=174; rNSW=164; rank_mean=145.400; match_rank= a 0 0 0 0 0 777778 0 555556 0 888889 0 777778 0 666667 0 0 0 c 0 0 0 0 0 0 0 0 1e+06 0 0 222222 888889 0 0 0 0 g 0 0 0 0 0 111111 1e+06 222222 0 111111 1e+06 0 0 222222 0 0 0 t 0 0 0 0 0 111111 0 222222 0 0 0 0 111111 111111 0 0 0

One-to-n matrix alignment; reference matrix: cluster_3_shift2 ; 8 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_3_shift2 (cluster_3)														; cluster_3; m=0 (reference); ncol1=13; shift=2; ncol=15; --ysCCTCTsCCysg ; Alignment reference a 0 0 1111 253 141 95 1 0 93 16 12 212 246 190 111 c 0 0 2799 3910 5966 5269 145 6707 9 3599 6374 5668 2761 1227 263 g 0 0 224 2081 190 1273 49 1 70 3092 3 653 324 2482 2725 t 0 0 2575 465 412 72 6514 1 6537 2 320 176 3378 138 938
SPI1_disc1_shift0 (SPI1_disc1)		0.807	0.430	4.510	0.888	0.899	13	160	89	67	31	72.000		; cluster_3 versus SPI1_disc1; m=1/7; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score= 72; AC--CCYCT------ ; cor=0.807; Ncor=0.430; logoDP=4.510; NsEucl=0.888; NSW=0.899; rcor=13; rNcor=160; rlogoDP=89; rNsEucl=67; rNSW=31; rank_mean=72.000; match_rank= a 977143 0 0 0 22857 0 0 0 205714 0 0 0 0 0 0 c 0 862857 0 0 977143 1e+06 251429 868571 0 0 0 0 0 0 0 g 22857 137143 0 0 0 0 34286 131429 0 0 0 0 0 0 0 t 0 0 0 0 0 0 714285 0 794286 0 0 0 0 0 0
STAT_disc7_rc_shift5 (STAT_disc7_rc)		0.764	0.477	0.645	0.902	0.904	44	131	165	25	25	78.000		; cluster_3 versus STAT_disc7_rc; m=2/7; ncol2=13; w=0; offset=3; strand=R; shift=5; score= 78; -----cyCwbCCyyt ; cor=0.764; Ncor=0.477; logoDP=0.645; NsEucl=0.902; NSW=0.904; rcor=44; rNcor=131; rlogoDP=165; rNsEucl=25; rNSW=25; rank_mean=78.000; match_rank= a 0 0 0 0 0 0 218045 0 323308 0 0 0 157895 75188 218045 c 0 0 0 0 0 601504 308271 1e+06 240602 345865 819549 1e+06 406015 330827 218045 g 0 0 0 0 0 180451 127820 0 52632 315789 0 0 0 225564 225564 t 0 0 0 0 0 218045 345865 0 383459 338346 180451 0 436090 368421 338346
BDP1_disc3_rc_shift3 (BDP1_disc3_rc)		0.705	0.564	1.595	0.903	0.887	165	24	155	22	63	85.800		; cluster_3 versus BDP1_disc3_rc; m=3/7; ncol2=14; w=0; offset=1; strand=R; shift=3; score= 85.8; ---syCwswsCyhyv ; cor=0.705; Ncor=0.564; logoDP=1.595; NsEucl=0.903; NSW=0.887; rcor=165; rNcor=24; rlogoDP=155; rNsEucl=22; rNSW=63; rank_mean=85.800; match_rank= a 0 0 0 0 0 0 434211 0 460526 0 0 0 250000 171053 250000 c 0 0 0 605263 578947 1e+06 184211 605263 78947 434211 1e+06 565789 368421 328947 263158 g 0 0 0 394737 0 0 0 394737 144737 565789 0 0 0 210526 263158 t 0 0 0 0 421053 0 381579 0 315789 0 0 434211 381579 289474 223684
MAZ_1_rc_shift5 (MAZ_1_rc)		0.795	0.489	0.249	0.882	0.889	16	113	179	90	55	90.600		; cluster_3 versus MAZ_1_rc; m=4/7; ncol2=8; w=0; offset=3; strand=R; shift=5; score= 90.6; -----CCCTCCCy-- ; cor=0.795; Ncor=0.489; logoDP=0.249; NsEucl=0.882; NSW=0.889; rcor=16; rNcor=113; rlogoDP=179; rNsEucl=90; rNSW=55; rank_mean=90.600; match_rank= a 0 0 0 0 0 0 0 0 0 0 83333 0 83333 0 0 c 0 0 0 0 0 1e+06 750000 1e+06 0 916667 916667 1e+06 666667 0 0 g 0 0 0 0 0 0 83333 0 166667 83333 0 0 0 0 0 t 0 0 0 0 0 0 166667 0 833333 0 0 0 250000 0 0
STAT_known16_rc_shift7 (STAT_known16_rc)		0.755	0.403	2.374	0.877	0.879	54	179	147	111	96	117.400		; cluster_3 versus STAT_known16_rc; m=5/7; ncol2=10; w=0; offset=5; strand=R; shift=7; score= 117.4; -------yTTCCtGG ; cor=0.755; Ncor=0.403; logoDP=2.374; NsEucl=0.877; NSW=0.879; rcor=54; rNcor=179; rlogoDP=147; rNsEucl=111; rNSW=96; rank_mean=117.400; match_rank= a 0 0 0 0 0 0 0 22838 1631 0 21207 0 200653 106036 22838 c 0 0 0 0 0 0 0 641109 8157 11419 965742 986949 241436 1631 14682 g 0 0 0 0 0 0 0 24470 1631 34258 3263 0 34258 882545 900489 t 0 0 0 0 0 0 0 311582 988581 954323 9788 13051 523654 9788 61990
SPI1_disc3_rc_shift5 (SPI1_disc3_rc)		0.703	0.414	0.503	0.892	0.884	170	173	168	46	75	126.400		; cluster_3 versus SPI1_disc3_rc; m=6/7; ncol2=14; w=0; offset=3; strand=R; shift=5; score= 126.4; -----SwstkCCycb ; cor=0.703; Ncor=0.414; logoDP=0.503; NsEucl=0.892; NSW=0.884; rcor=170; rNcor=173; rlogoDP=168; rNsEucl=46; rNSW=75; rank_mean=126.400; match_rank= a 0 0 0 0 0 0 350000 0 232500 0 0 0 175000 230000 0 c 0 0 0 0 0 685000 200000 570000 192500 245000 755000 1e+06 460000 312500 397500 g 0 0 0 0 0 315000 152500 430000 145000 400000 245000 0 0 222500 275000 t 0 0 0 0 0 0 297500 0 430000 355000 0 0 365000 235000 327500
ETS_2_shift6 (ETS_2)		0.711	0.438	3.764	0.874	0.873	153	153	131	122	113	134.400		; cluster_3 versus ETS_2; m=7/7; ncol2=8; w=0; offset=4; strand=D; shift=6; score= 134.4; ------acT-CCts- ; cor=0.711; Ncor=0.438; logoDP=3.764; NsEucl=0.874; NSW=0.873; rcor=153; rNcor=153; rlogoDP=131; rNsEucl=122; rNSW=113; rank_mean=134.400; match_rank= a 0 0 0 0 0 0 506173 37037 148148 0 0 12346 49383 61728 0 c 0 0 0 0 0 0 148148 679012 24691 0 1e+06 950617 98765 407407 0 g 0 0 0 0 0 0 246914 61728 0 0 0 0 172840 382716 0 t 0 0 0 0 0 0 98765 222222 827160 0 0 37037 679012 148148 0

One-to-n matrix alignment; reference matrix: cluster_8_shift0 ; 11 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_8_shift0 (cluster_8)														; cluster_8; m=0 (reference); ncol1=10; shift=0; ncol=10; mkCACATCyy ; Alignment reference a 178 1 0 465 0 465 0 0 2 51 c 283 113 465 0 465 0 0 465 180 282 g 2 125 0 0 0 0 0 0 1 6 t 2 226 0 0 0 0 465 0 282 126
TBX15_2_rc_shift1 (TBX15_2_rc)		0.745	0.596	1.426	0.858	0.839	77	9	157	158	167	113.600		; cluster_8 versus TBX15_2_rc; m=1/10; ncol2=8; w=0; offset=1; strand=R; shift=1; score= 113.6; -TCACACCT- ; cor=0.745; Ncor=0.596; logoDP=1.426; NsEucl=0.858; NSW=0.839; rcor=77; rNcor=9; rlogoDP=157; rNsEucl=158; rNSW=167; rank_mean=113.600; match_rank= a 0 8747 78495 921146 0 956205 0 9226 9866 0 c 0 27882 879786 28419 999239 22307 997530 940702 58492 0 g 0 6469 38033 38155 761 15934 665 9047 6519 0 t 0 956902 3686 12280 0 5554 1805 41025 925123 0
BCL_disc7_shift3 (BCL_disc7)		0.740	0.431	7.598	0.849	0.841	90	158	10	173	163	118.800		; cluster_8 versus BCL_disc7; m=2/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score= 118.8; ---ACAGCKC ; cor=0.740; Ncor=0.431; logoDP=7.598; NsEucl=0.849; NSW=0.841; rcor=90; rNcor=158; rlogoDP=10; rNsEucl=173; rNSW=163; rank_mean=118.800; match_rank= a 0 0 0 1e+06 0 1e+06 0 50000 0 50000 c 0 0 0 0 1e+06 0 0 925000 0 825000 g 0 0 0 0 0 0 975000 25000 300000 0 t 0 0 0 0 0 0 25000 0 700000 125000
TBX1_3_rc_shift1 (TBX1_3_rc)		0.732	0.585	1.558	0.856	0.834	106	12	156	160	171	121.000		; cluster_8 versus TBX1_3_rc; m=3/10; ncol2=8; w=0; offset=1; strand=R; shift=1; score= 121; -TCACACCT- ; cor=0.732; Ncor=0.585; logoDP=1.558; NsEucl=0.856; NSW=0.834; rcor=106; rNcor=12; rlogoDP=156; rNsEucl=160; rNSW=171; rank_mean=121.000; match_rank= a 0 0 75121 932474 0 968897 0 44987 41425 0 c 0 1502 862628 8519 999581 11450 1e+06 802300 73963 0 g 0 2754 52057 47909 419 17379 0 47811 8300 0 t 0 995744 10194 11098 0 2274 0 104902 876312 0
ZBTB18_2_rc_shift1 (ZBTB18_2_rc)		0.749	0.482	1.086	0.873	0.855	66	122	161	127	142	123.600		; cluster_8 versus ZBTB18_2_rc; m=4/10; ncol2=13; w=0; offset=1; strand=R; shift=1; score= 123.6; -vmACATCTG ; cor=0.749; Ncor=0.482; logoDP=1.086; NsEucl=0.873; NSW=0.855; rcor=66; rNcor=122; rlogoDP=161; rNsEucl=127; rNSW=142; rank_mean=123.600; match_rank= a 0 304927 579365 985583 1328 998672 3764 0 0 0 c 0 312916 414021 0 998672 1328 7528 984293 0 3942 g 0 258322 1323 14417 0 0 45169 14398 0 988174 t 0 123835 5291 0 0 0 943539 1309 1e+06 7884
ETS_disc5_rc_shift3 (ETS_disc5_rc)		0.754	0.480	1.311	0.864	0.870	59	126	159	152	123	123.800		; cluster_8 versus ETS_disc5_rc; m=5/10; ncol2=8; w=0; offset=3; strand=R; shift=3; score= 123.8; ---ACAaCTC ; cor=0.754; Ncor=0.480; logoDP=1.311; NsEucl=0.864; NSW=0.870; rcor=59; rNcor=126; rlogoDP=159; rNsEucl=152; rNSW=123; rank_mean=123.800; match_rank= a 0 0 0 754045 51780 792880 658576 46926 42071 90615 c 0 0 0 111650 823625 69579 122977 768608 84142 818770 g 0 0 0 84142 108414 90615 144013 80906 53398 45307 t 0 0 0 50162 16181 46926 74434 103560 820388 45307
TCF7L2_disc2_rc_shift3 (TCF7L2_disc2_rc)		0.778	0.419	2.124	0.864	0.871	32	170	149	151	120	124.400		; cluster_8 versus TCF7L2_disc2_rc; m=6/10; ncol2=10; w=0; offset=3; strand=R; shift=3; score= 124.4; ---AsWTC-- ; cor=0.778; Ncor=0.419; logoDP=2.124; NsEucl=0.864; NSW=0.871; rcor=32; rNcor=170; rlogoDP=149; rNsEucl=151; rNSW=120; rank_mean=124.400; match_rank= a 0 0 0 816425 0 685990 0 0 0 0 c 0 0 0 0 507246 0 0 787440 0 0 g 0 0 0 183575 492754 0 0 212560 0 0 t 0 0 0 0 0 314010 1e+06 0 0 0
MGA_1_rc_shift1 (MGA_1_rc)		0.720	0.576	1.375	0.859	0.840	138	15	158	157	166	126.800		; cluster_8 versus MGA_1_rc; m=7/10; ncol2=8; w=0; offset=1; strand=R; shift=1; score= 126.8; -TCACACCT- ; cor=0.720; Ncor=0.576; logoDP=1.375; NsEucl=0.859; NSW=0.840; rcor=138; rNcor=15; rlogoDP=158; rNsEucl=157; rNSW=166; rank_mean=126.800; match_rank= a 0 8618 164103 871089 360 893293 3342 47671 93121 0 c 0 28937 773911 10885 999148 2813 979787 753466 198621 0 g 0 3460 44497 88255 33 103542 16357 92351 25765 0 t 0 958985 17489 29771 459 352 514 106512 682493 0
SIN3A_disc4_shift3 (SIN3A_disc4)		0.730	0.426	8.156	0.844	0.830	110	163	7	180	175	127.000		; cluster_8 versus SIN3A_disc4; m=8/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score= 127; ---ACAGCTC ; cor=0.730; Ncor=0.426; logoDP=8.156; NsEucl=0.844; NSW=0.830; rcor=110; rNcor=163; rlogoDP=7; rNsEucl=180; rNSW=175; rank_mean=127.000; match_rank= a 0 0 0 1e+06 0 1e+06 0 0 222222 0 c 0 0 0 0 1e+06 0 0 1e+06 0 814815 g 0 0 0 0 0 0 1e+06 0 0 185185 t 0 0 0 0 0 0 0 0 777778 0
ZBTB18_3_rc_shift1 (ZBTB18_3_rc)		0.742	0.477	0.863	0.872	0.853	83	132	163	130	148	131.200		; cluster_8 versus ZBTB18_3_rc; m=9/10; ncol2=13; w=0; offset=1; strand=R; shift=1; score= 131.2; -vmACATCTG ; cor=0.742; Ncor=0.477; logoDP=0.863; NsEucl=0.872; NSW=0.853; rcor=83; rNcor=132; rlogoDP=163; rNsEucl=130; rNSW=148; rank_mean=131.200; match_rank= a 0 294587 579071 971709 73 991082 19421 431 14805 584 c 0 283541 393398 2559 999635 6815 18178 981758 2372 219 g 0 295684 12592 22320 73 1088 68528 17596 359 997664 t 0 126189 14939 3412 219 1015 893873 215 982464 1533
RUNX2_1_rc_shift0 (RUNX2_1_rc)		0.753	0.452	0.350	0.846	0.858	63	145	174	175	139	139.200		; cluster_8 versus RUNX2_1_rc; m=10/10; ncol2=6; w=0; offset=0; strand=R; shift=0; score= 139.2; ACCACA---- ; cor=0.753; Ncor=0.452; logoDP=0.350; NsEucl=0.846; NSW=0.858; rcor=63; rNcor=145; rlogoDP=174; rNsEucl=175; rNSW=139; rank_mean=139.200; match_rank= a 929825 0 0 684211 0 877193 0 0 0 0 c 0 982456 1e+06 0 929825 17544 0 0 0 0 g 52632 0 0 245614 35088 17544 0 0 0 0 t 17544 17544 0 70175 35088 87719 0 0 0 0

One-to-n matrix alignment; reference matrix: cluster_11_shift0 ; 3 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_11_shift0 (cluster_11)														; cluster_11; m=0 (reference); ncol1=13; shift=0; ncol=13; srkCyGAGATsws ; Alignment reference a 3 109 5 3 0 0 221 0 222 0 1 96 2 c 121 3 21 218 75 1 2 0 1 3 108 6 97 g 94 106 97 2 1 224 1 225 2 0 104 17 122 t 7 7 102 2 149 0 1 0 0 222 12 106 4
GATA_disc4_shift1 (GATA_disc4)		0.730	0.449	6.272	0.865	0.855	111	149	29	146	143	115.600		; cluster_11 versus GATA_disc4; m=1/2; ncol2=8; w=0; offset=1; strand=D; shift=1; score= 115.6; -AtC-GA-m---- ; cor=0.730; Ncor=0.449; logoDP=6.272; NsEucl=0.865; NSW=0.855; rcor=111; rNcor=149; rlogoDP=29; rNsEucl=146; rNSW=143; rank_mean=115.600; match_rank= a 0 1e+06 0 0 0 0 1e+06 0 655172 0 0 0 0 c 0 0 206897 1e+06 0 0 0 0 344828 0 0 0 0 g 0 0 241379 0 0 1e+06 0 0 0 0 0 0 0 t 0 0 551724 0 0 0 0 0 0 0 0 0 0
GATA_known3_shift5 (GATA_known3)		0.713	0.407	5.050	0.872	0.869	150	176	60	131	126	128.600		; cluster_11 versus GATA_known3; m=2/2; ncol2=9; w=0; offset=5; strand=D; shift=5; score= 128.6; -----raGATwrk ; cor=0.713; Ncor=0.407; logoDP=5.050; NsEucl=0.872; NSW=0.869; rcor=150; rNcor=176; rlogoDP=60; rNsEucl=131; rNSW=126; rank_mean=128.600; match_rank= a 0 0 0 0 0 253968 412698 0 984127 15873 555556 269841 158730 c 0 0 0 0 0 222222 206349 0 0 0 31746 79365 174603 g 0 0 0 0 0 380952 142857 1e+06 0 47619 158730 523810 412698 t 0 0 0 0 0 142857 238095 0 15873 936508 253968 126984 253968